Wall clock time and date at job start Tue Mar 31 2020 11:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46714 * 2 1 4 4 C 1.50702 * 109.46967 * 180.02562 * 3 2 1 5 5 C 1.33017 * 120.00051 * 95.00078 * 4 3 2 6 6 C 1.47063 * 120.00173 * 173.66882 * 5 4 3 7 7 O 1.21629 * 119.99960 * 3.54818 * 6 5 4 8 8 N 1.34780 * 120.00034 * 183.54988 * 6 5 4 9 9 C 1.39894 * 119.99892 * 174.86639 * 8 6 5 10 10 C 1.38946 * 120.00206 * 146.56838 * 9 8 6 11 11 C 1.37998 * 119.99844 * 180.02562 * 10 9 8 12 12 C 1.38909 * 120.00092 * 0.02562 * 11 10 9 13 13 O 1.35773 * 119.99833 * 179.97438 * 12 11 10 14 14 C 1.34819 * 116.99952 * 4.72790 * 13 12 11 15 15 H 1.08001 * 119.99239 * 354.94533 * 14 13 12 16 16 C 1.38630 * 120.00274 * 174.94758 * 14 13 12 17 17 N 1.31570 * 120.00149 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99813 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46975 * 90.00549 * 18 16 14 20 20 H 1.48498 * 109.47181 * 210.00128 * 18 16 14 21 21 H 1.48492 * 109.47543 * 330.00613 * 18 16 14 22 22 C 1.38915 * 120.01121 * 0.25398 * 12 11 10 23 23 C 1.38005 * 119.99824 * 359.44781 * 22 12 11 24 24 C 1.50707 * 120.00133 * 275.00329 * 4 3 2 25 25 C 1.52998 * 109.47053 * 263.16392 * 24 4 3 26 26 C 1.53001 * 109.46961 * 179.97438 * 25 24 4 27 27 H 1.09005 * 109.46752 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46803 * 299.99819 * 1 2 3 29 29 H 1.08994 * 109.47484 * 59.99743 * 1 2 3 30 30 H 1.08997 * 109.47037 * 240.00581 * 2 1 3 31 31 H 1.08994 * 109.47484 * 120.00257 * 2 1 3 32 32 H 1.09003 * 109.47338 * 60.00508 * 3 2 1 33 33 H 1.08996 * 109.47861 * 300.00437 * 3 2 1 34 34 H 1.08004 * 119.99712 * 353.66934 * 5 4 3 35 35 H 0.96996 * 119.99963 * 354.86279 * 8 6 5 36 36 H 1.08004 * 120.00157 * 0.02562 * 10 9 8 37 37 H 1.07991 * 119.99871 * 179.97438 * 11 10 9 38 38 H 0.96997 * 120.00536 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.00228 * 179.72482 * 22 12 11 40 40 H 1.08003 * 119.99855 * 180.25026 * 23 22 12 41 41 H 1.09001 * 109.46856 * 23.16711 * 24 4 3 42 42 H 1.09003 * 109.46942 * 143.16332 * 24 4 3 43 43 H 1.08989 * 109.47229 * 300.00161 * 25 24 4 44 44 H 1.09000 * 109.46808 * 60.00218 * 25 24 4 45 45 H 1.09001 * 109.46959 * 300.00325 * 26 25 24 46 46 H 1.08991 * 109.47251 * 60.00226 * 26 25 24 47 47 H 1.09001 * 109.46711 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2116 1.5432 -1.1485 6 6 5.6755 1.6835 -1.1407 7 8 6.2847 1.6428 -0.0888 8 7 6.3419 1.8573 -2.2992 9 6 7.7199 2.0980 -2.2841 10 6 8.5209 1.6151 -3.3117 11 6 9.8803 1.8521 -3.2964 12 6 10.4479 2.5731 -2.2535 13 8 11.7855 2.8058 -2.2383 14 6 12.4904 2.3958 -3.3119 15 1 12.0030 1.8349 -4.0956 16 6 13.8406 2.6942 -3.4098 17 7 14.5286 2.2936 -4.4574 18 14 14.6833 3.6650 -2.0545 19 1 15.2185 2.7282 -1.0341 20 1 15.7985 4.4568 -2.6328 21 1 13.7029 4.5815 -1.4191 22 6 9.6482 3.0510 -1.2231 23 6 8.2878 2.8194 -1.2413 24 6 4.3011 1.3286 1.2992 25 6 4.7049 2.7243 1.7786 26 6 5.4699 2.6086 3.0985 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.6760 1.5218 -2.0862 35 1 5.8662 1.8154 -3.1435 36 1 8.0796 1.0542 -4.1223 37 1 10.5029 1.4764 -4.0948 38 1 15.4733 2.5027 -4.5261 39 1 10.0903 3.6077 -0.4101 40 1 7.6655 3.1944 -0.4423 41 1 3.6648 0.8570 2.0482 42 1 5.1950 0.7233 1.1487 43 1 5.3410 3.1957 1.0296 44 1 3.8109 3.3295 1.9290 45 1 4.8333 2.1372 3.8473 46 1 6.3638 2.0032 2.9485 47 1 5.7572 3.6030 3.4403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319972928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:32 Heat of formation + Delta-G solvation = -38.373222 kcal Electronic energy + Delta-G solvation = -25763.248105 eV Core-core repulsion = 22104.664397 eV Total energy + Delta-G solvation = -3658.583708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35478 -38.97864 -37.51607 -36.31236 -34.49017 -33.79284 -32.35670 -32.12602 -30.29244 -28.71165 -27.11533 -26.77397 -25.16886 -22.74233 -22.33592 -21.85019 -21.49034 -20.31518 -18.85928 -17.90040 -17.38150 -16.99695 -16.53716 -15.58801 -15.31048 -14.89037 -14.69927 -14.26756 -14.21833 -13.92423 -13.83604 -13.71200 -13.60212 -13.19972 -13.05941 -12.78238 -12.45161 -12.31131 -12.26190 -12.03122 -11.81403 -11.75523 -11.64399 -11.61519 -11.27373 -11.19770 -10.93848 -10.90486 -10.77641 -10.50156 -10.15940 -9.63047 -9.43297 -9.24351 -9.17209 -8.74355 -8.27376 -7.00257 -6.40487 -4.06169 1.20208 2.09895 2.19678 3.23783 3.27053 3.37673 3.37717 3.42635 4.25341 4.39678 4.48044 4.52303 4.67003 4.74482 4.89985 4.97814 5.03484 5.12016 5.15519 5.18853 5.23794 5.36408 5.40758 5.45706 5.50511 5.56691 5.65111 5.71522 5.73241 5.83324 5.89907 5.93073 6.00063 6.06539 6.12779 6.20377 6.25220 6.31811 6.43717 6.52289 6.70213 6.77351 6.97218 7.12164 7.24851 7.60265 7.72514 7.81002 8.03903 8.42175 8.94935 9.57832 10.67097 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.002414 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.469481 B =11595.013334 C =12507.230364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.025 4.025 5 C -0.227 4.227 6 C 0.536 3.464 7 O -0.520 6.520 8 N -0.660 5.660 9 C 0.050 3.950 10 C -0.094 4.094 11 C -0.206 4.206 12 C 0.151 3.849 13 O -0.217 6.217 14 C -0.388 4.388 15 H 0.106 0.894 16 C 0.062 3.938 17 N -0.880 5.880 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.177 4.177 23 C -0.070 4.070 24 C -0.098 4.098 25 C -0.104 4.104 26 C -0.147 4.147 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.402 0.598 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.279 0.721 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.057 0.943 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.060 0.940 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.203 -1.652 7.815 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.130 4.130 4 C -0.026 4.026 5 C -0.248 4.248 6 C 0.327 3.673 7 O -0.398 6.398 8 N -0.304 5.304 9 C -0.043 4.043 10 C -0.115 4.115 11 C -0.225 4.225 12 C 0.098 3.902 13 O -0.122 6.122 14 C -0.464 4.464 15 H 0.124 0.876 16 C -0.141 4.141 17 N -0.518 5.518 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.197 4.197 23 C -0.090 4.090 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.204 4.204 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.236 0.764 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.421 -1.565 8.615 26.887 hybrid contribution 0.190 0.204 -0.335 0.436 sum -25.232 -1.361 8.280 26.590 Atomic orbital electron populations 1.21789 0.95516 1.01821 1.01890 1.21485 0.95833 0.95697 1.02694 1.20861 0.90978 0.97825 1.03287 1.22554 0.95211 0.89553 0.95329 1.22342 0.93147 1.10480 0.98812 1.18582 0.87953 0.77098 0.83707 1.90748 1.69709 1.49214 1.30161 1.43197 1.07265 1.70936 1.08954 1.17292 0.82250 1.05086 0.99649 1.20541 0.93165 0.99621 0.98144 1.21088 0.94513 1.05333 1.01600 1.19145 0.83959 0.93549 0.93498 1.83582 1.14523 1.72110 1.42016 1.20756 0.92306 1.35155 0.98173 0.87646 1.24463 0.95349 0.96925 0.97321 1.69650 1.09296 1.45008 1.27882 0.86176 0.79027 0.80442 0.81254 1.19883 1.20857 1.18318 1.20122 0.92471 1.07023 1.00042 1.20602 0.94002 0.96734 0.97636 1.21067 1.00547 0.99267 0.92594 1.21309 0.99330 0.95716 0.97832 1.21702 1.00599 1.01423 0.96683 0.92579 0.92658 0.92648 0.91658 0.91603 0.90381 0.90763 0.85867 0.76401 0.86951 0.84545 0.91082 0.86214 0.85565 0.92487 0.87589 0.90901 0.93464 0.93506 0.92124 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.74 5.92 -26.73 -0.16 -0.89 16 3 C -0.09 -0.61 5.35 -27.88 -0.15 -0.76 16 4 C -0.02 -0.23 4.62 -101.16 -0.47 -0.69 16 5 C -0.23 -2.25 9.60 -37.82 -0.36 -2.61 16 6 C 0.54 7.19 7.20 -12.68 -0.09 7.10 16 7 O -0.52 -8.34 8.91 5.25 0.05 -8.29 16 8 N -0.66 -8.80 5.33 -10.90 -0.06 -8.86 16 9 C 0.05 0.86 6.28 -83.66 -0.53 0.33 16 10 C -0.09 -1.69 9.96 -39.41 -0.39 -2.08 16 11 C -0.21 -4.40 9.16 -39.42 -0.36 -4.77 16 12 C 0.15 3.52 6.65 -39.08 -0.26 3.26 16 13 O -0.22 -5.78 8.58 0.01 0.00 -5.78 16 14 C -0.39 -10.95 9.94 30.88 0.31 -10.64 16 15 H 0.11 3.01 5.42 -52.49 -0.28 2.73 16 16 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 17 N -0.88 -25.44 13.96 55.48 0.77 -24.66 16 18 Si 0.91 21.85 28.62 -169.99 -4.86 16.98 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.18 -3.66 9.99 -39.42 -0.39 -4.06 16 23 C -0.07 -1.30 8.65 -39.41 -0.34 -1.64 16 24 C -0.10 -1.03 4.64 -27.88 -0.13 -1.16 16 25 C -0.10 -1.14 5.35 -26.73 -0.14 -1.28 16 26 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 34 H 0.12 0.91 8.05 -52.48 -0.42 0.48 16 35 H 0.40 4.00 8.80 -40.82 -0.36 3.64 16 36 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.14 3.04 5.62 -52.49 -0.30 2.74 16 38 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.13 2.26 6.41 -52.48 -0.34 1.92 16 41 H 0.06 0.51 8.08 -51.93 -0.42 0.10 16 42 H 0.11 1.40 5.87 -51.93 -0.30 1.09 16 43 H 0.07 0.96 6.32 -51.94 -0.33 0.63 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -30.63 383.81 -8.52 -39.15 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.38 Total: 5.50 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -2.83 Total: -19.83 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.72 Total: -33.53 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.05 Total: -14.07 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.63 -8.52 -39.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319972928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.781 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds