Wall clock time and date at job start Tue Mar 31 2020 12:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46733 * 2 1 4 4 C 1.52994 * 109.47063 * 119.99760 * 2 1 3 5 5 H 1.08999 * 109.51644 * 300.10502 * 4 2 1 6 6 C 1.53299 * 109.51267 * 179.97438 * 4 2 1 7 7 N 1.47145 * 108.38819 * 187.77688 * 6 4 2 8 8 C 1.34772 * 120.98658 * 230.51484 * 7 6 4 9 9 O 1.21282 * 119.99877 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00266 * 179.97438 * 8 7 6 11 11 H 1.08993 * 109.46975 * 60.00245 * 10 8 7 12 12 C 1.50699 * 109.47038 * 300.00119 * 10 8 7 13 13 H 1.08003 * 120.00239 * 325.63417 * 12 10 8 14 14 C 1.37875 * 120.00049 * 145.64110 * 12 10 8 15 15 N 1.31511 * 120.00372 * 184.98005 * 14 12 10 16 16 Si 1.86801 * 119.99886 * 4.97869 * 14 12 10 17 17 H 1.48494 * 109.47413 * 84.53663 * 16 14 12 18 18 H 1.48501 * 109.47213 * 204.54163 * 16 14 12 19 19 H 1.48501 * 109.47055 * 324.54078 * 16 14 12 20 20 C 1.50703 * 109.46924 * 180.02562 * 10 8 7 21 21 C 1.38235 * 120.00032 * 65.13787 * 20 10 8 22 22 C 1.38240 * 119.99711 * 179.76239 * 21 20 10 23 23 C 1.38240 * 119.99697 * 0.51553 * 22 21 20 24 24 C 1.38235 * 120.00220 * 359.73696 * 23 22 21 25 25 C 1.38227 * 119.99858 * 0.02562 * 24 23 22 26 26 C 1.47158 * 118.03248 * 50.53417 * 7 6 4 27 27 C 1.53295 * 108.38728 * 309.46673 * 26 7 6 28 28 O 1.42958 * 109.22200 * 52.30137 * 27 26 7 29 29 H 1.09007 * 109.47154 * 300.00187 * 1 2 3 30 30 H 1.09000 * 109.46992 * 59.99849 * 1 2 3 31 31 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46800 * 240.00558 * 2 1 3 33 33 H 1.08998 * 109.46923 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47505 * 299.99837 * 3 2 1 35 35 H 1.08995 * 109.47440 * 60.00411 * 3 2 1 36 36 H 1.09001 * 109.68279 * 307.50171 * 6 4 2 37 37 H 1.08997 * 109.67684 * 68.05341 * 6 4 2 38 38 H 0.96994 * 120.00012 * 179.97438 * 15 14 12 39 39 H 1.07993 * 119.99947 * 359.97438 * 21 20 10 40 40 H 1.08000 * 119.99824 * 180.23095 * 22 21 20 41 41 H 1.08006 * 119.99476 * 179.72569 * 23 22 21 42 42 H 1.08004 * 119.99791 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99805 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.68171 * 189.74152 * 26 7 6 45 45 H 1.09000 * 109.68136 * 69.19200 * 26 7 6 46 46 H 1.09000 * 109.51257 * 292.37968 * 27 26 7 47 47 H 1.08999 * 109.55353 * 172.25035 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6756 -0.2090 2.1397 6 6 3.5730 -0.7223 1.2499 7 7 4.0361 -1.5778 2.3539 8 6 4.9521 -1.1349 3.2377 9 8 5.4077 -0.0161 3.1295 10 6 5.4102 -2.0297 4.3604 11 1 5.8594 -2.9320 3.9456 12 6 4.2290 -2.4049 5.2176 13 1 3.4280 -1.6973 5.3730 14 6 4.1708 -3.6515 5.8037 15 7 3.0971 -4.0154 6.4703 16 14 5.6171 -4.8239 5.6508 17 1 6.6148 -4.5197 6.7077 18 1 5.1402 -6.2214 5.8077 19 1 6.2461 -4.6625 4.3153 20 6 6.4282 -1.3013 5.1997 21 6 6.0572 -0.1796 5.9174 22 6 6.9899 0.4856 6.6911 23 6 8.2960 0.0352 6.7387 24 6 8.6681 -1.0834 6.0169 25 6 7.7344 -1.7514 5.2472 26 6 3.4698 -2.9315 2.4642 27 6 1.9418 -2.8228 2.4044 28 8 1.5684 -2.0708 1.2474 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.9403 -1.1155 0.3019 37 1 3.9407 0.2937 1.3936 38 1 3.0561 -4.8925 6.8822 39 1 5.0380 0.1750 5.8762 40 1 6.6991 1.3598 7.2547 41 1 9.0256 0.5576 7.3398 42 1 9.6887 -1.4350 6.0539 43 1 8.0253 -2.6252 4.6829 44 1 3.7692 -3.3786 3.4122 45 1 3.8266 -3.5472 1.6385 46 1 1.5774 -2.3188 3.2995 47 1 1.5071 -3.8207 2.3460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362369289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:54 Heat of formation + Delta-G solvation = -76.189330 kcal Electronic energy + Delta-G solvation = -28022.135974 eV Core-core repulsion = 24361.912437 eV Total energy + Delta-G solvation = -3660.223537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55824 -40.18949 -39.08863 -36.59583 -35.76483 -35.32837 -33.37231 -31.65647 -31.36397 -29.77302 -28.67486 -27.69392 -25.57525 -25.03132 -23.57138 -23.29698 -22.06183 -21.17178 -20.00307 -19.12381 -18.22913 -17.70370 -17.47182 -16.91091 -16.65779 -16.14022 -16.07708 -15.78141 -15.57780 -15.35980 -14.93475 -14.80347 -14.51279 -14.38387 -14.08372 -14.07096 -13.80852 -13.56879 -13.46013 -13.11593 -12.99871 -12.86968 -12.71741 -12.49080 -12.12406 -12.04314 -11.97866 -11.90351 -11.70032 -11.63375 -11.46555 -11.34731 -11.09643 -10.92510 -10.47842 -9.67176 -9.47578 -9.38505 -8.35730 -6.39582 0.61650 0.68056 1.30388 1.38830 1.41805 1.74839 2.09188 2.26934 2.70426 2.93673 3.11045 3.62154 3.84804 3.92526 4.00757 4.06122 4.14113 4.18711 4.21912 4.26912 4.30768 4.36409 4.39535 4.53854 4.55137 4.59431 4.65342 4.79379 4.79406 4.85790 4.87654 4.93492 4.97798 5.01392 5.05104 5.16223 5.18824 5.29431 5.36786 5.39770 5.44398 5.59987 5.68018 5.71948 5.92272 6.16018 6.18444 6.27158 6.43457 6.57066 7.18510 7.29954 8.77669 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.005082 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.922299 B = 5508.345714 C = 6855.146180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 C -0.147 4.147 4 C 0.086 3.914 5 H 0.038 0.962 6 C 0.082 3.918 7 N -0.611 5.611 8 C 0.532 3.468 9 O -0.585 6.585 10 C 0.023 3.977 11 H 0.077 0.923 12 C -0.490 4.490 13 H 0.038 0.962 14 C 0.048 3.952 15 N -0.919 5.919 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.237 1.237 20 C -0.057 4.057 21 C -0.102 4.102 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.124 4.124 25 C -0.153 4.153 26 C 0.061 3.939 27 C 0.062 3.938 28 O -0.380 6.380 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.272 0.728 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 3.619 -9.931 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 C -0.204 4.204 4 C 0.028 3.972 5 H 0.056 0.944 6 C -0.041 4.041 7 N -0.343 5.343 8 C 0.322 3.678 9 O -0.466 6.466 10 C 0.002 3.998 11 H 0.094 0.906 12 C -0.528 4.528 13 H 0.056 0.944 14 C -0.154 4.154 15 N -0.556 5.556 16 Si 0.731 3.269 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.161 1.161 20 C -0.058 4.058 21 C -0.121 4.121 22 C -0.150 4.150 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.171 4.171 26 C -0.062 4.062 27 C -0.015 4.015 28 O -0.299 6.299 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.152 0.848 41 H 0.168 0.832 42 H 0.166 0.834 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.099 0.901 46 H 0.052 0.948 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.047 3.967 -10.033 10.982 hybrid contribution 0.198 -0.599 0.805 1.023 sum 2.245 3.368 -9.229 10.077 Atomic orbital electron populations 1.21726 0.93710 1.02076 1.02080 1.21083 0.97243 0.95926 0.95583 1.21869 1.01206 0.94424 1.02886 1.22547 0.91903 0.83523 0.99256 0.94401 1.22394 0.95205 0.96559 0.89897 1.48054 1.41641 1.16206 1.28414 1.21145 0.77538 0.87239 0.81851 1.90546 1.58578 1.22106 1.75373 1.18509 0.94842 0.94949 0.91493 0.90554 1.20248 1.02692 0.99669 1.30189 0.94417 1.25496 0.97242 0.98754 0.93885 1.69957 1.28821 1.21705 1.35088 0.86344 0.80984 0.78734 0.80848 1.19499 1.20328 1.16059 1.20090 0.93905 0.94831 0.96932 1.20798 0.98615 0.95692 0.96966 1.21358 0.94050 1.00409 0.99231 1.21354 0.96072 0.97382 1.00562 1.21362 0.99903 0.96014 0.96924 1.21230 0.92926 1.01292 1.01701 1.22844 0.94627 0.83175 1.05512 1.22806 0.93845 0.97412 0.87457 1.87855 1.76087 1.23496 1.42461 0.93524 0.90588 0.92719 0.89355 0.92620 0.89775 0.93163 0.89815 0.89457 0.91838 0.89409 0.84768 0.83157 0.83388 0.86260 0.86630 0.90070 0.94783 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.05 71.98 0.65 -2.24 16 2 C -0.08 -1.81 2.72 -10.79 -0.03 -1.84 16 3 C -0.15 -2.96 8.85 71.98 0.64 -2.33 16 4 C 0.09 2.63 2.36 30.69 0.07 2.71 16 5 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 6 C 0.08 2.71 5.32 86.36 0.46 3.17 16 7 N -0.61 -24.13 3.02 -817.35 -2.47 -26.59 16 8 C 0.53 24.22 6.99 87.66 0.61 24.84 16 9 O -0.59 -28.82 14.85 -3.04 -0.05 -28.87 16 10 C 0.02 1.08 1.12 -13.03 -0.01 1.06 16 11 H 0.08 3.38 4.79 -2.39 -0.01 3.37 16 12 C -0.49 -25.17 5.98 25.60 0.15 -25.02 16 13 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16 14 C 0.05 2.46 4.78 84.65 0.40 2.86 16 15 N -0.92 -50.68 13.96 21.45 0.30 -50.38 16 16 Si 0.91 39.11 27.00 68.60 1.85 40.96 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.24 -9.20 6.07 99.48 0.60 -8.60 16 20 C -0.06 -2.54 4.05 -19.86 -0.08 -2.62 16 21 C -0.10 -4.57 8.26 22.27 0.18 -4.38 16 22 C -0.13 -4.84 10.05 22.27 0.22 -4.61 16 23 C -0.14 -4.28 10.05 22.27 0.22 -4.06 16 24 C -0.12 -4.05 10.05 22.27 0.22 -3.83 16 25 C -0.15 -5.98 9.40 22.27 0.21 -5.77 16 26 C 0.06 2.22 6.15 86.35 0.53 2.75 16 27 C 0.06 2.14 6.98 72.08 0.50 2.64 16 28 O -0.38 -12.21 9.72 -148.98 -1.45 -13.66 16 29 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.24 7.69 -2.39 -0.02 1.23 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.19 6.63 -2.39 -0.02 1.17 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.09 3.06 5.85 -2.39 -0.01 3.04 16 38 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.09 4.27 7.92 -2.91 -0.02 4.24 16 40 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 41 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 42 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.12 4.24 7.95 -2.91 -0.02 4.22 16 44 H 0.12 4.86 3.97 -2.39 -0.01 4.85 16 45 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -63.48 367.74 4.00 -59.48 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.84 Total: 35.74 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 4.96 Total: -16.68 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -2.17 Total: -76.97 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -1.49 Total: -42.53 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.85 Total: 40.96 kcal Total: -63.48 4.00 -59.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362369289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.709 kcal (2) G-P(sol) polarization free energy of solvation -63.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds