Wall clock time and date at job start Tue Mar 31 2020 12:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46964 * 2 1 4 4 C 1.52998 * 109.46893 * 119.99479 * 2 1 3 5 5 H 1.09003 * 109.55252 * 60.12905 * 4 2 1 6 6 C 1.53299 * 109.51115 * 180.25047 * 4 2 1 7 7 N 1.47153 * 108.38268 * 172.22789 * 6 4 2 8 8 C 1.34772 * 120.97989 * 129.48937 * 7 6 4 9 9 O 1.21277 * 120.00278 * 359.97438 * 8 7 6 10 10 C 1.50709 * 120.00053 * 179.97438 * 8 7 6 11 11 H 1.08999 * 109.46673 * 323.78758 * 10 8 7 12 12 C 1.50698 * 109.46908 * 83.78841 * 10 8 7 13 13 H 1.07997 * 120.00480 * 30.27614 * 12 10 8 14 14 C 1.37880 * 119.99458 * 210.28526 * 12 10 8 15 15 N 1.31519 * 119.99920 * 180.71382 * 14 12 10 16 16 Si 1.86802 * 120.00218 * 0.70481 * 14 12 10 17 17 H 1.48499 * 109.46775 * 93.57566 * 16 14 12 18 18 H 1.48504 * 109.47304 * 213.57317 * 16 14 12 19 19 H 1.48500 * 109.47127 * 333.57920 * 16 14 12 20 20 C 1.50698 * 109.46908 * 203.78791 * 10 8 7 21 21 C 1.38236 * 120.00100 * 291.56198 * 20 10 8 22 22 C 1.38228 * 120.00076 * 179.78945 * 21 20 10 23 23 C 1.38234 * 120.00322 * 0.46761 * 22 21 20 24 24 C 1.38236 * 119.99467 * 359.76717 * 23 22 21 25 25 C 1.38235 * 119.99949 * 111.84185 * 20 10 8 26 26 C 1.47153 * 118.03919 * 309.46956 * 7 6 4 27 27 C 1.53297 * 108.38572 * 50.53177 * 26 7 6 28 28 O 1.42961 * 109.22302 * 307.70143 * 27 26 7 29 29 H 1.09003 * 109.47391 * 300.00560 * 1 2 3 30 30 H 1.09006 * 109.47255 * 59.99938 * 1 2 3 31 31 H 1.08992 * 109.47520 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47410 * 239.99957 * 2 1 3 33 33 H 1.09009 * 109.46577 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47135 * 299.99558 * 3 2 1 35 35 H 1.08996 * 109.47590 * 59.99857 * 3 2 1 36 36 H 1.08998 * 109.67625 * 52.51031 * 6 4 2 37 37 H 1.08998 * 109.71524 * 291.97319 * 6 4 2 38 38 H 0.96995 * 119.99731 * 179.97438 * 15 14 12 39 39 H 1.08000 * 119.99547 * 0.02562 * 21 20 10 40 40 H 1.08002 * 120.00478 * 180.25793 * 22 21 20 41 41 H 1.08000 * 120.00648 * 179.78597 * 23 22 21 42 42 H 1.08009 * 120.00021 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00013 * 359.97438 * 25 20 10 44 44 H 1.08998 * 109.67830 * 290.81203 * 26 7 6 45 45 H 1.09000 * 109.71422 * 170.27513 * 26 7 6 46 46 H 1.08994 * 109.51657 * 187.77510 * 27 26 7 47 47 H 1.09003 * 109.51038 * 67.62520 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6792 -1.7497 1.2496 6 6 3.5729 -0.7162 1.2534 7 7 4.0351 -1.2448 2.5466 8 6 4.9542 -2.2288 2.6053 9 8 5.4126 -2.6922 1.5826 10 6 5.4124 -2.7532 3.9419 11 1 5.4587 -1.9325 4.6576 12 6 4.4397 -3.7941 4.4332 13 1 3.8960 -4.4020 3.7254 14 6 4.2438 -3.9701 5.7867 15 7 3.4054 -4.8880 6.2159 16 14 5.1694 -2.9049 7.0107 17 1 4.3372 -1.7293 7.3723 18 1 5.4647 -3.6967 8.2319 19 1 6.4418 -2.4419 6.4010 20 6 6.7791 -3.3714 3.7972 21 6 6.9361 -4.5406 3.0766 22 6 8.1904 -5.1053 2.9402 23 6 9.2863 -4.5061 3.5324 24 6 9.1286 -3.3395 4.2571 25 6 7.8749 -2.7724 4.3898 26 6 3.4646 -0.6670 3.7739 27 6 1.9370 -0.6743 3.6469 28 8 1.5638 -0.0479 2.4172 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.9370 0.3027 1.1220 37 1 3.9448 -1.3460 0.4453 38 1 3.2679 -5.0120 7.1680 39 1 6.0793 -5.0108 2.6170 40 1 8.3137 -6.0165 2.3737 41 1 10.2658 -4.9491 3.4288 42 1 9.9847 -2.8715 4.7202 43 1 7.7516 -1.8612 4.9562 44 1 3.8179 0.3569 3.8961 45 1 3.7643 -1.2640 4.6351 46 1 1.4996 -0.1268 4.4817 47 1 1.5758 -1.7027 3.6559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362369292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:09 Heat of formation + Delta-G solvation = -59.758405 kcal Electronic energy + Delta-G solvation = -27928.491491 eV Core-core repulsion = 24268.980452 eV Total energy + Delta-G solvation = -3659.511039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09349 -38.79606 -37.61157 -35.32380 -34.13029 -33.66558 -31.57578 -30.16421 -30.11427 -28.20895 -27.32904 -26.82262 -24.19927 -23.40874 -22.32228 -21.83662 -20.68713 -19.73400 -18.47749 -17.16586 -16.61859 -16.40528 -15.97278 -15.50763 -15.20507 -14.89588 -14.59383 -14.37386 -14.22200 -13.89281 -13.83049 -13.30003 -13.11359 -12.78696 -12.76604 -12.55959 -12.44120 -12.23956 -12.04577 -11.80733 -11.60717 -11.41962 -11.19792 -11.00989 -10.98522 -10.80182 -10.61987 -10.51979 -10.27584 -10.25970 -9.93704 -9.77700 -9.58681 -8.89682 -8.78407 -8.11065 -8.04822 -7.81185 -6.33277 -4.37494 2.13879 2.21690 3.07766 3.22295 3.25339 3.41197 3.54056 3.90693 4.18691 4.60615 4.76392 4.87713 4.99036 5.04585 5.17682 5.23949 5.42483 5.45395 5.55581 5.60118 5.61937 5.65042 5.66217 5.72118 5.77950 5.86612 5.91143 5.93140 5.98359 6.04295 6.06372 6.12778 6.19429 6.24419 6.32014 6.33297 6.40807 6.43382 6.72634 6.86237 6.96116 7.17059 7.24757 7.27655 7.36641 7.60922 7.79352 7.95096 8.22336 8.67604 8.95749 9.23363 10.77609 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.004808 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.077403 B = 5821.976030 C = 6914.861501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.146 4.146 4 C 0.083 3.917 5 H 0.063 0.937 6 C 0.082 3.918 7 N -0.617 5.617 8 C 0.542 3.458 9 O -0.554 6.554 10 C 0.034 3.966 11 H 0.058 0.942 12 C -0.507 4.507 13 H 0.081 0.919 14 C 0.086 3.914 15 N -0.881 5.881 16 Si 0.851 3.149 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.245 1.245 20 C -0.039 4.039 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.131 4.131 26 C 0.076 3.924 27 C 0.050 3.950 28 O -0.377 6.377 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 10.057 -6.240 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.203 4.203 4 C 0.024 3.976 5 H 0.081 0.919 6 C -0.041 4.041 7 N -0.352 5.352 8 C 0.333 3.667 9 O -0.431 6.431 10 C 0.013 3.987 11 H 0.076 0.924 12 C -0.545 4.545 13 H 0.099 0.901 14 C -0.119 4.119 15 N -0.517 5.517 16 Si 0.677 3.323 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.169 1.169 20 C -0.040 4.040 21 C -0.082 4.082 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.047 4.047 27 C -0.028 4.028 28 O -0.296 6.296 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.127 0.873 46 H 0.119 0.881 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.402 9.863 -6.615 11.883 hybrid contribution 0.549 0.115 1.044 1.185 sum 0.146 9.978 -5.571 11.429 Atomic orbital electron populations 1.21747 0.94543 1.01765 1.01901 1.21109 0.96633 0.96897 0.95799 1.21843 1.00950 0.95613 1.01895 1.22468 0.92861 0.96091 0.86134 0.91928 1.22252 0.94230 0.99769 0.87838 1.48054 1.42899 1.38249 1.05998 1.21187 0.76738 0.76488 0.92308 1.90572 1.57153 1.58180 1.37208 1.18405 0.92011 0.97184 0.91135 0.92379 1.20431 1.22483 1.18671 0.92873 0.90138 1.24935 0.94150 0.94897 0.97869 1.69853 1.34481 1.32033 1.15289 0.87225 0.82205 0.81139 0.81759 1.19804 1.20804 1.16866 1.20135 0.94397 0.94909 0.94564 1.20923 0.96454 0.94534 0.96271 1.21061 0.93244 0.99972 1.00913 1.20880 0.98040 0.96831 1.00130 1.20879 0.96692 0.96944 1.00760 1.21053 0.92625 1.00137 1.01122 1.22404 0.94317 0.98951 0.89038 1.22945 0.94116 0.99174 0.86536 1.87858 1.75805 1.52470 1.13475 0.91746 0.92967 0.92894 0.90100 0.92543 0.93041 0.91739 0.91214 0.88751 0.92097 0.86073 0.87111 0.87362 0.87337 0.87202 0.91799 0.87344 0.88126 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.05 37.16 0.34 -1.16 16 2 C -0.09 -0.97 2.82 -90.62 -0.26 -1.23 16 3 C -0.15 -1.52 8.71 37.16 0.32 -1.20 16 4 C 0.08 1.18 2.51 -26.58 -0.07 1.12 16 5 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 6 C 0.08 1.30 5.75 -3.53 -0.02 1.28 16 7 N -0.62 -11.42 3.02 -172.27 -0.52 -11.94 16 8 C 0.54 11.83 6.80 -10.98 -0.07 11.76 16 9 O -0.55 -13.24 14.74 5.56 0.08 -13.16 16 10 C 0.03 0.77 1.01 -94.07 -0.09 0.67 16 11 H 0.06 1.24 3.90 -51.93 -0.20 1.04 16 12 C -0.51 -12.93 7.56 -34.44 -0.26 -13.19 16 13 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 14 C 0.09 2.24 5.47 -17.82 -0.10 2.14 16 15 N -0.88 -24.61 13.96 55.43 0.77 -23.84 16 16 Si 0.85 18.94 26.54 -169.99 -4.51 14.43 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.24 -5.15 4.38 56.52 0.25 -4.90 16 20 C -0.04 -0.87 4.20 -104.62 -0.44 -1.31 16 21 C -0.06 -1.41 8.07 -39.59 -0.32 -1.73 16 22 C -0.13 -2.55 10.05 -39.59 -0.40 -2.95 16 23 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 24 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 25 C -0.13 -2.64 8.46 -39.58 -0.33 -2.97 16 26 C 0.08 1.26 6.37 -3.53 -0.02 1.24 16 27 C 0.05 0.75 6.99 37.31 0.26 1.01 16 28 O -0.38 -5.55 9.04 -35.23 -0.32 -5.87 16 29 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.59 6.27 -51.92 -0.33 0.27 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 36 H 0.07 1.00 6.08 -51.93 -0.32 0.69 16 37 H 0.09 1.59 7.08 -51.93 -0.37 1.22 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.12 2.83 7.72 -52.49 -0.40 2.43 16 40 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.11 2.05 7.14 -52.49 -0.37 1.68 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.11 1.98 5.00 -51.93 -0.26 1.72 16 46 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -29.47 364.01 -8.68 -38.15 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.41 Total: 8.94 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.26 Total: -12.19 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.25 Total: -35.78 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.24 Total: -19.02 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.51 Total: 14.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.47 -8.68 -38.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362369292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.613 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds