Wall clock time and date at job start Tue Mar 31 2020 12:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46810 * 2 1 4 4 C 1.52993 * 109.47340 * 119.99538 * 2 1 3 5 5 H 1.09000 * 109.43322 * 291.98880 * 4 2 1 6 6 C 1.54864 * 109.44734 * 51.92541 * 4 2 1 7 7 C 1.47097 * 110.32283 * 191.30458 * 6 4 2 8 8 C 1.52570 * 114.32713 * 297.19744 * 7 6 4 9 9 C 1.50883 * 109.35955 * 85.00671 * 8 7 6 10 10 C 1.53604 * 109.95618 * 268.02661 * 9 8 7 11 11 N 1.44584 * 109.45172 * 172.05066 * 4 2 1 12 12 S 1.65606 * 118.64139 * 329.21843 * 11 4 2 13 13 O 1.42099 * 104.27368 * 177.38559 * 12 11 4 14 14 O 1.42103 * 104.27736 * 49.52476 * 12 11 4 15 15 C 1.81397 * 104.44643 * 293.45498 * 12 11 4 16 16 C 1.53002 * 109.46941 * 187.69642 * 15 12 11 17 17 C 1.53004 * 109.47252 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.47295 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99888 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00005 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00217 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99913 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46864 * 90.00070 * 22 20 18 24 24 H 1.48498 * 109.46766 * 209.99688 * 22 20 18 25 25 H 1.48493 * 109.47370 * 330.00121 * 22 20 18 26 26 H 1.09000 * 109.46882 * 299.99696 * 1 2 3 27 27 H 1.08997 * 109.47299 * 60.00391 * 1 2 3 28 28 H 1.09007 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46882 * 240.00304 * 2 1 3 30 30 H 1.09001 * 109.47404 * 168.15828 * 3 2 1 31 31 H 1.09004 * 109.47079 * 288.15766 * 3 2 1 32 32 H 1.09002 * 109.47004 * 48.15285 * 3 2 1 33 33 H 1.08997 * 109.32712 * 311.56192 * 6 4 2 34 34 H 1.08999 * 109.33482 * 71.21692 * 6 4 2 35 35 H 1.09001 * 108.51411 * 58.44899 * 7 6 4 36 36 H 1.09001 * 108.51421 * 175.94410 * 7 6 4 37 37 H 1.08991 * 109.49559 * 204.97912 * 8 7 6 38 38 H 1.09001 * 109.48727 * 325.02172 * 8 7 6 39 39 H 1.09002 * 109.36652 * 28.31095 * 9 8 7 40 40 H 1.09003 * 109.36677 * 147.92545 * 9 8 7 41 41 H 1.08990 * 108.93711 * 280.02808 * 10 9 8 42 42 H 1.09002 * 108.75221 * 161.50993 * 10 9 8 43 43 H 1.09003 * 109.47206 * 307.69135 * 15 12 11 44 44 H 1.08997 * 109.47622 * 67.69591 * 15 12 11 45 45 H 1.09003 * 109.46757 * 299.99768 * 16 15 12 46 46 H 1.08996 * 109.47536 * 60.00118 * 16 15 12 47 47 H 1.09000 * 109.47326 * 300.00117 * 17 16 15 48 48 H 1.09005 * 109.46659 * 59.99628 * 17 16 15 49 49 H 0.96988 * 120.00285 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.7981 -0.1307 2.1330 6 6 1.3629 -2.1098 1.3555 7 6 1.6259 -2.7068 2.6739 8 6 3.0996 -2.9828 2.9563 9 6 3.7479 -1.7323 3.4971 10 6 4.3503 -0.9138 2.3453 11 7 3.4735 -0.8863 1.1583 12 16 4.1593 -1.0584 -0.3393 13 8 5.5543 -1.1335 -0.0793 14 8 3.6123 0.0099 -1.1001 15 6 3.5373 -2.6524 -0.9414 16 6 4.2517 -3.0196 -2.2436 17 6 3.7275 -4.3644 -2.7513 18 6 4.4307 -4.7258 -4.0343 19 1 5.1771 -4.0628 -4.4462 20 6 4.1219 -5.9033 -4.6816 21 7 4.7351 -6.2184 -5.8015 22 14 2.8323 -7.0510 -3.9680 23 1 1.4968 -6.6928 -4.5096 24 1 3.1572 -8.4519 -4.3385 25 1 2.8178 -6.9208 -2.4889 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1093 1.4500 0.2109 31 1 1.8591 1.8919 -0.9765 32 1 1.5146 2.0136 0.7656 33 1 0.2874 -1.9982 1.2181 34 1 1.7596 -2.7650 0.5801 35 1 1.2470 -2.0318 3.4413 36 1 1.0783 -3.6467 2.7437 37 1 3.1856 -3.7837 3.6904 38 1 3.5971 -3.2806 2.0333 39 1 3.0002 -1.1334 4.0172 40 1 4.5376 -2.0079 4.1962 41 1 5.3100 -1.3487 2.0665 42 1 4.5129 0.1078 2.6889 43 1 3.7268 -3.4224 -0.1935 44 1 2.4652 -2.5788 -1.1235 45 1 4.0621 -2.2496 -2.9916 46 1 5.3238 -3.0933 -2.0617 47 1 3.9173 -5.1342 -2.0032 48 1 2.6552 -4.2911 -2.9332 49 1 4.5181 -7.0469 -6.2567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309351978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:51 Heat of formation + Delta-G solvation = -97.595245 kcal Electronic energy + Delta-G solvation = -27344.688641 eV Core-core repulsion = 23818.980825 eV Total energy + Delta-G solvation = -3525.707816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.55714 -38.58621 -37.12759 -36.58090 -35.99723 -34.55146 -34.19213 -32.24476 -30.19937 -28.21680 -26.68061 -26.31571 -25.46068 -22.66141 -21.96707 -21.38456 -21.21489 -19.84092 -19.03662 -18.12359 -17.58129 -17.28313 -16.51308 -16.35872 -16.08935 -15.76010 -15.70125 -15.09142 -14.91706 -14.84292 -14.74059 -14.14347 -13.81543 -13.74343 -13.51802 -13.33901 -13.28503 -13.25709 -13.22514 -12.75450 -12.73695 -12.65905 -12.63553 -12.25429 -12.20778 -11.87451 -11.75771 -11.68290 -11.58594 -11.48721 -11.39500 -11.31393 -11.16914 -10.99231 -10.85008 -10.79233 -9.79957 -8.31559 -6.37691 -0.74920 1.34852 1.37543 1.49160 1.67658 2.34663 2.74873 3.03458 3.20226 3.38472 3.68178 3.80290 3.85757 3.93547 4.09947 4.14058 4.20039 4.29743 4.32816 4.38453 4.51096 4.54024 4.66230 4.70100 4.79601 4.80994 4.89001 4.92027 4.93539 4.98047 5.09315 5.12103 5.17224 5.25040 5.29227 5.33112 5.36090 5.37621 5.41073 5.42235 5.49700 5.54984 5.58437 5.60906 5.66188 5.91662 6.23284 6.70153 7.27023 8.85566 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.004312 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.295931 B = 6491.911942 C = 6699.154529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C -0.117 4.117 4 C 0.158 3.842 5 H 0.109 0.891 6 C -0.158 4.158 7 C -0.113 4.113 8 C -0.125 4.125 9 C -0.121 4.121 10 C 0.109 3.891 11 N -0.975 5.975 12 S 2.599 3.401 13 O -0.997 6.997 14 O -0.964 6.964 15 C -0.616 4.616 16 C -0.098 4.098 17 C -0.002 4.002 18 C -0.545 4.545 19 H 0.029 0.971 20 C 0.003 3.997 21 N -0.952 5.952 22 Si 0.953 3.047 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.240 1.240 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.030 0.970 48 H 0.031 0.969 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 10.892 24.349 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.175 4.175 4 C 0.052 3.948 5 H 0.127 0.873 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.163 4.163 9 C -0.160 4.160 10 C -0.015 4.015 11 N -0.813 5.813 12 S 2.697 3.303 13 O -0.988 6.988 14 O -0.954 6.954 15 C -0.746 4.746 16 C -0.137 4.137 17 C -0.041 4.041 18 C -0.582 4.582 19 H 0.047 0.953 20 C -0.194 4.194 21 N -0.592 5.592 22 Si 0.775 3.225 23 H -0.188 1.188 24 H -0.210 1.210 25 H -0.163 1.163 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.165 0.835 44 H 0.169 0.831 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.606 11.437 23.864 28.509 hybrid contribution -0.150 -1.154 -0.695 1.355 sum -10.757 10.284 23.169 27.537 Atomic orbital electron populations 1.21938 0.92870 1.02887 1.02548 1.22087 0.97925 0.98005 0.97536 1.21639 1.00320 0.95008 1.00524 1.21160 0.77398 0.96322 0.99946 0.87332 1.21782 1.02836 0.95929 0.99122 1.20387 0.96048 1.01282 0.97320 1.21166 0.96227 0.97959 1.00939 1.21681 1.01501 0.96333 0.96449 1.21836 0.92646 1.01755 0.85257 1.56951 1.15178 1.87594 1.21622 1.05166 0.73256 0.77395 0.74509 1.93482 1.32750 1.88182 1.84344 1.93694 1.78549 1.50681 1.72485 1.30779 1.12946 1.22888 1.08028 1.21135 0.99252 0.99986 0.93370 1.19477 0.96522 0.93445 0.94617 1.21537 1.22663 1.05832 1.08218 0.95285 1.26089 0.98722 0.99695 0.94870 1.70076 1.44675 1.25509 1.18944 0.85618 0.78920 0.77264 0.80651 1.18792 1.20994 1.16282 0.91009 0.92866 0.90943 0.90761 0.93694 0.94165 0.92568 0.88090 0.92036 0.90788 0.91983 0.90974 0.93409 0.89924 0.89596 0.90138 0.90683 0.83497 0.83061 0.92101 0.92248 0.95160 0.95109 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.62 71.98 0.62 -1.54 16 2 C -0.14 -2.72 1.99 -10.79 -0.02 -2.74 16 3 C -0.12 -2.66 7.71 71.98 0.55 -2.10 16 4 C 0.16 2.56 1.59 45.98 0.07 2.64 16 5 H 0.11 1.38 8.06 -2.39 -0.02 1.36 16 6 C -0.16 -2.19 4.76 29.40 0.14 -2.05 16 7 C -0.11 -1.34 5.15 28.62 0.15 -1.19 16 8 C -0.13 -1.70 5.50 29.76 0.16 -1.54 16 9 C -0.12 -1.44 5.71 30.11 0.17 -1.27 16 10 C 0.11 1.90 6.06 86.37 0.52 2.42 16 11 N -0.98 -19.81 1.96 -490.50 -0.96 -20.77 16 12 S 2.60 75.16 4.75 -56.49 -0.27 74.89 16 13 O -1.00 -35.47 16.09 -127.65 -2.05 -37.53 16 14 O -0.96 -31.29 11.27 -127.65 -1.44 -32.73 16 15 C -0.62 -17.57 4.40 71.98 0.32 -17.26 16 16 C -0.10 -3.90 5.16 30.60 0.16 -3.74 16 17 C 0.00 -0.10 4.04 29.85 0.12 0.02 16 18 C -0.54 -31.96 9.66 25.60 0.25 -31.71 16 19 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 20 C 0.00 0.18 5.47 84.65 0.46 0.64 16 21 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 22 Si 0.95 43.42 27.47 68.60 1.88 45.30 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.91 6.06 -2.38 -0.01 0.90 16 29 H 0.07 1.81 4.43 -2.59 -0.01 1.80 16 30 H 0.04 1.15 6.08 -2.39 -0.01 1.14 16 31 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.10 1.09 5.68 -2.39 -0.01 1.08 16 34 H 0.06 0.99 4.92 -2.39 -0.01 0.98 16 35 H 0.07 0.67 7.36 -2.39 -0.02 0.66 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.81 6.86 -2.39 -0.02 0.79 16 39 H 0.08 0.75 7.32 -2.39 -0.02 0.73 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.68 6.55 -2.39 -0.02 1.67 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.15 3.58 7.41 -2.39 -0.02 3.57 16 44 H 0.15 3.62 6.20 -2.39 -0.01 3.60 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 48 H 0.03 1.32 7.57 -2.38 -0.02 1.31 16 49 H 0.27 15.73 8.31 -92.72 -0.77 14.96 16 Total: -1.00 -74.60 361.44 2.00 -72.61 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.86 Total: 17.75 kcal Atomic # 6 Polarization: -63.10 SS G_CDS: 3.68 Total: -59.42 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -0.66 Total: -80.89 kcal Atomic # 8 Polarization: -66.76 SS G_CDS: -3.49 Total: -70.25 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.30 kcal Atomic # 16 Polarization: 75.16 SS G_CDS: -0.27 Total: 74.89 kcal Total: -74.60 2.00 -72.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309351978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.987 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds