Wall clock time and date at job start Tue Mar 31 2020 12:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47499 * 295.50736 * 3 2 1 5 5 C 1.52999 * 109.47014 * 175.50065 * 3 2 1 6 6 C 1.53001 * 109.47089 * 174.99998 * 5 3 2 7 7 C 1.52999 * 109.47089 * 179.97438 * 6 5 3 8 8 N 1.46907 * 109.47106 * 55.50574 * 3 2 1 9 9 C 1.46901 * 110.99883 * 274.99845 * 8 3 2 10 10 C 1.52996 * 109.47170 * 180.02562 * 9 8 3 11 11 H 1.09005 * 109.46821 * 304.99627 * 10 9 8 12 12 O 1.42897 * 109.47135 * 64.99804 * 10 9 8 13 13 C 1.53002 * 109.47083 * 185.00193 * 10 9 8 14 14 O 1.42896 * 109.47056 * 175.00016 * 13 10 9 15 15 C 1.35682 * 116.99989 * 179.97438 * 14 13 10 16 16 C 1.39313 * 119.81650 * 359.72443 * 15 14 13 17 17 C 1.36430 * 120.18460 * 179.75962 * 16 15 14 18 18 C 1.40834 * 119.81253 * 0.51160 * 17 16 15 19 19 C 1.41218 * 120.18079 * 179.71840 * 18 17 16 20 20 H 1.08003 * 119.99797 * 155.17129 * 19 18 17 21 21 C 1.39886 * 120.00037 * 335.16664 * 19 18 17 22 22 N 1.30888 * 119.99957 * 342.15946 * 21 19 18 23 23 Si 1.86794 * 120.00113 * 162.15800 * 21 19 18 24 24 H 1.48502 * 109.47338 * 94.65474 * 23 21 19 25 25 H 1.48503 * 109.47560 * 214.66004 * 23 21 19 26 26 H 1.48509 * 109.47110 * 334.65897 * 23 21 19 27 27 C 1.40831 * 119.64134 * 359.74230 * 18 17 16 28 28 C 1.36439 * 119.80819 * 359.97438 * 27 18 17 29 29 H 4.18737 * 15.03812 * 359.97438 * 4 2 1 30 30 H 1.09000 * 109.47713 * 294.99965 * 5 3 2 31 31 H 1.08999 * 109.46951 * 55.00357 * 5 3 2 32 32 H 1.09000 * 109.47340 * 300.00564 * 6 5 3 33 33 H 1.08999 * 109.46930 * 60.00347 * 6 5 3 34 34 H 1.09007 * 109.47061 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47713 * 299.99968 * 7 6 5 36 36 H 1.08999 * 109.46951 * 60.00360 * 7 6 5 37 37 H 1.00892 * 111.00272 * 151.04684 * 8 3 2 38 38 H 1.09001 * 109.46879 * 300.00374 * 9 8 3 39 39 H 1.08998 * 109.47048 * 59.99827 * 9 8 3 40 40 H 0.96699 * 113.99798 * 60.00153 * 12 10 9 41 41 H 1.09007 * 109.46949 * 294.99806 * 13 10 9 42 42 H 1.09001 * 109.47037 * 54.99430 * 13 10 9 43 43 H 1.08009 * 119.90494 * 0.02562 * 16 15 14 44 44 H 1.08001 * 120.09843 * 180.25503 * 17 16 15 45 45 H 0.97001 * 119.99250 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.09772 * 179.97438 * 27 18 17 47 47 H 1.08002 * 119.90692 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.4417 0.9274 5 6 3.1553 1.4389 -0.1132 6 6 4.6802 1.4513 0.0120 7 6 5.1896 2.8895 -0.1018 8 7 3.1361 -0.7835 -1.1415 9 6 3.1995 -2.2131 -0.8097 10 6 3.7136 -2.9953 -2.0199 11 1 3.0881 -2.7774 -2.8857 12 8 5.0618 -2.6114 -2.2975 13 6 3.6620 -4.4943 -1.7178 14 8 4.0312 -5.2288 -2.8867 15 6 4.0372 -6.5819 -2.7876 16 6 3.6980 -7.1896 -1.5807 17 6 3.6968 -8.5497 -1.4740 18 6 4.0501 -9.3395 -2.5853 19 6 4.0572 -10.7479 -2.4818 20 1 3.9276 -11.3549 -3.3657 21 6 4.2322 -11.3567 -1.2346 22 7 4.7295 -10.6720 -0.2361 23 14 3.7561 -13.1469 -0.9941 24 1 4.9497 -14.0077 -1.1938 25 1 3.2317 -13.3392 0.3818 26 1 2.7085 -13.5172 -1.9794 27 6 4.3968 -8.7171 -3.8001 28 6 4.3874 -7.3559 -3.8916 29 1 -1.0499 0.0002 0.0006 30 1 2.8668 1.8517 -1.0799 31 1 2.7205 2.0421 0.6838 32 1 4.9688 1.0386 0.9787 33 1 5.1150 0.8482 -0.7849 34 1 6.2760 2.8983 -0.0130 35 1 4.9011 3.3018 -1.0687 36 1 4.7547 3.4931 0.6949 37 1 4.0335 -0.4448 -1.4543 38 1 3.8759 -2.3610 0.0322 39 1 2.2043 -2.5687 -0.5428 40 1 5.6757 -2.7769 -1.5690 41 1 4.3552 -4.7260 -0.9091 42 1 2.6505 -4.7702 -1.4196 43 1 3.4311 -6.5823 -0.7283 44 1 3.4296 -9.0194 -0.5389 45 1 4.8504 -11.0942 0.6288 46 1 4.6694 -9.3156 -4.6567 47 1 4.6534 -6.8769 -4.8224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346300486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:22 Heat of formation + Delta-G solvation = -48.020440 kcal Electronic energy + Delta-G solvation = -25162.719068 eV Core-core repulsion = 21503.717025 eV Total energy + Delta-G solvation = -3659.002043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69321 -39.51385 -38.37803 -37.44440 -35.21161 -34.68370 -33.59921 -31.81229 -31.50321 -30.80599 -29.28363 -26.86037 -25.74189 -24.71393 -23.32735 -22.58667 -22.10798 -21.79946 -19.27876 -18.91649 -18.71633 -17.86286 -17.55412 -17.03569 -16.86930 -16.42483 -16.02600 -15.77733 -15.52072 -15.30680 -15.13884 -14.85978 -14.35518 -14.24863 -14.13888 -13.79289 -13.60724 -13.41530 -13.23407 -13.06077 -12.79671 -12.75649 -12.71859 -12.49485 -12.31236 -12.03296 -11.88426 -11.69560 -11.59773 -11.56065 -11.41020 -11.23457 -11.08623 -10.93576 -10.85666 -9.58061 -9.57828 -8.91730 -8.61073 -6.23150 0.92774 1.03374 1.39378 1.49009 1.55306 1.79666 1.91244 2.22481 2.41618 2.71604 3.25901 3.42380 3.47804 3.69391 3.89958 3.96725 3.97362 3.99443 4.05241 4.18121 4.27269 4.28740 4.37190 4.41978 4.46348 4.60147 4.67942 4.78791 4.86333 4.88456 4.97469 5.00264 5.05039 5.14494 5.18124 5.26094 5.29851 5.36081 5.43045 5.51129 5.65307 5.87635 5.96070 6.05463 6.22762 6.36033 6.55129 6.73962 6.75076 6.79860 6.94489 7.09184 8.36043 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.002052 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.206747 B =13640.252726 C =14012.861715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.194 3.806 4 H 0.073 0.927 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.151 4.151 8 N -0.685 5.685 9 C 0.042 3.958 10 C 0.127 3.873 11 H 0.099 0.901 12 O -0.563 6.563 13 C 0.032 3.968 14 O -0.328 6.328 15 C -0.001 4.001 16 C -0.175 4.175 17 C -0.155 4.155 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.076 0.924 21 C 0.033 3.967 22 N -0.831 5.831 23 Si 0.981 3.019 24 H -0.263 1.263 25 H -0.266 1.266 26 H -0.260 1.260 27 C -0.204 4.204 28 C -0.123 4.123 29 H 0.240 0.760 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.360 0.640 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.385 0.615 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.287 0.713 46 H 0.110 0.890 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 21.679 5.775 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.206 4.206 3 C 0.085 3.915 4 H 0.091 0.909 5 C -0.148 4.148 6 C -0.164 4.164 7 C -0.208 4.208 8 N -0.321 5.321 9 C -0.088 4.088 10 C 0.067 3.933 11 H 0.117 0.883 12 O -0.370 6.370 13 C -0.045 4.045 14 O -0.244 6.244 15 C -0.045 4.045 16 C -0.194 4.194 17 C -0.174 4.174 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.094 0.906 21 C -0.180 4.180 22 N -0.458 5.458 23 Si 0.802 3.198 24 H -0.188 1.188 25 H -0.191 1.191 26 H -0.184 1.184 27 C -0.224 4.224 28 C -0.142 4.142 29 H 0.256 0.744 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.184 0.816 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.234 0.766 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.125 0.875 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.196 21.919 4.981 22.704 hybrid contribution 0.500 -1.266 1.453 1.991 sum -2.696 20.653 6.434 21.799 Atomic orbital electron populations 1.25660 0.96849 0.99664 0.99807 1.23460 0.95024 1.01214 1.00875 1.18500 0.84598 0.95325 0.93040 0.90947 1.21705 0.96265 0.93462 1.03328 1.21590 0.94099 0.98382 1.02375 1.21738 1.01277 0.95792 1.02027 1.60169 1.35115 1.01710 1.35103 1.22449 1.01935 0.88690 0.95708 1.21749 0.84167 0.88439 0.98908 0.88281 1.86608 1.18423 1.86075 1.45855 1.23439 1.00529 0.92675 0.87833 1.85861 1.85931 1.15418 1.37183 1.18715 1.09078 0.81746 0.94961 1.20800 1.06565 0.95664 0.96379 1.20908 1.04250 0.92490 0.99763 1.17971 0.90633 0.94353 0.91926 1.19709 1.46265 0.92009 0.94883 0.90632 1.26726 0.91599 1.04972 0.94738 1.69892 1.31987 1.40481 1.03444 0.85208 0.79510 0.76405 0.78662 1.18817 1.19077 1.18356 1.20800 1.09240 0.93437 0.98926 1.19905 1.04318 0.93024 0.96914 0.74371 0.91288 0.90279 0.91307 0.91667 0.92148 0.92702 0.92319 0.81627 0.92510 0.90286 0.76562 0.91921 0.91792 0.86384 0.87512 0.90247 0.87236 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.60 19.25 74.32 1.43 -2.17 16 2 C -0.20 -4.07 12.62 31.13 0.39 -3.68 16 3 C 0.19 3.16 2.50 43.11 0.11 3.27 16 4 H 0.07 1.07 7.80 -2.39 -0.02 1.05 16 5 C -0.11 -1.41 4.76 30.59 0.15 -1.26 16 6 C -0.13 -1.33 5.76 30.59 0.18 -1.16 16 7 C -0.15 -1.46 9.91 71.98 0.71 -0.74 16 8 N -0.68 -12.42 6.28 -501.00 -3.14 -15.56 16 9 C 0.04 0.78 5.15 86.30 0.44 1.23 16 10 C 0.13 3.05 3.49 30.59 0.11 3.16 16 11 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 12 O -0.56 -13.46 12.82 -144.34 -1.85 -15.32 16 13 C 0.03 0.94 4.36 71.98 0.31 1.26 16 14 O -0.33 -13.16 10.09 -85.37 -0.86 -14.02 16 15 C 0.00 -0.05 6.71 22.79 0.15 0.10 16 16 C -0.18 -8.20 8.96 22.11 0.20 -8.01 16 17 C -0.15 -8.20 8.64 22.48 0.19 -8.01 16 18 C 0.05 2.93 5.57 -21.28 -0.12 2.81 16 19 C -0.50 -27.20 9.04 23.40 0.21 -26.99 16 20 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 21 C 0.03 1.70 5.13 85.23 0.44 2.13 16 22 N -0.83 -43.60 10.97 21.82 0.24 -43.36 16 23 Si 0.98 38.39 29.59 68.60 2.03 40.42 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 25 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 26 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 27 C -0.20 -10.33 9.74 22.48 0.22 -10.11 16 28 C -0.12 -5.79 9.92 22.11 0.22 -5.57 16 29 H 0.24 2.59 7.80 -4.42 -0.03 2.55 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.72 6.43 -2.39 -0.02 0.70 16 34 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 37 H 0.36 5.96 6.03 -89.70 -0.54 5.42 16 38 H 0.06 0.87 8.06 -2.39 -0.02 0.85 16 39 H 0.08 1.59 7.98 -2.39 -0.02 1.57 16 40 H 0.39 6.45 9.05 -74.06 -0.67 5.78 16 41 H 0.06 1.76 7.63 -2.38 -0.02 1.74 16 42 H 0.06 1.85 7.66 -2.39 -0.02 1.83 16 43 H 0.12 4.77 6.27 -2.91 -0.02 4.75 16 44 H 0.11 5.86 6.18 -2.91 -0.02 5.84 16 45 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 46 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 47 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -65.11 392.79 1.51 -63.59 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -0.24 Total: 37.99 kcal Atomic # 6 Polarization: -59.08 SS G_CDS: 5.35 Total: -53.74 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -2.91 Total: -58.92 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -2.71 Total: -29.33 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -65.11 1.51 -63.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346300486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.570 kcal (2) G-P(sol) polarization free energy of solvation -65.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds