Wall clock time and date at job start Tue Mar 31 2020 12:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.53001 * 109.47163 * 120.00204 * 2 1 3 5 5 N 1.46504 * 109.46955 * 299.99831 * 4 2 1 6 6 C 1.34774 * 119.99875 * 179.97438 * 5 4 2 7 7 O 1.21592 * 120.00073 * 0.02562 * 6 5 4 8 8 C 1.47531 * 120.00177 * 179.97438 * 6 5 4 9 9 C 1.39673 * 120.19611 * 0.27949 * 8 6 5 10 10 C 1.37821 * 119.91819 * 180.29047 * 9 8 6 11 11 C 1.38573 * 120.32718 * 359.70642 * 10 9 8 12 12 C 1.38027 * 120.40016 * 359.97438 * 11 10 9 13 13 C 1.38834 * 120.07227 * 0.02584 * 12 11 10 14 14 O 1.35519 * 120.16541 * 179.97438 * 13 12 11 15 15 C 1.34815 * 116.99638 * 5.12291 * 14 13 12 16 16 H 1.08000 * 120.00118 * 354.61020 * 15 14 13 17 17 C 1.38700 * 119.99889 * 174.60688 * 15 14 13 18 18 N 1.31524 * 119.99781 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00134 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47173 * 59.99961 * 19 17 15 21 21 H 1.48505 * 109.47143 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47007 * 299.99770 * 19 17 15 23 23 C 1.53005 * 109.46803 * 240.00193 * 2 1 3 24 24 C 1.53780 * 113.61556 * 42.09888 * 23 2 1 25 25 C 1.53780 * 87.08136 * 220.02023 * 24 23 2 26 26 C 1.53781 * 113.61175 * 304.60299 * 23 2 1 27 27 H 1.09007 * 109.46826 * 292.79500 * 1 2 3 28 28 H 1.08997 * 109.47024 * 52.79117 * 1 2 3 29 29 H 1.09001 * 109.47184 * 172.79748 * 1 2 3 30 30 H 1.09001 * 109.46582 * 174.78436 * 3 2 1 31 31 H 1.09002 * 109.46929 * 294.78251 * 3 2 1 32 32 H 1.08999 * 109.46979 * 54.78570 * 3 2 1 33 33 H 1.09000 * 109.47036 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.46990 * 59.99840 * 4 2 1 35 35 H 0.96993 * 120.00094 * 0.02562 * 5 4 2 36 36 H 1.08001 * 120.04131 * 0.02562 * 9 8 6 37 37 H 1.08006 * 119.84169 * 179.71913 * 10 9 8 38 38 H 1.07994 * 119.80375 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.96571 * 180.02562 * 12 11 10 40 40 H 0.97008 * 119.99563 * 180.02562 * 18 17 15 41 41 H 1.08995 * 112.84847 * 173.41002 * 23 2 1 42 42 H 1.08997 * 113.61312 * 334.57099 * 24 23 2 43 43 H 1.08998 * 113.61141 * 105.47045 * 24 23 2 44 44 H 1.08997 * 113.61187 * 270.88770 * 25 24 23 45 45 H 1.09001 * 113.61157 * 139.98191 * 25 24 23 46 46 H 1.08999 * 113.61623 * 254.53082 * 26 23 2 47 47 H 1.09000 * 113.61861 * 25.43262 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5517 -0.0307 2.4454 6 6 1.8769 -0.4915 3.6695 7 8 2.5759 -1.4801 3.7810 8 6 1.3856 0.2043 4.8741 9 6 0.5785 1.3375 4.7508 10 6 0.1277 1.9865 5.8800 11 6 0.4662 1.5170 7.1390 12 6 1.2576 0.3945 7.2764 13 6 1.7208 -0.2721 6.1502 14 8 2.4984 -1.3741 6.2829 15 6 2.6991 -1.8344 7.5340 16 1 2.3216 -1.2800 8.3804 17 6 3.3904 -3.0201 7.7341 18 7 3.8505 -3.6951 6.7032 19 14 3.6679 -3.6584 9.4675 20 1 2.3569 -3.8921 10.1248 21 1 4.4265 -4.9337 9.4099 22 1 4.4403 -2.6571 10.2459 23 6 2.0400 -0.7212 -1.2493 24 6 1.2596 -0.3678 -2.5264 25 6 1.3638 -1.8540 -2.9072 26 6 1.4908 -2.1494 -1.4034 27 1 -0.3633 0.3982 0.9475 28 1 -0.3633 0.6214 -0.8185 29 1 -0.3633 -1.0196 -0.1288 30 1 3.1260 1.4439 0.0934 31 1 1.7549 1.9286 -0.9331 32 1 1.6024 1.9826 0.8396 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7577 2.3564 36 1 0.3115 1.7072 3.7718 37 1 -0.4927 2.8654 5.7832 38 1 0.1079 2.0319 8.0181 39 1 1.5168 0.0344 8.2611 40 1 4.3336 -4.5246 6.8432 41 1 3.1218 -0.6547 -1.3645 42 1 0.2387 -0.0362 -2.3365 43 1 1.8024 0.2948 -3.2004 44 1 2.2607 -2.0968 -3.4771 45 1 0.4547 -2.2546 -3.3556 46 1 2.2203 -2.9252 -1.1708 47 1 0.5332 -2.3050 -0.9065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324523650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:16 Heat of formation + Delta-G solvation = -22.644718 kcal Electronic energy + Delta-G solvation = -26819.090545 eV Core-core repulsion = 23161.188876 eV Total energy + Delta-G solvation = -3657.901669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25904 -39.38250 -37.94036 -36.30853 -35.48715 -32.51079 -32.28593 -30.38252 -28.89675 -27.47440 -26.94141 -25.47477 -25.39853 -24.96203 -22.76377 -21.37263 -20.26381 -19.82536 -18.42387 -17.99559 -17.55291 -16.24672 -15.64500 -15.62758 -15.03976 -14.78358 -14.66278 -14.33399 -14.08973 -13.85799 -13.72263 -13.65805 -13.26603 -12.94093 -12.84191 -12.55577 -12.39490 -12.26314 -11.90911 -11.69540 -11.62198 -11.55258 -11.28745 -11.10837 -11.08736 -10.93935 -10.86491 -10.76861 -10.46351 -10.41915 -10.12924 -10.08152 -9.54239 -8.85500 -8.78435 -8.44872 -8.23298 -7.28165 -6.41940 -4.02085 1.75082 2.34319 3.12979 3.15159 3.17523 3.77421 3.81154 3.95509 4.41679 4.48570 4.57006 4.67609 4.70903 4.91133 4.99885 5.07211 5.09394 5.20043 5.31363 5.48039 5.52846 5.53851 5.56581 5.59136 5.65512 5.72688 5.75061 5.78349 5.80280 5.93287 5.95015 5.98581 6.06163 6.11448 6.14313 6.15854 6.25319 6.31240 6.47887 6.58646 6.72174 6.93688 7.05649 7.08501 7.26453 7.31448 7.71903 7.94745 8.20422 8.97497 9.17789 9.70418 10.71760 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.003367 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.573292 B = 8312.997237 C = 9866.463338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.140 4.140 4 C 0.137 3.863 5 N -0.741 5.741 6 C 0.552 3.448 7 O -0.502 6.502 8 C -0.226 4.226 9 C -0.039 4.039 10 C -0.231 4.231 11 C -0.051 4.051 12 C -0.239 4.239 13 C 0.189 3.811 14 O -0.123 6.123 15 C -0.405 4.405 16 H 0.093 0.907 17 C 0.045 3.955 18 N -0.833 5.833 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.096 4.096 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.142 4.142 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.390 0.610 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.272 0.728 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 8.912 -14.081 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.197 4.197 4 C 0.013 3.987 5 N -0.398 5.398 6 C 0.342 3.658 7 O -0.376 6.376 8 C -0.231 4.231 9 C -0.058 4.058 10 C -0.250 4.250 11 C -0.070 4.070 12 C -0.258 4.258 13 C 0.129 3.871 14 O -0.021 6.021 15 C -0.481 4.481 16 H 0.110 0.890 17 C -0.163 4.163 18 N -0.464 5.464 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.115 4.115 24 C -0.176 4.176 25 C -0.181 4.181 26 C -0.179 4.179 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.226 0.774 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.021 7.738 -14.209 17.263 hybrid contribution -0.167 0.189 0.913 0.947 sum -6.188 7.927 -13.296 16.671 Atomic orbital electron populations 1.22040 0.94430 1.02293 1.01651 1.20692 0.95908 0.95717 0.94277 1.21836 1.01381 0.95023 1.01476 1.21169 0.98866 0.95902 0.82776 1.45940 1.55839 1.32675 1.05348 1.18226 0.80666 0.84364 0.82593 1.90945 1.35929 1.24720 1.86056 1.18886 1.10931 1.02197 0.91070 1.20740 0.94364 0.93027 0.97644 1.20450 1.08597 1.03473 0.92520 1.20886 0.94889 0.94497 0.96734 1.21157 1.06056 0.99570 0.98995 1.19286 0.88114 0.87753 0.91906 1.84181 1.53430 1.34176 1.30351 1.21448 1.37787 1.07020 0.81799 0.88957 1.25380 0.95992 0.95207 0.99710 1.70128 1.31766 1.14453 1.30034 0.85805 0.78941 0.78531 0.80276 1.19384 1.20162 1.19385 1.22511 0.99772 0.95738 0.93474 1.23050 1.01068 0.96482 0.96967 1.22794 1.01703 0.96779 0.96783 1.23047 1.01920 0.96875 0.96071 0.92466 0.92275 0.92011 0.92399 0.92560 0.92615 0.92033 0.91821 0.77425 0.87232 0.87332 0.87225 0.85109 0.91841 0.89152 0.89527 0.91921 0.90490 0.91758 0.91396 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.42 37.16 0.28 -1.12 16 2 C -0.07 -0.68 0.43 -154.50 -0.07 -0.75 16 3 C -0.14 -1.34 8.20 37.16 0.30 -1.04 16 4 C 0.14 2.01 4.42 -4.04 -0.02 2.00 16 5 N -0.74 -12.14 4.87 -61.35 -0.30 -12.43 16 6 C 0.55 12.35 7.76 -12.47 -0.10 12.25 16 7 O -0.50 -14.01 15.17 -16.57 -0.25 -14.26 16 8 C -0.23 -4.98 5.89 -104.81 -0.62 -5.60 16 9 C -0.04 -0.67 9.53 -39.20 -0.37 -1.05 16 10 C -0.23 -3.83 10.02 -39.61 -0.40 -4.23 16 11 C -0.05 -0.92 10.03 -39.54 -0.40 -1.32 16 12 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 13 C 0.19 4.76 6.66 -38.60 -0.26 4.50 16 14 O -0.12 -3.69 7.84 -21.05 -0.16 -3.85 16 15 C -0.40 -11.58 9.49 30.90 0.29 -11.29 16 16 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 17 C 0.04 1.26 5.49 -17.51 -0.10 1.17 16 18 N -0.83 -25.34 13.67 55.48 0.76 -24.58 16 19 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.10 -0.91 3.03 -89.81 -0.27 -1.19 16 24 C -0.14 -1.11 7.17 -25.92 -0.19 -1.29 16 25 C -0.14 -1.17 8.08 -25.92 -0.21 -1.38 16 26 C -0.14 -1.38 6.70 -25.92 -0.17 -1.56 16 27 H 0.06 0.56 6.69 -51.93 -0.35 0.22 16 28 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 29 H 0.06 0.61 5.98 -51.93 -0.31 0.29 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.46 7.96 -51.93 -0.41 0.05 16 32 H 0.05 0.53 7.02 -51.93 -0.36 0.17 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.03 7.59 -51.93 -0.39 0.64 16 35 H 0.39 5.21 4.23 -40.82 -0.17 5.04 16 36 H 0.11 1.48 6.40 -52.49 -0.34 1.14 16 37 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.66 5.73 -51.93 -0.30 0.36 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.86 6.03 -51.93 -0.31 0.55 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -34.20 368.30 -8.87 -43.08 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.80 Total: 8.27 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.65 Total: -17.44 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.46 Total: -37.01 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.42 Total: -18.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.20 -8.87 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324523650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.431 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds