Wall clock time and date at job start Tue Mar 31 2020 12:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08992 * 109.47582 * 228.01578 * 3 2 1 5 5 C 1.53001 * 109.47136 * 348.01981 * 3 2 1 6 6 C 1.53003 * 109.47093 * 184.99712 * 5 3 2 7 7 C 1.53001 * 109.47093 * 180.02562 * 6 5 3 8 8 N 1.46909 * 109.46847 * 108.01839 * 3 2 1 9 9 C 1.46893 * 111.00129 * 84.99888 * 8 3 2 10 10 C 1.52999 * 109.47461 * 179.97438 * 9 8 3 11 11 H 1.09006 * 109.46824 * 305.00188 * 10 9 8 12 12 O 1.42900 * 109.46944 * 64.99909 * 10 9 8 13 13 C 1.53001 * 109.47100 * 185.00447 * 10 9 8 14 14 O 1.42904 * 109.46668 * 175.00130 * 13 10 9 15 15 C 1.35671 * 116.99810 * 179.97438 * 14 13 10 16 16 C 1.39314 * 119.81823 * 359.71940 * 15 14 13 17 17 C 1.36442 * 120.18453 * 179.75941 * 16 15 14 18 18 C 1.40832 * 119.81185 * 0.52093 * 17 16 15 19 19 C 1.41211 * 120.17692 * 179.72033 * 18 17 16 20 20 H 1.07999 * 120.00391 * 24.56450 * 19 18 17 21 21 C 1.39891 * 119.99833 * 204.56713 * 19 18 17 22 22 N 1.30888 * 119.99947 * 17.93043 * 21 19 18 23 23 Si 1.86794 * 120.00484 * 197.93047 * 21 19 18 24 24 H 1.48500 * 109.46957 * 59.99693 * 23 21 19 25 25 H 1.48492 * 109.47511 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47205 * 300.00170 * 23 21 19 27 27 C 1.40829 * 119.63934 * 359.73479 * 18 17 16 28 28 C 1.36442 * 119.81699 * 0.02562 * 27 18 17 29 29 H 4.18741 * 15.03741 * 359.97438 * 4 2 1 30 30 H 1.08997 * 109.47226 * 304.99706 * 5 3 2 31 31 H 1.09003 * 109.46896 * 64.99927 * 5 3 2 32 32 H 1.08997 * 109.47080 * 300.00084 * 6 5 3 33 33 H 1.09004 * 109.47042 * 59.99539 * 6 5 3 34 34 H 1.08992 * 109.47352 * 60.00167 * 7 6 5 35 35 H 1.09001 * 109.46835 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.46716 * 299.99871 * 7 6 5 37 37 H 1.00899 * 111.00123 * 321.04376 * 8 3 2 38 38 H 1.09007 * 109.47102 * 59.99944 * 9 8 3 39 39 H 1.08997 * 109.47367 * 300.00190 * 9 8 3 40 40 H 0.96696 * 113.99583 * 60.00495 * 12 10 9 41 41 H 1.09002 * 109.46867 * 294.99478 * 13 10 9 42 42 H 1.08994 * 109.47634 * 54.99884 * 13 10 9 43 43 H 1.08002 * 119.90465 * 0.02562 * 16 15 14 44 44 H 1.08000 * 120.09300 * 180.25124 * 17 16 15 45 45 H 0.96999 * 120.00262 * 179.97438 * 22 21 19 46 46 H 1.08003 * 120.09188 * 179.97438 * 27 18 17 47 47 H 1.07994 * 119.90749 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0091 0.6882 0.7638 5 6 3.1566 -1.4102 0.2994 6 6 4.6815 -1.3852 0.4227 7 6 5.1922 -2.7962 0.7215 8 7 3.1354 0.4293 -1.3172 9 6 3.1975 1.8943 -1.4045 10 6 3.7110 2.3016 -2.7870 11 1 4.6671 1.8139 -2.9776 12 8 2.7663 1.9033 -3.7824 13 6 3.8943 3.8198 -2.8361 14 8 4.4829 4.1883 -4.0850 15 6 4.7136 5.5093 -4.2912 16 6 4.3720 6.4341 -3.3069 17 6 4.6052 7.7638 -3.5044 18 6 5.1829 8.2016 -4.7119 19 6 5.4222 9.5766 -4.9268 20 1 5.5481 10.2409 -4.0847 21 6 5.4961 10.0783 -6.2306 22 7 5.0088 9.3841 -7.2275 23 14 6.2901 11.7388 -6.5489 24 1 7.7041 11.7062 -6.0964 25 1 6.2429 12.0397 -8.0023 26 1 5.5552 12.7904 -5.8010 27 6 5.5203 7.2607 -5.7039 28 6 5.2850 5.9340 -5.4887 29 1 -1.0500 -0.0001 -0.0008 30 1 2.7222 -1.7629 1.2348 31 1 2.8685 -2.0804 -0.5105 32 1 5.1159 -1.0325 -0.5126 33 1 4.9696 -0.7149 1.2326 34 1 4.9041 -3.4660 -0.0886 35 1 6.2784 -2.7783 0.8098 36 1 4.7578 -3.1493 1.6567 37 1 2.5655 0.0468 -2.0567 38 1 3.8738 2.2756 -0.6393 39 1 2.2020 2.3101 -1.2493 40 1 1.8910 2.2999 -3.6749 41 1 2.9242 4.3063 -2.7340 42 1 4.5458 4.1338 -2.0206 43 1 3.9253 6.0970 -2.3832 44 1 4.3435 8.4791 -2.7387 45 1 5.0597 9.7320 -8.1315 46 1 5.9633 7.5883 -6.6328 47 1 5.5428 5.2112 -6.2486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346300489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:27 Heat of formation + Delta-G solvation = -31.866768 kcal Electronic energy + Delta-G solvation = -25066.398725 eV Core-core repulsion = 21408.097158 eV Total energy + Delta-G solvation = -3658.301567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.21888 -38.36719 -37.10899 -36.01281 -34.11058 -33.31721 -32.84451 -30.68603 -29.71017 -29.06746 -28.38538 -25.37685 -24.49962 -23.58761 -22.02956 -21.25944 -20.67414 -20.57154 -18.73769 -17.37060 -17.23122 -16.50612 -16.40070 -15.98789 -15.52245 -15.18742 -14.83105 -14.55731 -14.21599 -14.09234 -13.92808 -13.66907 -13.35184 -12.87226 -12.65973 -12.48039 -12.23192 -12.13130 -12.11052 -11.81937 -11.78177 -11.40257 -11.26689 -11.12732 -11.00517 -10.86006 -10.84343 -10.82424 -10.59722 -10.48494 -10.01466 -9.96259 -9.82711 -9.33313 -9.01680 -8.90988 -7.64308 -7.03104 -6.72165 -4.25470 2.39482 2.46097 2.79079 2.95090 3.08005 3.10329 3.22432 3.56647 3.91137 3.95108 4.22621 4.39369 4.61880 4.65813 4.77121 4.86368 4.95503 4.97744 5.02952 5.15156 5.30915 5.38576 5.40057 5.47198 5.53015 5.60919 5.61880 5.67447 5.69952 5.85568 6.00177 6.05460 6.05891 6.18996 6.23148 6.58075 6.73133 6.97676 7.01614 7.11183 7.18600 7.23690 7.46071 7.55434 7.61003 7.79142 8.00415 8.20573 8.45291 8.65301 8.89871 8.98819 10.22269 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.001932 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.589461 B =14491.790051 C =14745.243642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.220 4.220 3 C 0.193 3.807 4 H 0.097 0.903 5 C -0.100 4.100 6 C -0.119 4.119 7 C -0.153 4.153 8 N -0.665 5.665 9 C 0.028 3.972 10 C 0.112 3.888 11 H 0.116 0.884 12 O -0.551 6.551 13 C 0.040 3.960 14 O -0.317 6.317 15 C -0.009 4.009 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.464 4.464 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.798 5.798 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.267 1.267 27 C -0.134 4.134 28 C -0.119 4.119 29 H 0.216 0.784 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.354 0.646 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.370 0.630 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.281 0.719 46 H 0.126 0.874 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -17.672 12.907 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.222 4.222 3 C 0.083 3.917 4 H 0.115 0.885 5 C -0.138 4.138 6 C -0.156 4.156 7 C -0.210 4.210 8 N -0.295 5.295 9 C -0.101 4.101 10 C 0.053 3.947 11 H 0.134 0.866 12 O -0.355 6.355 13 C -0.038 4.038 14 O -0.233 6.233 15 C -0.052 4.052 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.086 3.914 19 C -0.494 4.494 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.425 5.425 23 Si 0.733 3.267 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.153 4.153 28 C -0.138 4.138 29 H 0.233 0.767 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.173 0.827 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.216 0.784 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.143 0.857 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.607 -18.214 12.453 22.357 hybrid contribution -1.589 1.597 0.252 2.267 sum -5.196 -16.617 12.705 21.553 Atomic orbital electron populations 1.25063 0.96069 1.00547 0.99483 1.24403 0.95686 1.00685 1.01439 1.18846 0.81536 0.98503 0.92821 0.88493 1.21543 0.96421 0.94242 1.01576 1.21448 0.94518 0.96833 1.02824 1.21780 1.00884 0.97169 1.01185 1.60713 1.56422 1.08854 1.03511 1.22632 1.00437 0.88564 0.98496 1.21957 0.94057 0.92503 0.86197 0.86629 1.86643 1.24057 1.72092 1.52707 1.23077 0.97968 0.94994 0.87748 1.85887 1.78726 1.23457 1.35183 1.18619 1.08948 0.80823 0.96841 1.20391 1.06178 0.94456 0.97676 1.20551 1.07491 0.93785 1.00044 1.17592 0.89456 0.93585 0.90804 1.19422 1.43870 0.93631 0.92469 0.90603 1.25883 0.93052 0.99391 0.95898 1.69828 1.33214 1.38384 1.01024 0.86376 0.80739 0.81849 0.77780 1.18883 1.20384 1.19122 1.20986 1.02880 0.90357 1.01071 1.19847 1.03273 0.96077 0.94562 0.76730 0.91667 0.91474 0.90200 0.92397 0.92821 0.92751 0.93204 0.82678 0.89529 0.94453 0.78363 0.93109 0.92320 0.88999 0.88792 0.90848 0.85650 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 19.25 29.55 0.57 -1.02 16 2 C -0.22 -2.01 12.34 -37.12 -0.46 -2.47 16 3 C 0.19 1.58 2.44 -70.49 -0.17 1.41 16 4 H 0.10 0.76 7.80 -51.93 -0.40 0.36 16 5 C -0.10 -0.73 4.85 -26.73 -0.13 -0.86 16 6 C -0.12 -0.86 5.82 -26.73 -0.16 -1.02 16 7 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 8 N -0.66 -6.01 5.69 -109.71 -0.62 -6.63 16 9 C 0.03 0.27 5.15 -3.83 -0.02 0.25 16 10 C 0.11 1.38 3.49 -26.73 -0.09 1.29 16 11 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 12 O -0.55 -7.24 12.82 -40.08 -0.51 -7.76 16 13 C 0.04 0.60 4.37 37.16 0.16 0.76 16 14 O -0.32 -6.52 10.09 -23.57 -0.24 -6.76 16 15 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 16 C -0.17 -3.81 8.96 -39.83 -0.36 -4.16 16 17 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 18 C 0.09 2.36 5.57 -106.81 -0.60 1.77 16 19 C -0.46 -12.35 9.04 -37.83 -0.34 -12.69 16 20 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 21 C 0.07 1.88 5.13 -17.34 -0.09 1.80 16 22 N -0.80 -20.78 10.96 55.55 0.61 -20.17 16 23 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 24 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 27 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 28 C -0.12 -2.92 9.92 -39.83 -0.40 -3.31 16 29 H 0.22 1.11 7.80 -54.09 -0.42 0.69 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.35 3.41 8.02 -39.29 -0.31 3.10 16 38 H 0.09 0.77 8.06 -51.92 -0.42 0.35 16 39 H 0.04 0.35 7.98 -51.93 -0.41 -0.06 16 40 H 0.37 3.74 9.04 45.56 0.41 4.16 16 41 H 0.05 0.74 7.63 -51.93 -0.40 0.35 16 42 H 0.06 0.84 7.66 -51.93 -0.40 0.45 16 43 H 0.09 1.78 6.27 -52.49 -0.33 1.46 16 44 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 46 H 0.13 3.37 6.16 -52.48 -0.32 3.05 16 47 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -29.61 395.30 -9.30 -38.91 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.77 Total: 11.27 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: -2.69 Total: -28.53 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: -0.02 Total: -26.80 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.75 Total: -14.52 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.61 -9.30 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346300489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.040 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds