Wall clock time and date at job start Tue Mar 31 2020 11:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46714 * 2 1 4 4 C 1.50702 * 109.46967 * 180.02562 * 3 2 1 5 5 C 1.33017 * 120.00051 * 95.00078 * 4 3 2 6 6 C 1.47063 * 120.00173 * 173.66882 * 5 4 3 7 7 O 1.21629 * 119.99960 * 3.54818 * 6 5 4 8 8 N 1.34780 * 120.00034 * 183.54988 * 6 5 4 9 9 C 1.39894 * 119.99892 * 174.86639 * 8 6 5 10 10 C 1.38946 * 120.00206 * 146.56838 * 9 8 6 11 11 C 1.37998 * 119.99844 * 180.02562 * 10 9 8 12 12 C 1.38909 * 120.00092 * 0.02562 * 11 10 9 13 13 O 1.35773 * 119.99833 * 179.97438 * 12 11 10 14 14 C 1.34819 * 116.99952 * 4.72790 * 13 12 11 15 15 H 1.08001 * 119.99239 * 354.94533 * 14 13 12 16 16 C 1.38630 * 120.00274 * 174.94758 * 14 13 12 17 17 N 1.31570 * 120.00149 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99813 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46975 * 90.00549 * 18 16 14 20 20 H 1.48498 * 109.47181 * 210.00128 * 18 16 14 21 21 H 1.48492 * 109.47543 * 330.00613 * 18 16 14 22 22 C 1.38915 * 120.01121 * 0.25398 * 12 11 10 23 23 C 1.38005 * 119.99824 * 359.44781 * 22 12 11 24 24 C 1.50707 * 120.00133 * 275.00329 * 4 3 2 25 25 C 1.52998 * 109.47053 * 263.16392 * 24 4 3 26 26 C 1.53001 * 109.46961 * 179.97438 * 25 24 4 27 27 H 1.09005 * 109.46752 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46803 * 299.99819 * 1 2 3 29 29 H 1.08994 * 109.47484 * 59.99743 * 1 2 3 30 30 H 1.08997 * 109.47037 * 240.00581 * 2 1 3 31 31 H 1.08994 * 109.47484 * 120.00257 * 2 1 3 32 32 H 1.09003 * 109.47338 * 60.00508 * 3 2 1 33 33 H 1.08996 * 109.47861 * 300.00437 * 3 2 1 34 34 H 1.08004 * 119.99712 * 353.66934 * 5 4 3 35 35 H 0.96996 * 119.99963 * 354.86279 * 8 6 5 36 36 H 1.08004 * 120.00157 * 0.02562 * 10 9 8 37 37 H 1.07991 * 119.99871 * 179.97438 * 11 10 9 38 38 H 0.96997 * 120.00536 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.00228 * 179.72482 * 22 12 11 40 40 H 1.08003 * 119.99855 * 180.25026 * 23 22 12 41 41 H 1.09001 * 109.46856 * 23.16711 * 24 4 3 42 42 H 1.09003 * 109.46942 * 143.16332 * 24 4 3 43 43 H 1.08989 * 109.47229 * 300.00161 * 25 24 4 44 44 H 1.09000 * 109.46808 * 60.00218 * 25 24 4 45 45 H 1.09001 * 109.46959 * 300.00325 * 26 25 24 46 46 H 1.08991 * 109.47251 * 60.00226 * 26 25 24 47 47 H 1.09001 * 109.46711 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2116 1.5432 -1.1485 6 6 5.6755 1.6835 -1.1407 7 8 6.2847 1.6428 -0.0888 8 7 6.3419 1.8573 -2.2992 9 6 7.7199 2.0980 -2.2841 10 6 8.5209 1.6151 -3.3117 11 6 9.8803 1.8521 -3.2964 12 6 10.4479 2.5731 -2.2535 13 8 11.7855 2.8058 -2.2383 14 6 12.4904 2.3958 -3.3119 15 1 12.0030 1.8349 -4.0956 16 6 13.8406 2.6942 -3.4098 17 7 14.5286 2.2936 -4.4574 18 14 14.6833 3.6650 -2.0545 19 1 15.2185 2.7282 -1.0341 20 1 15.7985 4.4568 -2.6328 21 1 13.7029 4.5815 -1.4191 22 6 9.6482 3.0510 -1.2231 23 6 8.2878 2.8194 -1.2413 24 6 4.3011 1.3286 1.2992 25 6 4.7049 2.7243 1.7786 26 6 5.4699 2.6086 3.0985 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.6760 1.5218 -2.0862 35 1 5.8662 1.8154 -3.1435 36 1 8.0796 1.0542 -4.1223 37 1 10.5029 1.4764 -4.0948 38 1 15.4733 2.5027 -4.5261 39 1 10.0903 3.6077 -0.4101 40 1 7.6655 3.1944 -0.4423 41 1 3.6648 0.8570 2.0482 42 1 5.1950 0.7233 1.1487 43 1 5.3410 3.1957 1.0296 44 1 3.8109 3.3295 1.9290 45 1 4.8333 2.1372 3.8473 46 1 6.3638 2.0032 2.9485 47 1 5.7572 3.6030 3.4403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319972928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:31 Heat of formation + Delta-G solvation = -54.556950 kcal Electronic energy + Delta-G solvation = -25763.949884 eV Core-core repulsion = 22104.664397 eV Total energy + Delta-G solvation = -3659.285487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58757 -40.57300 -38.73893 -37.50068 -35.50692 -34.83750 -34.34649 -32.91294 -31.90864 -30.06727 -28.10163 -27.55552 -27.01006 -24.03144 -23.68701 -22.56335 -22.53607 -21.61613 -19.97519 -19.61136 -19.13644 -17.96838 -17.91704 -16.65998 -16.31909 -16.24862 -15.93331 -15.69164 -15.59876 -15.28469 -15.00369 -14.80465 -14.47297 -14.45043 -14.19532 -14.06155 -13.94680 -13.83189 -13.38323 -13.27756 -13.02842 -12.74182 -12.66334 -12.57549 -12.36541 -12.22938 -12.02791 -11.98972 -11.88099 -11.53471 -11.42330 -11.31117 -11.08648 -10.67769 -10.32837 -10.00849 -9.85909 -8.61368 -8.48957 -6.20002 0.25622 0.49328 0.70820 1.31717 1.35637 1.51824 2.24416 2.28565 2.32100 2.79008 3.04990 3.16803 3.70240 3.79430 4.01802 4.09266 4.14314 4.19400 4.25782 4.31625 4.35463 4.46266 4.55317 4.58616 4.65301 4.71326 4.73507 4.82004 4.90652 4.97266 5.02710 5.07912 5.09567 5.14041 5.19288 5.25075 5.27686 5.36412 5.42070 5.45508 5.49683 5.51573 5.56810 5.65042 5.74226 5.76896 5.92397 6.21385 6.64638 6.85455 7.33787 7.60066 8.62193 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.002414 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.469481 B =11595.013334 C =12507.230364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.013 4.013 5 C -0.233 4.233 6 C 0.531 3.469 7 O -0.548 6.548 8 N -0.653 5.653 9 C 0.079 3.921 10 C -0.090 4.090 11 C -0.214 4.214 12 C 0.111 3.889 13 O -0.245 6.245 14 C -0.397 4.397 15 H 0.086 0.914 16 C 0.010 3.990 17 N -0.921 5.921 18 Si 0.967 3.033 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.264 1.264 22 C -0.175 4.175 23 C -0.074 4.074 24 C -0.099 4.099 25 C -0.101 4.101 26 C -0.146 4.146 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.422 0.578 36 H 0.151 0.849 37 H 0.120 0.880 38 H 0.284 0.716 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.038 0.962 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.017 -1.450 8.653 31.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.124 4.124 4 C -0.015 4.015 5 C -0.254 4.254 6 C 0.324 3.676 7 O -0.429 6.429 8 N -0.299 5.299 9 C -0.015 4.015 10 C -0.110 4.110 11 C -0.233 4.233 12 C 0.061 3.939 13 O -0.153 6.153 14 C -0.473 4.473 15 H 0.103 0.897 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.191 1.191 21 H -0.189 1.189 22 C -0.195 4.195 23 C -0.094 4.094 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.203 4.203 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.174 0.826 35 H 0.260 0.740 36 H 0.168 0.832 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.154 0.846 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.312 -1.374 9.441 30.825 hybrid contribution 0.964 0.055 -0.493 1.084 sum -28.347 -1.319 8.949 29.755 Atomic orbital electron populations 1.21775 0.94629 1.02101 1.02367 1.21470 0.96557 0.95200 1.02362 1.20898 0.88658 0.98368 1.04519 1.22769 0.96695 0.87718 0.94334 1.22372 0.90733 1.11712 1.00585 1.19266 0.89458 0.75982 0.82926 1.90767 1.70654 1.50201 1.31232 1.43189 1.05474 1.70839 1.10413 1.17413 0.84251 1.01911 0.97917 1.20810 0.91619 0.99230 0.99359 1.21134 0.96107 1.05307 1.00783 1.19586 0.83384 0.95550 0.95331 1.83526 1.16030 1.74079 1.41669 1.20729 0.92904 1.35227 0.98480 0.89690 1.25234 0.95907 0.98094 0.99581 1.69725 1.09874 1.46987 1.29650 0.85259 0.78067 0.79112 0.78562 1.19268 1.19146 1.18883 1.20307 0.93172 1.06571 0.99447 1.20773 0.93217 0.96931 0.98497 1.21001 0.99885 0.98602 0.94056 1.21260 0.99518 0.96033 0.97087 1.21688 1.00019 1.01368 0.97215 0.92471 0.92298 0.92070 0.91845 0.92194 0.89507 0.89233 0.82644 0.73968 0.83173 0.86213 0.90611 0.85585 0.84583 0.90872 0.90477 0.93373 0.91670 0.91842 0.94319 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.36 16 2 C -0.12 -1.07 5.92 30.59 0.18 -0.89 16 3 C -0.09 -0.82 5.35 29.85 0.16 -0.66 16 4 C -0.01 -0.20 4.62 -17.61 -0.08 -0.28 16 5 C -0.23 -3.82 9.60 23.42 0.22 -3.60 16 6 C 0.53 12.96 7.20 86.56 0.62 13.58 16 7 O -0.55 -16.98 8.91 -4.12 -0.04 -17.01 16 8 N -0.65 -15.46 5.33 -306.65 -1.64 -17.09 16 9 C 0.08 2.57 6.28 38.19 0.24 2.81 16 10 C -0.09 -3.08 9.96 22.38 0.22 -2.85 16 11 C -0.21 -9.35 9.16 22.37 0.20 -9.14 16 12 C 0.11 5.34 6.65 22.59 0.15 5.49 16 13 O -0.25 -13.61 8.58 -22.88 -0.20 -13.81 16 14 C -0.40 -23.52 9.94 67.91 0.68 -22.85 16 15 H 0.09 5.20 5.42 -2.91 -0.02 5.18 16 16 C 0.01 0.60 5.49 84.83 0.47 1.06 16 17 N -0.92 -55.18 13.96 21.61 0.30 -54.88 16 18 Si 0.97 46.23 28.62 68.60 1.96 48.19 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 22 C -0.18 -7.33 9.99 22.38 0.22 -7.11 16 23 C -0.07 -2.70 8.65 22.38 0.19 -2.50 16 24 C -0.10 -1.88 4.64 29.85 0.14 -1.74 16 25 C -0.10 -2.05 5.35 30.59 0.16 -1.89 16 26 C -0.15 -2.94 9.91 71.98 0.71 -2.23 16 27 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.63 8.03 -2.39 -0.02 0.61 16 34 H 0.16 1.53 8.05 -2.91 -0.02 1.51 16 35 H 0.42 6.70 8.80 -92.71 -0.82 5.89 16 36 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 37 H 0.12 5.63 5.62 -2.91 -0.02 5.61 16 38 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.14 4.74 6.41 -2.91 -0.02 4.72 16 41 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 42 H 0.08 1.98 5.87 -2.39 -0.01 1.96 16 43 H 0.05 1.22 6.32 -2.39 -0.02 1.20 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.78 383.81 5.76 -64.02 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.15 Total: 23.74 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 5.21 Total: -33.15 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.33 Total: -71.97 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.23 Total: -30.82 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.96 Total: 48.19 kcal Total: -69.78 5.76 -64.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319972928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.461 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds