Wall clock time and date at job start Tue Mar 31 2020 12:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46834 * 2 1 4 4 C 1.53002 * 109.47526 * 120.00020 * 2 1 3 5 5 C 1.50707 * 109.46693 * 300.00388 * 4 2 1 6 6 O 1.21273 * 120.00204 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99327 * 180.02562 * 5 4 2 8 8 C 1.46508 * 119.99681 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47169 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96224 * 270.02412 * 9 8 7 11 11 C 1.38281 * 120.13505 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96539 * 89.99807 * 9 8 7 24 24 C 1.53004 * 109.46993 * 240.00129 * 2 1 3 25 25 C 1.53002 * 117.49640 * 128.74511 * 24 2 1 26 26 C 1.53001 * 117.49894 * 60.08771 * 24 2 1 27 27 H 1.08997 * 109.47246 * 299.99543 * 1 2 3 28 28 H 1.08995 * 109.47579 * 60.00048 * 1 2 3 29 29 H 1.09009 * 109.46698 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47254 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47202 * 300.00121 * 3 2 1 32 32 H 1.08993 * 109.47264 * 59.99966 * 3 2 1 33 33 H 1.08997 * 109.46933 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.46850 * 59.99972 * 4 2 1 35 35 H 0.96993 * 120.00552 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.46757 * 59.99773 * 8 7 5 37 37 H 1.08998 * 109.46890 * 300.00426 * 8 7 5 38 38 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 39 39 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 41 41 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.03547 * 0.04988 * 23 9 8 43 43 H 1.08991 * 115.54855 * 274.41062 * 24 2 1 44 44 H 1.08999 * 117.50163 * 359.97438 * 25 24 2 45 45 H 1.09001 * 117.49984 * 145.02045 * 25 24 2 46 46 H 1.09001 * 117.49610 * 214.98041 * 26 24 2 47 47 H 1.08997 * 117.49855 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 8 0.8408 0.9754 2.3684 7 7 1.8638 -0.4710 3.7037 8 6 1.3759 0.2199 4.9000 9 6 1.8792 -0.4898 6.1304 10 6 1.1320 -1.5078 6.6951 11 6 1.5907 -2.1618 7.8238 12 6 2.8002 -1.8045 8.3871 13 6 3.5499 -0.7792 7.8260 14 8 4.7361 -0.4217 8.3809 15 6 5.0725 -1.0171 9.5428 16 1 4.4495 -1.8006 9.9483 17 6 6.2183 -0.6235 10.2172 18 7 6.9769 0.3312 9.7235 19 14 6.6840 -1.4479 11.8274 20 1 7.5500 -2.6220 11.5500 21 1 7.4186 -0.4823 12.6837 22 1 5.4536 -1.8950 12.5286 23 6 3.0860 -0.1236 6.6926 24 6 2.0400 -0.7212 -1.2493 25 6 3.0763 0.0040 -2.1101 26 6 1.6374 -0.1483 -2.6096 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1301 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 2.4221 -1.2591 3.7927 36 1 0.2858 0.2199 4.9003 37 1 1.7391 1.2476 4.8995 38 1 0.1884 -1.7924 6.2534 39 1 1.0049 -2.9559 8.2625 40 1 3.1603 -2.3191 9.2656 41 1 7.7783 0.6067 10.1954 42 1 3.6687 0.6715 6.2515 43 1 2.1254 -1.8045 -1.1647 44 1 3.3944 0.9951 -1.7867 45 1 3.8432 -0.6022 -2.5923 46 1 1.4582 -0.8547 -3.4202 47 1 1.0089 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327835680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:42 Heat of formation + Delta-G solvation = -24.745792 kcal Electronic energy + Delta-G solvation = -25661.736901 eV Core-core repulsion = 22003.744123 eV Total energy + Delta-G solvation = -3657.992778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39761 -39.20684 -38.38360 -36.82228 -34.63383 -33.61874 -32.36097 -31.00164 -29.26487 -28.24228 -27.41747 -25.80101 -25.03994 -23.48162 -22.43042 -21.73911 -20.85281 -20.43260 -18.59672 -17.85000 -17.23353 -16.91025 -16.12622 -15.64656 -15.58992 -15.13538 -14.89443 -14.61965 -14.39718 -14.01888 -13.77066 -13.65651 -13.48848 -13.36508 -12.82022 -12.53848 -12.40905 -12.36122 -11.91352 -11.78206 -11.69957 -11.40831 -11.39360 -11.20979 -11.09010 -10.95722 -10.86721 -10.84723 -10.72123 -10.49717 -10.46152 -10.05249 -9.51266 -9.43008 -8.93608 -8.90798 -8.25923 -7.35439 -6.51275 -4.10876 1.88411 2.24363 2.68355 3.07942 3.09670 3.14474 3.36363 3.60900 3.90695 4.39969 4.49262 4.53646 4.69905 4.78985 4.89517 4.96208 5.02209 5.05288 5.15642 5.26979 5.33334 5.40169 5.45192 5.52116 5.57495 5.65624 5.71095 5.72778 5.81840 5.83211 5.90514 5.91835 5.95111 6.01632 6.05444 6.16550 6.22825 6.33861 6.40272 6.53178 6.63009 6.79214 6.97187 7.16281 7.24822 7.33236 7.58711 7.69426 7.92803 8.30378 8.94066 9.62491 10.66451 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.002221 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.719233 B =12603.362582 C =13308.688492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.013 4.013 3 C -0.157 4.157 4 C -0.131 4.131 5 C 0.512 3.488 6 O -0.538 6.538 7 N -0.722 5.722 8 C 0.168 3.832 9 C -0.073 4.073 10 C -0.196 4.196 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.150 3.850 14 O -0.176 6.176 15 C -0.393 4.393 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.171 4.171 24 C -0.144 4.144 25 C -0.186 4.186 26 C -0.178 4.178 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.403 0.597 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.271 0.729 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.652 -3.824 -17.765 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 C -0.214 4.214 4 C -0.171 4.171 5 C 0.299 3.701 6 O -0.416 6.416 7 N -0.373 5.373 8 C 0.045 3.955 9 C -0.073 4.073 10 C -0.215 4.215 11 C -0.094 4.094 12 C -0.246 4.246 13 C 0.096 3.904 14 O -0.079 6.079 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.191 4.191 24 C -0.162 4.162 25 C -0.222 4.222 26 C -0.215 4.215 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.751 -2.812 -17.832 20.518 hybrid contribution 0.611 -1.026 0.935 1.517 sum -9.140 -3.838 -16.897 19.590 Atomic orbital electron populations 1.22073 0.93840 1.01385 1.03401 1.19736 0.96028 0.94916 0.90688 1.22229 1.00220 0.95452 1.03466 1.21747 1.02640 1.00382 0.92368 1.20635 0.80204 0.84660 0.84564 1.90563 1.38195 1.26471 1.86368 1.46210 1.53484 1.32219 1.05388 1.20138 0.98659 0.95516 0.81199 1.19277 0.94799 0.97228 0.96040 1.20476 1.01010 1.00455 0.99576 1.20747 0.95222 0.98272 0.95192 1.21239 0.97253 1.01886 1.04175 1.19328 0.86371 0.92241 0.92420 1.83981 1.28775 1.59373 1.35806 1.21323 1.09507 1.18949 0.97180 0.89032 1.25300 0.95374 0.96440 0.99368 1.70032 1.14008 1.26763 1.38730 0.85708 0.79068 0.78672 0.79965 1.19842 1.20204 1.19171 1.20085 0.97246 1.03636 0.98152 1.22370 1.03685 0.98770 0.91401 1.23167 0.92354 1.02732 1.03977 1.22917 0.98257 1.03273 0.97050 0.89639 0.93158 0.93587 0.93087 0.93171 0.89520 0.88785 0.89005 0.76295 0.91026 0.90936 0.87541 0.87296 0.85472 0.91929 0.86426 0.88005 0.88035 0.89219 0.89175 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.02 37.16 0.30 -1.22 16 2 C -0.01 -0.13 0.62 -154.50 -0.10 -0.22 16 3 C -0.16 -1.64 6.77 37.16 0.25 -1.38 16 4 C -0.13 -1.22 4.75 -27.88 -0.13 -1.35 16 5 C 0.51 6.27 7.24 -10.98 -0.08 6.19 16 6 O -0.54 -8.00 11.35 5.56 0.06 -7.94 16 7 N -0.72 -8.88 5.55 -61.47 -0.34 -9.22 16 8 C 0.17 2.38 5.80 -5.19 -0.03 2.35 16 9 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 10 C -0.20 -3.14 9.70 -39.53 -0.38 -3.52 16 11 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 12 C -0.23 -4.67 9.17 -39.40 -0.36 -5.03 16 13 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 14 O -0.18 -4.87 9.76 0.05 0.00 -4.87 16 15 C -0.39 -10.70 9.49 30.89 0.29 -10.40 16 16 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.79 13.67 55.48 0.76 -24.03 16 19 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 24 C -0.14 -1.18 5.15 -90.62 -0.47 -1.64 16 25 C -0.19 -1.45 9.57 -26.69 -0.26 -1.70 16 26 C -0.18 -1.36 9.39 -26.69 -0.25 -1.61 16 27 H 0.08 1.06 5.51 -51.93 -0.29 0.77 16 28 H 0.05 0.48 7.29 -51.93 -0.38 0.10 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.05 0.50 6.97 -51.93 -0.36 0.14 16 31 H 0.05 0.49 7.07 -51.93 -0.37 0.12 16 32 H 0.09 1.11 5.51 -51.93 -0.29 0.83 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.40 4.43 8.46 -40.82 -0.35 4.09 16 36 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.10 0.76 8.11 -51.93 -0.42 0.34 16 44 H 0.10 0.82 5.85 -51.93 -0.30 0.52 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.09 0.74 7.07 -51.93 -0.37 0.37 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -30.08 375.99 -8.82 -38.89 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.04 Total: 9.09 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.90 Total: -22.61 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.42 Total: -33.25 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.06 Total: -12.81 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.08 -8.82 -38.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327835680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.145 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds