Wall clock time and date at job start Tue Mar 31 2020 12:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.53001 * 109.47163 * 120.00204 * 2 1 3 5 5 N 1.46504 * 109.46955 * 299.99831 * 4 2 1 6 6 C 1.34774 * 119.99875 * 179.97438 * 5 4 2 7 7 O 1.21592 * 120.00073 * 0.02562 * 6 5 4 8 8 C 1.47531 * 120.00177 * 179.97438 * 6 5 4 9 9 C 1.39673 * 120.19611 * 0.27949 * 8 6 5 10 10 C 1.37821 * 119.91819 * 180.29047 * 9 8 6 11 11 C 1.38573 * 120.32718 * 359.70642 * 10 9 8 12 12 C 1.38027 * 120.40016 * 359.97438 * 11 10 9 13 13 C 1.38834 * 120.07227 * 0.02584 * 12 11 10 14 14 O 1.35519 * 120.16541 * 179.97438 * 13 12 11 15 15 C 1.34815 * 116.99638 * 5.12291 * 14 13 12 16 16 H 1.08000 * 120.00118 * 354.61020 * 15 14 13 17 17 C 1.38700 * 119.99889 * 174.60688 * 15 14 13 18 18 N 1.31524 * 119.99781 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00134 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47173 * 59.99961 * 19 17 15 21 21 H 1.48505 * 109.47143 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47007 * 299.99770 * 19 17 15 23 23 C 1.53005 * 109.46803 * 240.00193 * 2 1 3 24 24 C 1.53780 * 113.61556 * 42.09888 * 23 2 1 25 25 C 1.53780 * 87.08136 * 220.02023 * 24 23 2 26 26 C 1.53781 * 113.61175 * 304.60299 * 23 2 1 27 27 H 1.09007 * 109.46826 * 292.79500 * 1 2 3 28 28 H 1.08997 * 109.47024 * 52.79117 * 1 2 3 29 29 H 1.09001 * 109.47184 * 172.79748 * 1 2 3 30 30 H 1.09001 * 109.46582 * 174.78436 * 3 2 1 31 31 H 1.09002 * 109.46929 * 294.78251 * 3 2 1 32 32 H 1.08999 * 109.46979 * 54.78570 * 3 2 1 33 33 H 1.09000 * 109.47036 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.46990 * 59.99840 * 4 2 1 35 35 H 0.96993 * 120.00094 * 0.02562 * 5 4 2 36 36 H 1.08001 * 120.04131 * 0.02562 * 9 8 6 37 37 H 1.08006 * 119.84169 * 179.71913 * 10 9 8 38 38 H 1.07994 * 119.80375 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.96571 * 180.02562 * 12 11 10 40 40 H 0.97008 * 119.99563 * 180.02562 * 18 17 15 41 41 H 1.08995 * 112.84847 * 173.41002 * 23 2 1 42 42 H 1.08997 * 113.61312 * 334.57099 * 24 23 2 43 43 H 1.08998 * 113.61141 * 105.47045 * 24 23 2 44 44 H 1.08997 * 113.61187 * 270.88770 * 25 24 23 45 45 H 1.09001 * 113.61157 * 139.98191 * 25 24 23 46 46 H 1.08999 * 113.61623 * 254.53082 * 26 23 2 47 47 H 1.09000 * 113.61861 * 25.43262 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5517 -0.0307 2.4454 6 6 1.8769 -0.4915 3.6695 7 8 2.5759 -1.4801 3.7810 8 6 1.3856 0.2043 4.8741 9 6 0.5785 1.3375 4.7508 10 6 0.1277 1.9865 5.8800 11 6 0.4662 1.5170 7.1390 12 6 1.2576 0.3945 7.2764 13 6 1.7208 -0.2721 6.1502 14 8 2.4984 -1.3741 6.2829 15 6 2.6991 -1.8344 7.5340 16 1 2.3216 -1.2800 8.3804 17 6 3.3904 -3.0201 7.7341 18 7 3.8505 -3.6951 6.7032 19 14 3.6679 -3.6584 9.4675 20 1 2.3569 -3.8921 10.1248 21 1 4.4265 -4.9337 9.4099 22 1 4.4403 -2.6571 10.2459 23 6 2.0400 -0.7212 -1.2493 24 6 1.2596 -0.3678 -2.5264 25 6 1.3638 -1.8540 -2.9072 26 6 1.4908 -2.1494 -1.4034 27 1 -0.3633 0.3982 0.9475 28 1 -0.3633 0.6214 -0.8185 29 1 -0.3633 -1.0196 -0.1288 30 1 3.1260 1.4439 0.0934 31 1 1.7549 1.9286 -0.9331 32 1 1.6024 1.9826 0.8396 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7577 2.3564 36 1 0.3115 1.7072 3.7718 37 1 -0.4927 2.8654 5.7832 38 1 0.1079 2.0319 8.0181 39 1 1.5168 0.0344 8.2611 40 1 4.3336 -4.5246 6.8432 41 1 3.1218 -0.6547 -1.3645 42 1 0.2387 -0.0362 -2.3365 43 1 1.8024 0.2948 -3.2004 44 1 2.2607 -2.0968 -3.4771 45 1 0.4547 -2.2546 -3.3556 46 1 2.2203 -2.9252 -1.1708 47 1 0.5332 -2.3050 -0.9065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324523650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:16 Heat of formation + Delta-G solvation = -43.883894 kcal Electronic energy + Delta-G solvation = -26820.011545 eV Core-core repulsion = 23161.188876 eV Total energy + Delta-G solvation = -3658.822669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46846 -40.80117 -39.60968 -38.02312 -36.70950 -34.34260 -33.85871 -31.91217 -30.56851 -28.24753 -28.05529 -27.32920 -26.18903 -26.06264 -24.29468 -23.02510 -21.50841 -21.10765 -19.85055 -19.51897 -18.93413 -17.91207 -17.05525 -16.51294 -16.36804 -16.33074 -16.10141 -15.80506 -15.68678 -15.45271 -15.26404 -14.78408 -14.66613 -14.29484 -14.12878 -13.77746 -13.55320 -13.53828 -13.28534 -12.97676 -12.71738 -12.68096 -12.51243 -12.46412 -12.36200 -12.34004 -12.15480 -11.91502 -11.77869 -11.43709 -11.19575 -10.97625 -10.86514 -10.82647 -10.55895 -10.08119 -9.76906 -9.03377 -8.44562 -6.15941 0.12780 0.72999 1.31564 1.44824 1.49728 2.11188 2.15846 2.31030 2.87802 3.22893 3.46878 3.54777 3.70555 3.76982 3.94003 4.00715 4.07472 4.08354 4.18566 4.27221 4.30494 4.44980 4.52008 4.62532 4.66470 4.75383 4.83940 4.87232 4.90054 4.93772 4.98113 5.05696 5.07337 5.07955 5.12116 5.14016 5.18477 5.22962 5.36729 5.42692 5.48195 5.48946 5.57853 5.61509 5.69579 5.72606 5.95877 6.17269 6.71467 6.94410 7.50547 7.80732 8.75781 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.003367 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.573292 B = 8312.997237 C = 9866.463338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C -0.139 4.139 4 C 0.136 3.864 5 N -0.712 5.712 6 C 0.545 3.455 7 O -0.572 6.572 8 C -0.245 4.245 9 C -0.030 4.030 10 C -0.200 4.200 11 C -0.040 4.040 12 C -0.258 4.258 13 C 0.148 3.852 14 O -0.189 6.189 15 C -0.429 4.429 16 H 0.107 0.893 17 C -0.022 4.022 18 N -0.906 5.906 19 Si 1.022 2.978 20 H -0.254 1.254 21 H -0.273 1.273 22 H -0.253 1.253 23 C -0.101 4.101 24 C -0.124 4.124 25 C -0.138 4.138 26 C -0.153 4.153 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.041 0.959 35 H 0.409 0.591 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.123 0.877 40 H 0.270 0.730 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 13.252 -14.737 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.054 4.054 3 C -0.196 4.196 4 C 0.012 3.988 5 N -0.368 5.368 6 C 0.335 3.665 7 O -0.451 6.451 8 C -0.250 4.250 9 C -0.049 4.049 10 C -0.218 4.218 11 C -0.058 4.058 12 C -0.277 4.277 13 C 0.093 3.907 14 O -0.092 6.092 15 C -0.505 4.505 16 H 0.124 0.876 17 C -0.222 4.222 18 N -0.541 5.541 19 Si 0.841 3.159 20 H -0.178 1.178 21 H -0.198 1.198 22 H -0.178 1.178 23 C -0.120 4.120 24 C -0.161 4.161 25 C -0.175 4.175 26 C -0.190 4.190 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.248 0.752 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.141 0.859 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.269 12.192 -14.904 21.371 hybrid contribution 0.572 -0.789 0.946 1.358 sum -8.697 11.403 -13.959 20.013 Atomic orbital electron populations 1.22060 0.93021 1.02597 1.02702 1.20630 0.96875 0.95971 0.91903 1.21850 1.00699 0.94078 1.03018 1.21277 0.97649 0.95643 0.84203 1.45672 1.54520 1.32540 1.04050 1.18589 0.79907 0.83622 0.84422 1.90925 1.39191 1.27866 1.87161 1.19319 1.11931 1.03825 0.89923 1.21276 0.92108 0.90727 1.00747 1.21178 1.06002 1.03515 0.91098 1.21438 0.92445 0.92481 0.99444 1.21309 1.07504 1.01234 0.97694 1.20099 0.88698 0.87422 0.94452 1.84186 1.57109 1.37066 1.30820 1.22013 1.38292 1.07799 0.82421 0.87573 1.26778 0.95414 0.95143 1.04826 1.70332 1.34986 1.15625 1.33191 0.84622 0.79478 0.77908 0.73939 1.17777 1.19801 1.17752 1.22545 0.99779 0.95536 0.94118 1.23005 1.01315 0.96356 0.95467 1.22783 1.02336 0.97147 0.95249 1.23105 1.01296 0.96739 0.97903 0.92536 0.89575 0.92643 0.93554 0.90103 0.92097 0.94305 0.94019 0.75152 0.82466 0.81715 0.82782 0.85899 0.92066 0.89798 0.88410 0.90654 0.90175 0.90827 0.93248 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 7.42 71.98 0.53 -1.86 16 2 C -0.05 -1.05 0.43 -52.18 -0.02 -1.07 16 3 C -0.14 -2.31 8.20 71.98 0.59 -1.72 16 4 C 0.14 4.19 4.42 86.38 0.38 4.58 16 5 N -0.71 -23.36 4.87 -466.27 -2.27 -25.64 16 6 C 0.54 25.55 7.76 86.69 0.67 26.22 16 7 O -0.57 -34.93 15.17 16.89 0.26 -34.67 16 8 C -0.25 -10.89 5.89 -19.99 -0.12 -11.00 16 9 C -0.03 -0.92 9.53 22.52 0.21 -0.71 16 10 C -0.20 -5.34 10.02 22.25 0.22 -5.12 16 11 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 12 C -0.26 -11.18 9.16 22.36 0.20 -10.98 16 13 C 0.15 7.80 6.66 22.91 0.15 7.95 16 14 O -0.19 -12.29 7.84 0.85 0.01 -12.28 16 15 C -0.43 -26.41 9.49 67.93 0.64 -25.77 16 16 H 0.11 5.83 5.20 -2.91 -0.02 5.82 16 17 C -0.02 -1.35 5.49 84.85 0.47 -0.89 16 18 N -0.91 -60.20 13.67 21.62 0.30 -59.90 16 19 Si 1.02 44.82 29.55 68.60 2.03 46.84 16 20 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 23 C -0.10 -1.84 3.03 -10.27 -0.03 -1.87 16 24 C -0.12 -1.64 7.17 31.12 0.22 -1.42 16 25 C -0.14 -2.05 8.08 31.12 0.25 -1.80 16 26 C -0.15 -3.04 6.70 31.12 0.21 -2.83 16 27 H 0.06 0.92 6.69 -2.38 -0.02 0.91 16 28 H 0.09 0.98 6.49 -2.39 -0.02 0.97 16 29 H 0.05 1.00 5.98 -2.39 -0.01 0.98 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.99 7.96 -2.39 -0.02 0.97 16 32 H 0.06 0.94 7.02 -2.39 -0.02 0.92 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.47 7.59 -2.39 -0.02 1.45 16 35 H 0.41 9.90 4.23 -92.71 -0.39 9.51 16 36 H 0.16 3.25 6.40 -2.91 -0.02 3.23 16 37 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 39 H 0.12 5.39 5.63 -2.91 -0.02 5.37 16 40 H 0.27 16.49 8.31 -92.70 -0.77 15.71 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 1.10 5.73 -2.39 -0.01 1.08 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.68 6.03 -2.39 -0.01 1.67 16 Total: -1.00 -88.00 368.30 5.73 -82.27 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.60 Total: 32.69 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 4.82 Total: -29.31 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.98 Total: -85.54 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: 0.26 Total: -46.96 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -88.00 5.73 -82.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324523650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.389 kcal (2) G-P(sol) polarization free energy of solvation -88.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds