Wall clock time and date at job start Tue Mar 31 2020 12:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46834 * 2 1 4 4 C 1.53002 * 109.47526 * 120.00020 * 2 1 3 5 5 C 1.50707 * 109.46693 * 300.00388 * 4 2 1 6 6 O 1.21273 * 120.00204 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99327 * 180.02562 * 5 4 2 8 8 C 1.46508 * 119.99681 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47169 * 180.02562 * 8 7 5 10 10 C 1.38328 * 119.96224 * 270.02412 * 9 8 7 11 11 C 1.38281 * 120.13505 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06679 * 359.68445 * 11 10 9 13 13 C 1.38852 * 119.93490 * 0.58817 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.70368 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46814 * 90.00164 * 19 17 15 21 21 H 1.48501 * 109.47378 * 210.00272 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00397 * 19 17 15 23 23 C 1.38073 * 119.96539 * 89.99807 * 9 8 7 24 24 C 1.53004 * 109.46993 * 240.00129 * 2 1 3 25 25 C 1.53002 * 117.49640 * 128.74511 * 24 2 1 26 26 C 1.53001 * 117.49894 * 60.08771 * 24 2 1 27 27 H 1.08997 * 109.47246 * 299.99543 * 1 2 3 28 28 H 1.08995 * 109.47579 * 60.00048 * 1 2 3 29 29 H 1.09009 * 109.46698 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47254 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47202 * 300.00121 * 3 2 1 32 32 H 1.08993 * 109.47264 * 59.99966 * 3 2 1 33 33 H 1.08997 * 109.46933 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.46850 * 59.99972 * 4 2 1 35 35 H 0.96993 * 120.00552 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.46757 * 59.99773 * 8 7 5 37 37 H 1.08998 * 109.46890 * 300.00426 * 8 7 5 38 38 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 39 39 H 1.07993 * 119.96315 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.03256 * 180.31909 * 12 11 10 41 41 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.03547 * 0.04988 * 23 9 8 43 43 H 1.08991 * 115.54855 * 274.41062 * 24 2 1 44 44 H 1.08999 * 117.50163 * 359.97438 * 25 24 2 45 45 H 1.09001 * 117.49984 * 145.02045 * 25 24 2 46 46 H 1.09001 * 117.49610 * 214.98041 * 26 24 2 47 47 H 1.08997 * 117.49855 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 8 0.8408 0.9754 2.3684 7 7 1.8638 -0.4710 3.7037 8 6 1.3759 0.2199 4.9000 9 6 1.8792 -0.4898 6.1304 10 6 1.1320 -1.5078 6.6951 11 6 1.5907 -2.1618 7.8238 12 6 2.8002 -1.8045 8.3871 13 6 3.5499 -0.7792 7.8260 14 8 4.7361 -0.4217 8.3809 15 6 5.0725 -1.0171 9.5428 16 1 4.4495 -1.8006 9.9483 17 6 6.2183 -0.6235 10.2172 18 7 6.9769 0.3312 9.7235 19 14 6.6840 -1.4479 11.8274 20 1 7.5500 -2.6220 11.5500 21 1 7.4186 -0.4823 12.6837 22 1 5.4536 -1.8950 12.5286 23 6 3.0860 -0.1236 6.6926 24 6 2.0400 -0.7212 -1.2493 25 6 3.0763 0.0040 -2.1101 26 6 1.6374 -0.1483 -2.6096 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1301 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 2.4221 -1.2591 3.7927 36 1 0.2858 0.2199 4.9003 37 1 1.7391 1.2476 4.8995 38 1 0.1884 -1.7924 6.2534 39 1 1.0049 -2.9559 8.2625 40 1 3.1603 -2.3191 9.2656 41 1 7.7783 0.6067 10.1954 42 1 3.6687 0.6715 6.2515 43 1 2.1254 -1.8045 -1.1647 44 1 3.3944 0.9951 -1.7867 45 1 3.8432 -0.6022 -2.5923 46 1 1.4582 -0.8547 -3.4202 47 1 1.0089 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327835680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:41 Heat of formation + Delta-G solvation = -41.656607 kcal Electronic energy + Delta-G solvation = -25662.470209 eV Core-core repulsion = 22003.744123 eV Total energy + Delta-G solvation = -3658.726086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35244 -40.77024 -39.28651 -38.38734 -35.79935 -34.39719 -34.28978 -32.34765 -30.82842 -29.24272 -28.23236 -27.47323 -26.49654 -24.26596 -23.26107 -23.01991 -22.42161 -21.42285 -19.66570 -19.25457 -18.83423 -17.94082 -17.07238 -16.83771 -16.64251 -16.49983 -16.18668 -16.08733 -15.61723 -15.47539 -15.10827 -14.76790 -14.43276 -14.39463 -14.22118 -13.91375 -13.77337 -13.44408 -13.32057 -12.99993 -12.71730 -12.52616 -12.47598 -12.37150 -12.28179 -12.17358 -12.11571 -11.98037 -11.82842 -11.63511 -11.21368 -11.09730 -10.82169 -10.70933 -10.49685 -10.00099 -9.73295 -9.03416 -8.47407 -6.15947 0.39266 0.70363 1.35590 1.44404 1.52910 1.72233 2.17148 2.31939 2.85772 2.98386 3.16017 3.40730 3.71605 3.75003 3.84066 4.02681 4.08891 4.13577 4.25558 4.30151 4.32690 4.40710 4.42565 4.53091 4.61861 4.70228 4.71046 4.74340 4.82943 4.86124 4.90923 5.02108 5.05628 5.11607 5.14319 5.15799 5.21366 5.25702 5.33802 5.38020 5.46126 5.56851 5.62230 5.69847 5.70944 5.72075 6.01346 6.16757 6.62122 6.97447 7.33761 7.77761 8.75695 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.002221 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.719233 B =12603.362582 C =13308.688492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.012 4.012 3 C -0.153 4.153 4 C -0.127 4.127 5 C 0.510 3.490 6 O -0.565 6.565 7 N -0.719 5.719 8 C 0.175 3.825 9 C -0.058 4.058 10 C -0.169 4.169 11 C -0.070 4.070 12 C -0.235 4.235 13 C 0.112 3.888 14 O -0.232 6.232 15 C -0.412 4.412 16 H 0.104 0.896 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.252 1.252 23 C -0.182 4.182 24 C -0.145 4.145 25 C -0.188 4.188 26 C -0.177 4.177 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.411 0.589 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.830 -6.403 -18.831 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 C -0.210 4.210 4 C -0.166 4.166 5 C 0.299 3.701 6 O -0.445 6.445 7 N -0.371 5.371 8 C 0.051 3.949 9 C -0.058 4.058 10 C -0.188 4.188 11 C -0.087 4.087 12 C -0.255 4.255 13 C 0.062 3.938 14 O -0.139 6.139 15 C -0.488 4.488 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.837 3.163 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.176 1.176 23 C -0.202 4.202 24 C -0.163 4.163 25 C -0.225 4.225 26 C -0.214 4.214 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.246 0.754 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.978 -5.421 -18.934 23.052 hybrid contribution 0.976 -0.216 1.016 1.426 sum -11.003 -5.637 -17.918 21.769 Atomic orbital electron populations 1.21999 0.94319 1.01675 1.02283 1.19714 0.95608 0.94326 0.91628 1.22165 1.00322 0.96257 1.02258 1.21793 1.03276 1.01110 0.90431 1.21177 0.79540 0.84293 0.85093 1.90577 1.39450 1.27742 1.86723 1.46126 1.53658 1.32385 1.04895 1.19987 0.99212 0.94760 0.80924 1.19476 0.93108 0.96911 0.96327 1.20995 1.01567 0.98178 0.98037 1.21165 0.93805 0.98758 0.95016 1.21368 0.98508 1.01341 1.04244 1.19868 0.86305 0.93957 0.93708 1.83947 1.31502 1.61538 1.36912 1.21822 1.10067 1.19345 0.97596 0.87904 1.26590 0.95088 0.97126 1.03327 1.70183 1.15153 1.29528 1.41064 0.84591 0.79184 0.77644 0.74839 1.18731 1.19841 1.17571 1.20220 0.98636 1.03593 0.97771 1.22337 1.03923 0.99268 0.90747 1.23203 0.92724 1.02568 1.03969 1.22970 0.98002 1.03300 0.97127 0.92029 0.92973 0.92518 0.92801 0.92887 0.92147 0.87630 0.86569 0.75351 0.89666 0.92233 0.83426 0.83366 0.86200 0.91881 0.87582 0.86673 0.88703 0.88237 0.87989 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.02 71.98 0.58 -2.15 16 2 C -0.01 -0.21 0.62 -52.18 -0.03 -0.24 16 3 C -0.15 -3.11 6.77 71.98 0.49 -2.62 16 4 C -0.13 -2.04 4.75 29.85 0.14 -1.90 16 5 C 0.51 11.65 7.24 87.66 0.63 12.29 16 6 O -0.56 -16.46 11.35 -3.01 -0.03 -16.50 16 7 N -0.72 -16.19 5.55 -466.77 -2.59 -18.78 16 8 C 0.17 4.62 5.80 85.63 0.50 5.12 16 9 C -0.06 -1.79 5.25 -19.88 -0.10 -1.89 16 10 C -0.17 -4.69 9.70 22.30 0.22 -4.48 16 11 C -0.07 -2.15 10.04 22.25 0.22 -1.93 16 12 C -0.24 -9.60 9.17 22.39 0.21 -9.39 16 13 C 0.11 5.34 6.65 22.58 0.15 5.49 16 14 O -0.23 -13.67 9.76 -22.74 -0.22 -13.89 16 15 C -0.41 -23.47 9.49 67.92 0.64 -22.82 16 16 H 0.10 5.32 5.21 -2.91 -0.02 5.31 16 17 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 18 N -0.92 -56.07 13.67 21.61 0.30 -55.78 16 19 Si 1.02 42.08 29.55 68.60 2.03 44.10 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 23 C -0.18 -7.40 9.65 22.39 0.22 -7.19 16 24 C -0.14 -1.99 5.15 -10.79 -0.06 -2.05 16 25 C -0.19 -2.55 9.57 30.62 0.29 -2.26 16 26 C -0.18 -2.33 9.39 30.62 0.29 -2.04 16 27 H 0.06 1.48 5.51 -2.39 -0.01 1.46 16 28 H 0.05 0.93 7.29 -2.39 -0.02 0.91 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 1.03 6.97 -2.39 -0.02 1.01 16 31 H 0.05 1.01 7.07 -2.38 -0.02 0.99 16 32 H 0.06 1.57 5.51 -2.39 -0.01 1.56 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.41 8.01 8.46 -92.71 -0.78 7.23 16 36 H 0.09 2.08 8.09 -2.38 -0.02 2.06 16 37 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 38 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 40 H 0.12 4.99 5.64 -2.91 -0.02 4.98 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.12 1.32 8.11 -2.39 -0.02 1.30 16 44 H 0.09 1.41 5.85 -2.39 -0.01 1.40 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.09 1.26 7.07 -2.39 -0.02 1.24 16 Total: -1.00 -70.56 375.99 4.52 -66.04 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.20 Total: 33.72 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 4.85 Total: -38.92 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.29 Total: -74.56 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.26 Total: -30.38 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -70.56 4.52 -66.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327835680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.382 kcal (2) G-P(sol) polarization free energy of solvation -70.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds