Wall clock time and date at job start Tue Mar 31 2020 12:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46733 * 2 1 4 4 C 1.52994 * 109.47063 * 119.99760 * 2 1 3 5 5 H 1.08999 * 109.51644 * 300.10502 * 4 2 1 6 6 C 1.53299 * 109.51267 * 179.97438 * 4 2 1 7 7 N 1.47145 * 108.38819 * 187.77688 * 6 4 2 8 8 C 1.34772 * 120.98658 * 230.51484 * 7 6 4 9 9 O 1.21282 * 119.99877 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00266 * 179.97438 * 8 7 6 11 11 H 1.08993 * 109.46975 * 60.00245 * 10 8 7 12 12 C 1.50699 * 109.47038 * 300.00119 * 10 8 7 13 13 H 1.08003 * 120.00239 * 325.63417 * 12 10 8 14 14 C 1.37875 * 120.00049 * 145.64110 * 12 10 8 15 15 N 1.31511 * 120.00372 * 184.98005 * 14 12 10 16 16 Si 1.86801 * 119.99886 * 4.97869 * 14 12 10 17 17 H 1.48494 * 109.47413 * 84.53663 * 16 14 12 18 18 H 1.48501 * 109.47213 * 204.54163 * 16 14 12 19 19 H 1.48501 * 109.47055 * 324.54078 * 16 14 12 20 20 C 1.50703 * 109.46924 * 180.02562 * 10 8 7 21 21 C 1.38235 * 120.00032 * 65.13787 * 20 10 8 22 22 C 1.38240 * 119.99711 * 179.76239 * 21 20 10 23 23 C 1.38240 * 119.99697 * 0.51553 * 22 21 20 24 24 C 1.38235 * 120.00220 * 359.73696 * 23 22 21 25 25 C 1.38227 * 119.99858 * 0.02562 * 24 23 22 26 26 C 1.47158 * 118.03248 * 50.53417 * 7 6 4 27 27 C 1.53295 * 108.38728 * 309.46673 * 26 7 6 28 28 O 1.42958 * 109.22200 * 52.30137 * 27 26 7 29 29 H 1.09007 * 109.47154 * 300.00187 * 1 2 3 30 30 H 1.09000 * 109.46992 * 59.99849 * 1 2 3 31 31 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46800 * 240.00558 * 2 1 3 33 33 H 1.08998 * 109.46923 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47505 * 299.99837 * 3 2 1 35 35 H 1.08995 * 109.47440 * 60.00411 * 3 2 1 36 36 H 1.09001 * 109.68279 * 307.50171 * 6 4 2 37 37 H 1.08997 * 109.67684 * 68.05341 * 6 4 2 38 38 H 0.96994 * 120.00012 * 179.97438 * 15 14 12 39 39 H 1.07993 * 119.99947 * 359.97438 * 21 20 10 40 40 H 1.08000 * 119.99824 * 180.23095 * 22 21 20 41 41 H 1.08006 * 119.99476 * 179.72569 * 23 22 21 42 42 H 1.08004 * 119.99791 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99805 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.68171 * 189.74152 * 26 7 6 45 45 H 1.09000 * 109.68136 * 69.19200 * 26 7 6 46 46 H 1.09000 * 109.51257 * 292.37968 * 27 26 7 47 47 H 1.08999 * 109.55353 * 172.25035 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6756 -0.2090 2.1397 6 6 3.5730 -0.7223 1.2499 7 7 4.0361 -1.5778 2.3539 8 6 4.9521 -1.1349 3.2377 9 8 5.4077 -0.0161 3.1295 10 6 5.4102 -2.0297 4.3604 11 1 5.8594 -2.9320 3.9456 12 6 4.2290 -2.4049 5.2176 13 1 3.4280 -1.6973 5.3730 14 6 4.1708 -3.6515 5.8037 15 7 3.0971 -4.0154 6.4703 16 14 5.6171 -4.8239 5.6508 17 1 6.6148 -4.5197 6.7077 18 1 5.1402 -6.2214 5.8077 19 1 6.2461 -4.6625 4.3153 20 6 6.4282 -1.3013 5.1997 21 6 6.0572 -0.1796 5.9174 22 6 6.9899 0.4856 6.6911 23 6 8.2960 0.0352 6.7387 24 6 8.6681 -1.0834 6.0169 25 6 7.7344 -1.7514 5.2472 26 6 3.4698 -2.9315 2.4642 27 6 1.9418 -2.8228 2.4044 28 8 1.5684 -2.0708 1.2474 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.9403 -1.1155 0.3019 37 1 3.9407 0.2937 1.3936 38 1 3.0561 -4.8925 6.8822 39 1 5.0380 0.1750 5.8762 40 1 6.6991 1.3598 7.2547 41 1 9.0256 0.5576 7.3398 42 1 9.6887 -1.4350 6.0539 43 1 8.0253 -2.6252 4.6829 44 1 3.7692 -3.3786 3.4122 45 1 3.8266 -3.5472 1.6385 46 1 1.5774 -2.3188 3.2995 47 1 1.5071 -3.8207 2.3460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362369289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:55 Heat of formation + Delta-G solvation = -61.286800 kcal Electronic energy + Delta-G solvation = -28021.489752 eV Core-core repulsion = 24361.912437 eV Total energy + Delta-G solvation = -3659.577315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00575 -38.73265 -37.55561 -35.37422 -34.16703 -33.65878 -31.59331 -30.16413 -30.02803 -28.20712 -27.37805 -26.51413 -23.98897 -23.48352 -22.07565 -21.80895 -20.58826 -20.04755 -18.40062 -17.23338 -16.60894 -16.25199 -16.08222 -15.42527 -15.12645 -14.60801 -14.54034 -14.39841 -14.04029 -13.85671 -13.77252 -13.25162 -13.02299 -12.80471 -12.72739 -12.62918 -12.41090 -12.19263 -12.09171 -11.92925 -11.56732 -11.27113 -11.19752 -11.10985 -10.87682 -10.83404 -10.57349 -10.50491 -10.27212 -10.08721 -9.98055 -9.66440 -9.59328 -9.06157 -8.67884 -8.16204 -7.93691 -7.83562 -6.40785 -4.41894 2.12758 2.19189 3.07980 3.16492 3.21983 3.46948 3.63534 3.98207 4.12349 4.58550 4.81632 4.90122 4.96669 5.15774 5.30465 5.35549 5.50882 5.55051 5.58381 5.61519 5.63273 5.67348 5.73721 5.77477 5.86494 5.90847 5.91326 5.98521 6.01254 6.11406 6.18557 6.24996 6.26483 6.29199 6.37307 6.41548 6.44921 6.54511 6.70237 6.82457 7.10361 7.15592 7.18952 7.23233 7.52646 7.55265 7.76746 8.04022 8.16133 8.58783 9.00918 9.14690 10.69111 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.005082 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.922299 B = 5508.345714 C = 6855.146180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.149 4.149 4 C 0.085 3.915 5 H 0.061 0.939 6 C 0.083 3.917 7 N -0.610 5.610 8 C 0.539 3.461 9 O -0.561 6.561 10 C 0.018 3.982 11 H 0.073 0.927 12 C -0.506 4.506 13 H 0.083 0.917 14 C 0.085 3.915 15 N -0.877 5.877 16 Si 0.858 3.142 17 H -0.264 1.264 18 H -0.283 1.283 19 H -0.261 1.261 20 C -0.028 4.028 21 C -0.072 4.072 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.128 4.128 25 C -0.137 4.137 26 C 0.062 3.938 27 C 0.055 3.945 28 O -0.385 6.385 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.271 0.729 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.139 0.861 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 3.778 -8.542 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 C -0.207 4.207 4 C 0.026 3.974 5 H 0.079 0.921 6 C -0.041 4.041 7 N -0.343 5.343 8 C 0.330 3.670 9 O -0.440 6.440 10 C -0.003 4.003 11 H 0.090 0.910 12 C -0.544 4.544 13 H 0.101 0.899 14 C -0.120 4.120 15 N -0.512 5.512 16 Si 0.685 3.315 17 H -0.189 1.189 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.029 4.029 21 C -0.090 4.090 22 C -0.147 4.147 23 C -0.161 4.161 24 C -0.146 4.146 25 C -0.155 4.155 26 C -0.060 4.060 27 C -0.022 4.022 28 O -0.304 6.304 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.156 0.844 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.017 4.127 -8.612 9.550 hybrid contribution 0.855 -0.766 0.355 1.202 sum 0.872 3.362 -8.257 8.958 Atomic orbital electron populations 1.21745 0.94565 1.02404 1.01166 1.21057 0.96583 0.95582 0.97212 1.21875 1.01554 0.95196 1.02039 1.22448 0.92807 0.83884 0.98226 0.92130 1.22210 0.94335 0.97330 0.90191 1.47950 1.42563 1.15419 1.28393 1.21146 0.76952 0.87519 0.81427 1.90580 1.57363 1.21365 1.74667 1.18608 0.95477 0.94593 0.91640 0.90970 1.20482 1.03090 1.00672 1.30120 0.89867 1.24949 0.95283 0.97510 0.94253 1.69844 1.26846 1.21066 1.33412 0.87133 0.83867 0.80570 0.79941 1.18932 1.20833 1.18579 1.20042 0.92812 0.93956 0.96058 1.20827 0.98994 0.94435 0.94772 1.21034 0.93678 1.00019 0.99963 1.20868 0.96203 0.97784 1.01225 1.20881 0.98610 0.96592 0.98547 1.20970 0.93334 1.00437 1.00752 1.22827 0.93916 0.83554 1.05717 1.22897 0.94572 0.96498 0.88218 1.87841 1.76168 1.23121 1.43233 0.92903 0.93010 0.91781 0.90533 0.92084 0.92251 0.92380 0.91881 0.88634 0.91907 0.86580 0.87111 0.87298 0.87242 0.87445 0.84353 0.92752 0.91776 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.05 37.16 0.34 -1.24 16 2 C -0.09 -1.03 2.72 -90.62 -0.25 -1.28 16 3 C -0.15 -1.61 8.85 37.16 0.33 -1.28 16 4 C 0.09 1.29 2.36 -26.58 -0.06 1.23 16 5 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 6 C 0.08 1.37 5.32 -3.54 -0.02 1.35 16 7 N -0.61 -11.80 3.02 -172.28 -0.52 -12.32 16 8 C 0.54 11.86 6.99 -10.99 -0.08 11.79 16 9 O -0.56 -13.34 14.85 5.56 0.08 -13.26 16 10 C 0.02 0.41 1.12 -94.07 -0.11 0.30 16 11 H 0.07 1.60 4.79 -51.93 -0.25 1.35 16 12 C -0.51 -12.33 5.98 -34.44 -0.21 -12.54 16 13 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 14 C 0.09 2.13 4.78 -17.82 -0.09 2.04 16 15 N -0.88 -23.23 13.96 55.43 0.77 -22.46 16 16 Si 0.86 19.06 27.00 -169.99 -4.59 14.47 16 17 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.26 -5.42 6.07 56.52 0.34 -5.07 16 20 C -0.03 -0.61 4.05 -104.62 -0.42 -1.04 16 21 C -0.07 -1.56 8.26 -39.58 -0.33 -1.89 16 22 C -0.13 -2.42 10.05 -39.58 -0.40 -2.81 16 23 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 24 C -0.13 -2.31 10.05 -39.59 -0.40 -2.70 16 25 C -0.14 -2.77 9.40 -39.59 -0.37 -3.15 16 26 C 0.06 1.14 6.15 -3.53 -0.02 1.11 16 27 C 0.06 0.93 6.98 37.31 0.26 1.19 16 28 O -0.38 -6.25 9.72 -35.23 -0.34 -6.59 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.68 6.63 -51.93 -0.34 0.33 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.64 5.85 -51.93 -0.30 1.34 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.12 2.60 7.92 -52.49 -0.42 2.18 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 2.03 7.95 -52.48 -0.42 1.61 16 44 H 0.14 2.84 3.97 -51.93 -0.21 2.63 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -27.95 367.74 -8.72 -36.67 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.45 Total: 9.74 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -2.21 Total: -11.79 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.25 Total: -34.78 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.26 Total: -19.85 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.59 Total: 14.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.95 -8.72 -36.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362369289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.621 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds