Wall clock time and date at job start Tue Mar 31 2020 12:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.08992 * 109.47582 * 228.01578 * 3 2 1 5 5 C 1.53001 * 109.47136 * 348.01981 * 3 2 1 6 6 C 1.53003 * 109.47093 * 184.99712 * 5 3 2 7 7 C 1.53001 * 109.47093 * 180.02562 * 6 5 3 8 8 N 1.46909 * 109.46847 * 108.01839 * 3 2 1 9 9 C 1.46893 * 111.00129 * 84.99888 * 8 3 2 10 10 C 1.52999 * 109.47461 * 179.97438 * 9 8 3 11 11 H 1.09006 * 109.46824 * 305.00188 * 10 9 8 12 12 O 1.42900 * 109.46944 * 64.99909 * 10 9 8 13 13 C 1.53001 * 109.47100 * 185.00447 * 10 9 8 14 14 O 1.42904 * 109.46668 * 175.00130 * 13 10 9 15 15 C 1.35671 * 116.99810 * 179.97438 * 14 13 10 16 16 C 1.39314 * 119.81823 * 359.71940 * 15 14 13 17 17 C 1.36442 * 120.18453 * 179.75941 * 16 15 14 18 18 C 1.40832 * 119.81185 * 0.52093 * 17 16 15 19 19 C 1.41211 * 120.17692 * 179.72033 * 18 17 16 20 20 H 1.07999 * 120.00391 * 24.56450 * 19 18 17 21 21 C 1.39891 * 119.99833 * 204.56713 * 19 18 17 22 22 N 1.30888 * 119.99947 * 17.93043 * 21 19 18 23 23 Si 1.86794 * 120.00484 * 197.93047 * 21 19 18 24 24 H 1.48500 * 109.46957 * 59.99693 * 23 21 19 25 25 H 1.48492 * 109.47511 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47205 * 300.00170 * 23 21 19 27 27 C 1.40829 * 119.63934 * 359.73479 * 18 17 16 28 28 C 1.36442 * 119.81699 * 0.02562 * 27 18 17 29 29 H 4.18741 * 15.03741 * 359.97438 * 4 2 1 30 30 H 1.08997 * 109.47226 * 304.99706 * 5 3 2 31 31 H 1.09003 * 109.46896 * 64.99927 * 5 3 2 32 32 H 1.08997 * 109.47080 * 300.00084 * 6 5 3 33 33 H 1.09004 * 109.47042 * 59.99539 * 6 5 3 34 34 H 1.08992 * 109.47352 * 60.00167 * 7 6 5 35 35 H 1.09001 * 109.46835 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.46716 * 299.99871 * 7 6 5 37 37 H 1.00899 * 111.00123 * 321.04376 * 8 3 2 38 38 H 1.09007 * 109.47102 * 59.99944 * 9 8 3 39 39 H 1.08997 * 109.47367 * 300.00190 * 9 8 3 40 40 H 0.96696 * 113.99583 * 60.00495 * 12 10 9 41 41 H 1.09002 * 109.46867 * 294.99478 * 13 10 9 42 42 H 1.08994 * 109.47634 * 54.99884 * 13 10 9 43 43 H 1.08002 * 119.90465 * 0.02562 * 16 15 14 44 44 H 1.08000 * 120.09300 * 180.25124 * 17 16 15 45 45 H 0.96999 * 120.00262 * 179.97438 * 22 21 19 46 46 H 1.08003 * 120.09188 * 179.97438 * 27 18 17 47 47 H 1.07994 * 119.90749 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0091 0.6882 0.7638 5 6 3.1566 -1.4102 0.2994 6 6 4.6815 -1.3852 0.4227 7 6 5.1922 -2.7962 0.7215 8 7 3.1354 0.4293 -1.3172 9 6 3.1975 1.8943 -1.4045 10 6 3.7110 2.3016 -2.7870 11 1 4.6671 1.8139 -2.9776 12 8 2.7663 1.9033 -3.7824 13 6 3.8943 3.8198 -2.8361 14 8 4.4829 4.1883 -4.0850 15 6 4.7136 5.5093 -4.2912 16 6 4.3720 6.4341 -3.3069 17 6 4.6052 7.7638 -3.5044 18 6 5.1829 8.2016 -4.7119 19 6 5.4222 9.5766 -4.9268 20 1 5.5481 10.2409 -4.0847 21 6 5.4961 10.0783 -6.2306 22 7 5.0088 9.3841 -7.2275 23 14 6.2901 11.7388 -6.5489 24 1 7.7041 11.7062 -6.0964 25 1 6.2429 12.0397 -8.0023 26 1 5.5552 12.7904 -5.8010 27 6 5.5203 7.2607 -5.7039 28 6 5.2850 5.9340 -5.4887 29 1 -1.0500 -0.0001 -0.0008 30 1 2.7222 -1.7629 1.2348 31 1 2.8685 -2.0804 -0.5105 32 1 5.1159 -1.0325 -0.5126 33 1 4.9696 -0.7149 1.2326 34 1 4.9041 -3.4660 -0.0886 35 1 6.2784 -2.7783 0.8098 36 1 4.7578 -3.1493 1.6567 37 1 2.5655 0.0468 -2.0567 38 1 3.8738 2.2756 -0.6393 39 1 2.2020 2.3101 -1.2493 40 1 1.8910 2.2999 -3.6749 41 1 2.9242 4.3063 -2.7340 42 1 4.5458 4.1338 -2.0206 43 1 3.9253 6.0970 -2.3832 44 1 4.3435 8.4791 -2.7387 45 1 5.0597 9.7320 -8.1315 46 1 5.9633 7.5883 -6.6328 47 1 5.5428 5.2112 -6.2486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346300489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:26 Heat of formation + Delta-G solvation = -49.731406 kcal Electronic energy + Delta-G solvation = -25067.173393 eV Core-core repulsion = 21408.097158 eV Total energy + Delta-G solvation = -3659.076236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.68165 -39.44305 -38.31992 -37.42113 -35.18520 -34.75794 -33.54242 -31.99416 -31.24969 -30.81353 -29.29956 -26.86742 -25.81114 -24.33287 -23.23347 -22.46370 -22.27076 -21.77509 -19.36774 -19.25012 -18.73477 -17.70125 -17.46355 -17.05695 -16.65404 -16.38847 -15.97252 -15.73929 -15.43832 -15.29261 -15.10265 -14.80840 -14.40253 -14.17475 -14.06267 -13.91876 -13.57185 -13.37172 -13.10631 -13.04227 -12.78484 -12.68745 -12.63071 -12.42141 -12.38543 -11.93315 -11.86154 -11.72320 -11.59855 -11.48704 -11.42403 -11.26834 -11.12577 -10.91656 -10.86377 -9.60846 -9.56670 -8.92850 -8.59642 -6.22887 0.95174 1.02264 1.39735 1.50762 1.54875 1.74276 1.82807 2.22697 2.41394 2.72620 3.25115 3.36390 3.44829 3.69890 3.97228 3.99029 4.00050 4.07374 4.19803 4.28483 4.32370 4.34323 4.37000 4.45757 4.48440 4.66240 4.80197 4.86451 4.87963 4.98081 5.01953 5.05835 5.08690 5.14397 5.21460 5.28114 5.32662 5.44815 5.58246 5.60704 5.64105 5.88030 5.89852 6.05403 6.25970 6.27933 6.56162 6.62019 6.73454 6.81469 6.94792 7.09981 8.36809 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.001932 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.589461 B =14491.790051 C =14745.243642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.249 4.249 3 C 0.194 3.806 4 H 0.102 0.898 5 C -0.094 4.094 6 C -0.116 4.116 7 C -0.152 4.152 8 N -0.666 5.666 9 C 0.040 3.960 10 C 0.124 3.876 11 H 0.104 0.896 12 O -0.567 6.567 13 C 0.030 3.970 14 O -0.331 6.331 15 C 0.000 4.000 16 C -0.165 4.165 17 C -0.208 4.208 18 C 0.054 3.946 19 C -0.499 4.499 20 H 0.077 0.923 21 C 0.032 3.968 22 N -0.831 5.831 23 Si 0.983 3.017 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.153 4.153 28 C -0.135 4.135 29 H 0.240 0.760 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.350 0.650 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.383 0.617 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.287 0.713 46 H 0.110 0.890 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 -18.035 14.481 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.250 4.250 3 C 0.085 3.915 4 H 0.120 0.880 5 C -0.132 4.132 6 C -0.153 4.153 7 C -0.209 4.209 8 N -0.296 5.296 9 C -0.089 4.089 10 C 0.064 3.936 11 H 0.122 0.878 12 O -0.374 6.374 13 C -0.046 4.046 14 O -0.247 6.247 15 C -0.044 4.044 16 C -0.183 4.183 17 C -0.228 4.228 18 C 0.052 3.948 19 C -0.529 4.529 20 H 0.095 0.905 21 C -0.182 4.182 22 N -0.458 5.458 23 Si 0.804 3.196 24 H -0.186 1.186 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.173 4.173 28 C -0.153 4.153 29 H 0.256 0.744 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.169 0.831 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.231 0.769 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.147 0.853 44 H 0.124 0.876 45 H 0.098 0.902 46 H 0.127 0.873 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.292 -18.600 14.048 23.701 hybrid contribution -1.480 1.521 -0.162 2.128 sum -5.771 -17.079 13.886 22.756 Atomic orbital electron populations 1.25781 0.96949 0.99616 0.98470 1.24709 0.96314 1.01614 1.02394 1.18861 0.81430 0.98931 0.92275 0.88018 1.21495 0.96385 0.93721 1.01621 1.21405 0.94400 0.97295 1.02218 1.21772 1.01010 0.96698 1.01461 1.60708 1.56570 1.08438 1.03914 1.22487 1.00795 0.88973 0.96694 1.21840 0.93770 0.90337 0.87641 0.87831 1.86612 1.25023 1.72380 1.53348 1.23475 0.98307 0.96978 0.85831 1.85879 1.78993 1.21660 1.38143 1.18685 1.07232 0.82269 0.96170 1.20698 1.05290 0.93492 0.98856 1.20806 1.07167 0.95126 0.99652 1.17959 0.90671 0.94180 0.92009 1.19686 1.45814 0.93919 0.93462 0.90492 1.26759 0.92878 1.03359 0.95164 1.69890 1.33966 1.40349 1.01615 0.85245 0.79518 0.76859 0.78027 1.18556 1.19373 1.18328 1.20905 1.04231 0.91263 1.00861 1.20015 1.03800 0.95716 0.95816 0.74379 0.90996 0.92104 0.91573 0.92012 0.93017 0.92623 0.92499 0.83114 0.88465 0.93851 0.76867 0.92030 0.90960 0.85313 0.87557 0.90205 0.87253 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 19.25 74.32 1.43 -1.30 16 2 C -0.25 -4.10 12.34 31.13 0.38 -3.71 16 3 C 0.19 2.88 2.44 43.11 0.11 2.99 16 4 H 0.10 1.40 7.80 -2.39 -0.02 1.38 16 5 C -0.09 -1.26 4.85 30.60 0.15 -1.11 16 6 C -0.12 -1.54 5.82 30.60 0.18 -1.36 16 7 C -0.15 -1.82 9.91 71.98 0.71 -1.10 16 8 N -0.67 -11.04 5.69 -501.00 -2.85 -13.89 16 9 C 0.04 0.68 5.15 86.30 0.44 1.12 16 10 C 0.12 2.83 3.49 30.59 0.11 2.94 16 11 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 12 O -0.57 -14.09 12.82 -144.34 -1.85 -15.94 16 13 C 0.03 0.85 4.37 71.98 0.31 1.17 16 14 O -0.33 -13.18 10.09 -85.25 -0.86 -14.04 16 15 C 0.00 0.01 6.71 22.79 0.15 0.17 16 16 C -0.16 -7.20 8.96 22.11 0.20 -7.01 16 17 C -0.21 -10.20 9.74 22.49 0.22 -9.98 16 18 C 0.05 2.96 5.57 -21.28 -0.12 2.84 16 19 C -0.50 -27.15 9.04 23.40 0.21 -26.94 16 20 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 21 C 0.03 1.65 5.13 85.23 0.44 2.09 16 22 N -0.83 -44.32 10.96 21.82 0.24 -44.08 16 23 Si 0.98 38.58 29.60 68.60 2.03 40.61 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 26 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 27 C -0.15 -8.34 8.64 22.48 0.19 -8.14 16 28 C -0.13 -6.73 9.92 22.11 0.22 -6.51 16 29 H 0.24 1.84 7.80 -4.42 -0.03 1.81 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.07 7.75 -2.39 -0.02 1.05 16 33 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.35 6.32 8.02 -89.69 -0.72 5.60 16 38 H 0.10 1.46 8.06 -2.38 -0.02 1.44 16 39 H 0.04 0.70 7.98 -2.39 -0.02 0.68 16 40 H 0.38 7.08 9.04 -74.06 -0.67 6.41 16 41 H 0.06 1.62 7.63 -2.39 -0.02 1.60 16 42 H 0.07 1.86 7.66 -2.39 -0.02 1.84 16 43 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16 44 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 45 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 46 H 0.11 6.18 6.16 -2.91 -0.02 6.16 16 47 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -64.27 395.30 1.62 -62.65 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -0.43 Total: 38.54 kcal Atomic # 6 Polarization: -59.19 SS G_CDS: 5.34 Total: -53.85 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -2.61 Total: -57.97 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -2.71 Total: -29.98 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -64.27 1.62 -62.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346300489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.920 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds