Wall clock time and date at job start Tue Mar 31 2020 12:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47499 * 295.50736 * 3 2 1 5 5 C 1.52999 * 109.47014 * 175.50065 * 3 2 1 6 6 C 1.53001 * 109.47089 * 174.99998 * 5 3 2 7 7 C 1.52999 * 109.47089 * 179.97438 * 6 5 3 8 8 N 1.46907 * 109.47106 * 55.50574 * 3 2 1 9 9 C 1.46901 * 110.99883 * 274.99845 * 8 3 2 10 10 C 1.52996 * 109.47170 * 180.02562 * 9 8 3 11 11 H 1.09005 * 109.46821 * 304.99627 * 10 9 8 12 12 O 1.42897 * 109.47135 * 64.99804 * 10 9 8 13 13 C 1.53002 * 109.47083 * 185.00193 * 10 9 8 14 14 O 1.42896 * 109.47056 * 175.00016 * 13 10 9 15 15 C 1.35682 * 116.99989 * 179.97438 * 14 13 10 16 16 C 1.39313 * 119.81650 * 359.72443 * 15 14 13 17 17 C 1.36430 * 120.18460 * 179.75962 * 16 15 14 18 18 C 1.40834 * 119.81253 * 0.51160 * 17 16 15 19 19 C 1.41218 * 120.18079 * 179.71840 * 18 17 16 20 20 H 1.08003 * 119.99797 * 155.17129 * 19 18 17 21 21 C 1.39886 * 120.00037 * 335.16664 * 19 18 17 22 22 N 1.30888 * 119.99957 * 342.15946 * 21 19 18 23 23 Si 1.86794 * 120.00113 * 162.15800 * 21 19 18 24 24 H 1.48502 * 109.47338 * 94.65474 * 23 21 19 25 25 H 1.48503 * 109.47560 * 214.66004 * 23 21 19 26 26 H 1.48509 * 109.47110 * 334.65897 * 23 21 19 27 27 C 1.40831 * 119.64134 * 359.74230 * 18 17 16 28 28 C 1.36439 * 119.80819 * 359.97438 * 27 18 17 29 29 H 4.18737 * 15.03812 * 359.97438 * 4 2 1 30 30 H 1.09000 * 109.47713 * 294.99965 * 5 3 2 31 31 H 1.08999 * 109.46951 * 55.00357 * 5 3 2 32 32 H 1.09000 * 109.47340 * 300.00564 * 6 5 3 33 33 H 1.08999 * 109.46930 * 60.00347 * 6 5 3 34 34 H 1.09007 * 109.47061 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47713 * 299.99968 * 7 6 5 36 36 H 1.08999 * 109.46951 * 60.00360 * 7 6 5 37 37 H 1.00892 * 111.00272 * 151.04684 * 8 3 2 38 38 H 1.09001 * 109.46879 * 300.00374 * 9 8 3 39 39 H 1.08998 * 109.47048 * 59.99827 * 9 8 3 40 40 H 0.96699 * 113.99798 * 60.00153 * 12 10 9 41 41 H 1.09007 * 109.46949 * 294.99806 * 13 10 9 42 42 H 1.09001 * 109.47037 * 54.99430 * 13 10 9 43 43 H 1.08009 * 119.90494 * 0.02562 * 16 15 14 44 44 H 1.08001 * 120.09843 * 180.25503 * 17 16 15 45 45 H 0.97001 * 119.99250 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.09772 * 179.97438 * 27 18 17 47 47 H 1.08002 * 119.90692 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.4417 0.9274 5 6 3.1553 1.4389 -0.1132 6 6 4.6802 1.4513 0.0120 7 6 5.1896 2.8895 -0.1018 8 7 3.1361 -0.7835 -1.1415 9 6 3.1995 -2.2131 -0.8097 10 6 3.7136 -2.9953 -2.0199 11 1 3.0881 -2.7774 -2.8857 12 8 5.0618 -2.6114 -2.2975 13 6 3.6620 -4.4943 -1.7178 14 8 4.0312 -5.2288 -2.8867 15 6 4.0372 -6.5819 -2.7876 16 6 3.6980 -7.1896 -1.5807 17 6 3.6968 -8.5497 -1.4740 18 6 4.0501 -9.3395 -2.5853 19 6 4.0572 -10.7479 -2.4818 20 1 3.9276 -11.3549 -3.3657 21 6 4.2322 -11.3567 -1.2346 22 7 4.7295 -10.6720 -0.2361 23 14 3.7561 -13.1469 -0.9941 24 1 4.9497 -14.0077 -1.1938 25 1 3.2317 -13.3392 0.3818 26 1 2.7085 -13.5172 -1.9794 27 6 4.3968 -8.7171 -3.8001 28 6 4.3874 -7.3559 -3.8916 29 1 -1.0499 0.0002 0.0006 30 1 2.8668 1.8517 -1.0799 31 1 2.7205 2.0421 0.6838 32 1 4.9688 1.0386 0.9787 33 1 5.1150 0.8482 -0.7849 34 1 6.2760 2.8983 -0.0130 35 1 4.9011 3.3018 -1.0687 36 1 4.7547 3.4931 0.6949 37 1 4.0335 -0.4448 -1.4543 38 1 3.8759 -2.3610 0.0322 39 1 2.2043 -2.5687 -0.5428 40 1 5.6757 -2.7769 -1.5690 41 1 4.3552 -4.7260 -0.9091 42 1 2.6505 -4.7702 -1.4196 43 1 3.4311 -6.5823 -0.7283 44 1 3.4296 -9.0194 -0.5389 45 1 4.8504 -11.0942 0.6288 46 1 4.6694 -9.3156 -4.6567 47 1 4.6534 -6.8769 -4.8224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346300486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:23 Heat of formation + Delta-G solvation = -29.461521 kcal Electronic energy + Delta-G solvation = -25161.914292 eV Core-core repulsion = 21503.717025 eV Total energy + Delta-G solvation = -3658.197268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.22853 -38.42933 -37.15482 -36.00865 -34.06386 -33.34061 -32.83596 -30.64712 -29.64234 -29.24830 -28.30841 -25.32552 -24.52175 -23.91239 -21.99974 -21.35382 -20.89125 -20.35970 -18.23768 -17.37706 -17.20431 -16.61676 -16.51159 -16.11022 -15.59535 -15.19652 -15.01625 -14.55764 -14.18393 -14.14457 -13.93454 -13.65339 -13.39080 -12.86171 -12.75923 -12.49057 -12.34804 -12.18059 -12.01252 -11.93487 -11.76660 -11.44881 -11.43496 -11.12576 -11.07144 -11.00873 -10.81329 -10.66384 -10.59232 -10.33369 -10.01075 -9.92662 -9.78545 -9.36815 -9.01327 -8.84158 -7.65860 -7.01120 -6.73575 -4.25427 2.55438 2.64484 2.76341 2.96216 3.07460 3.11828 3.21184 3.62203 3.94645 4.01998 4.30483 4.40421 4.51160 4.56370 4.61311 4.67199 4.90172 4.93681 5.03831 5.12487 5.18667 5.27763 5.35525 5.36515 5.49388 5.50640 5.64748 5.67983 5.71800 5.77303 5.82034 5.89836 6.06834 6.09946 6.28647 6.60482 6.72014 6.89074 7.06442 7.06798 7.27625 7.40482 7.46170 7.55655 7.60878 7.90176 7.99957 8.15227 8.44405 8.64813 8.89848 8.99012 10.21354 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.002052 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.206747 B =13640.252726 C =14012.861715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.195 3.805 4 H 0.066 0.934 5 C -0.117 4.117 6 C -0.130 4.130 7 C -0.151 4.151 8 N -0.677 5.677 9 C 0.031 3.969 10 C 0.113 3.887 11 H 0.115 0.885 12 O -0.551 6.551 13 C 0.040 3.960 14 O -0.318 6.318 15 C -0.009 4.009 16 C -0.175 4.175 17 C -0.134 4.134 18 C 0.087 3.913 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.801 5.801 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.195 4.195 28 C -0.112 4.112 29 H 0.216 0.784 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.356 0.644 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.370 0.630 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.279 0.721 46 H 0.100 0.900 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 20.907 4.961 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.173 4.173 3 C 0.086 3.914 4 H 0.084 0.916 5 C -0.155 4.155 6 C -0.168 4.168 7 C -0.208 4.208 8 N -0.312 5.312 9 C -0.098 4.098 10 C 0.053 3.947 11 H 0.133 0.867 12 O -0.355 6.355 13 C -0.037 4.037 14 O -0.234 6.234 15 C -0.053 4.053 16 C -0.194 4.194 17 C -0.154 4.154 18 C 0.084 3.916 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.427 5.427 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.215 4.215 28 C -0.131 4.131 29 H 0.233 0.767 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.179 0.821 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.216 0.784 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.097 21.115 4.163 21.743 hybrid contribution 0.466 -1.211 1.723 2.157 sum -2.631 19.904 5.885 20.922 Atomic orbital electron populations 1.24897 0.95873 1.00398 1.00638 1.22873 0.94004 1.00426 1.00045 1.18411 0.85201 0.94579 0.93238 0.91647 1.21768 0.95595 0.94505 1.03656 1.21617 0.94953 0.98051 1.02177 1.21736 1.01027 0.96084 1.01975 1.60229 1.34723 1.01962 1.34303 1.22613 1.02017 0.88658 0.96556 1.21949 0.84065 0.90241 0.98418 0.86709 1.86639 1.18145 1.86191 1.44565 1.23077 1.00104 0.91511 0.89053 1.85864 1.86052 1.16843 1.34598 1.18598 1.10877 0.80363 0.95426 1.20591 1.07243 0.96299 0.95221 1.20925 1.02791 0.91393 1.00257 1.17602 0.89503 0.93595 0.90859 1.19462 1.44265 0.91661 0.93885 0.90487 1.25878 0.92382 1.00391 0.95554 1.69848 1.31636 1.38428 1.02816 0.86336 0.79808 0.82279 0.78493 1.19642 1.20150 1.18474 1.20606 1.09257 0.92578 0.99052 1.19625 1.04521 0.93234 0.95726 0.76717 0.90397 0.90802 0.91851 0.91454 0.92505 0.92470 0.92732 0.82090 0.94336 0.89735 0.78359 0.92938 0.92316 0.88950 0.86191 0.91053 0.88178 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 19.25 29.55 0.57 -1.35 16 2 C -0.17 -1.81 12.62 -37.12 -0.47 -2.28 16 3 C 0.19 1.72 2.50 -70.50 -0.18 1.55 16 4 H 0.07 0.54 7.80 -51.93 -0.40 0.14 16 5 C -0.12 -0.83 4.76 -26.73 -0.13 -0.96 16 6 C -0.13 -0.79 5.76 -26.73 -0.15 -0.94 16 7 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 8 N -0.68 -6.64 6.28 -109.71 -0.69 -7.32 16 9 C 0.03 0.32 5.15 -3.83 -0.02 0.30 16 10 C 0.11 1.44 3.49 -26.73 -0.09 1.35 16 11 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 12 O -0.55 -7.10 12.82 -40.08 -0.51 -7.61 16 13 C 0.04 0.63 4.36 37.16 0.16 0.79 16 14 O -0.32 -6.58 10.09 -23.60 -0.24 -6.82 16 15 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 16 C -0.17 -4.12 8.96 -39.83 -0.36 -4.47 16 17 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 18 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 19 C -0.46 -12.33 9.04 -37.83 -0.34 -12.68 16 20 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 21 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 22 N -0.80 -20.76 10.97 55.54 0.61 -20.15 16 23 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 27 C -0.20 -4.87 9.74 -39.25 -0.38 -5.26 16 28 C -0.11 -2.67 9.92 -39.83 -0.40 -3.06 16 29 H 0.22 1.36 7.80 -54.09 -0.42 0.94 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.36 3.23 6.03 -39.30 -0.24 2.99 16 38 H 0.04 0.35 8.06 -51.93 -0.42 -0.07 16 39 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 40 H 0.37 3.52 9.05 45.56 0.41 3.93 16 41 H 0.05 0.79 7.63 -51.93 -0.40 0.40 16 42 H 0.06 0.90 7.66 -51.93 -0.40 0.50 16 43 H 0.09 1.92 6.27 -52.48 -0.33 1.59 16 44 H 0.12 3.20 6.18 -52.49 -0.32 2.88 16 45 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 46 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 47 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -30.29 392.79 -9.26 -39.55 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.62 Total: 11.03 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -2.70 Total: -28.28 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: -0.08 Total: -27.48 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.75 Total: -14.43 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.29 -9.26 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346300486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.090 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds