Wall clock time and date at job start Tue Mar 31 2020 12:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46964 * 2 1 4 4 C 1.52998 * 109.46893 * 119.99479 * 2 1 3 5 5 H 1.09003 * 109.55252 * 60.12905 * 4 2 1 6 6 C 1.53299 * 109.51115 * 180.25047 * 4 2 1 7 7 N 1.47153 * 108.38268 * 172.22789 * 6 4 2 8 8 C 1.34772 * 120.97989 * 129.48937 * 7 6 4 9 9 O 1.21277 * 120.00278 * 359.97438 * 8 7 6 10 10 C 1.50709 * 120.00053 * 179.97438 * 8 7 6 11 11 H 1.08999 * 109.46673 * 323.78758 * 10 8 7 12 12 C 1.50698 * 109.46908 * 83.78841 * 10 8 7 13 13 H 1.07997 * 120.00480 * 30.27614 * 12 10 8 14 14 C 1.37880 * 119.99458 * 210.28526 * 12 10 8 15 15 N 1.31519 * 119.99920 * 180.71382 * 14 12 10 16 16 Si 1.86802 * 120.00218 * 0.70481 * 14 12 10 17 17 H 1.48499 * 109.46775 * 93.57566 * 16 14 12 18 18 H 1.48504 * 109.47304 * 213.57317 * 16 14 12 19 19 H 1.48500 * 109.47127 * 333.57920 * 16 14 12 20 20 C 1.50698 * 109.46908 * 203.78791 * 10 8 7 21 21 C 1.38236 * 120.00100 * 291.56198 * 20 10 8 22 22 C 1.38228 * 120.00076 * 179.78945 * 21 20 10 23 23 C 1.38234 * 120.00322 * 0.46761 * 22 21 20 24 24 C 1.38236 * 119.99467 * 359.76717 * 23 22 21 25 25 C 1.38235 * 119.99949 * 111.84185 * 20 10 8 26 26 C 1.47153 * 118.03919 * 309.46956 * 7 6 4 27 27 C 1.53297 * 108.38572 * 50.53177 * 26 7 6 28 28 O 1.42961 * 109.22302 * 307.70143 * 27 26 7 29 29 H 1.09003 * 109.47391 * 300.00560 * 1 2 3 30 30 H 1.09006 * 109.47255 * 59.99938 * 1 2 3 31 31 H 1.08992 * 109.47520 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47410 * 239.99957 * 2 1 3 33 33 H 1.09009 * 109.46577 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47135 * 299.99558 * 3 2 1 35 35 H 1.08996 * 109.47590 * 59.99857 * 3 2 1 36 36 H 1.08998 * 109.67625 * 52.51031 * 6 4 2 37 37 H 1.08998 * 109.71524 * 291.97319 * 6 4 2 38 38 H 0.96995 * 119.99731 * 179.97438 * 15 14 12 39 39 H 1.08000 * 119.99547 * 0.02562 * 21 20 10 40 40 H 1.08002 * 120.00478 * 180.25793 * 22 21 20 41 41 H 1.08000 * 120.00648 * 179.78597 * 23 22 21 42 42 H 1.08009 * 120.00021 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00013 * 359.97438 * 25 20 10 44 44 H 1.08998 * 109.67830 * 290.81203 * 26 7 6 45 45 H 1.09000 * 109.71422 * 170.27513 * 26 7 6 46 46 H 1.08994 * 109.51657 * 187.77510 * 27 26 7 47 47 H 1.09003 * 109.51038 * 67.62520 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6792 -1.7497 1.2496 6 6 3.5729 -0.7162 1.2534 7 7 4.0351 -1.2448 2.5466 8 6 4.9542 -2.2288 2.6053 9 8 5.4126 -2.6922 1.5826 10 6 5.4124 -2.7532 3.9419 11 1 5.4587 -1.9325 4.6576 12 6 4.4397 -3.7941 4.4332 13 1 3.8960 -4.4020 3.7254 14 6 4.2438 -3.9701 5.7867 15 7 3.4054 -4.8880 6.2159 16 14 5.1694 -2.9049 7.0107 17 1 4.3372 -1.7293 7.3723 18 1 5.4647 -3.6967 8.2319 19 1 6.4418 -2.4419 6.4010 20 6 6.7791 -3.3714 3.7972 21 6 6.9361 -4.5406 3.0766 22 6 8.1904 -5.1053 2.9402 23 6 9.2863 -4.5061 3.5324 24 6 9.1286 -3.3395 4.2571 25 6 7.8749 -2.7724 4.3898 26 6 3.4646 -0.6670 3.7739 27 6 1.9370 -0.6743 3.6469 28 8 1.5638 -0.0479 2.4172 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.9370 0.3027 1.1220 37 1 3.9448 -1.3460 0.4453 38 1 3.2679 -5.0120 7.1680 39 1 6.0793 -5.0108 2.6170 40 1 8.3137 -6.0165 2.3737 41 1 10.2658 -4.9491 3.4288 42 1 9.9847 -2.8715 4.7202 43 1 7.7516 -1.8612 4.9562 44 1 3.8179 0.3569 3.8961 45 1 3.7643 -1.2640 4.6351 46 1 1.4996 -0.1268 4.4817 47 1 1.5758 -1.7027 3.6559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362369292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:08 Heat of formation + Delta-G solvation = -76.650175 kcal Electronic energy + Delta-G solvation = -27929.223973 eV Core-core repulsion = 24268.980452 eV Total energy + Delta-G solvation = -3660.243521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57479 -40.23096 -39.12492 -36.48593 -35.61570 -35.41121 -33.39698 -31.64209 -31.37970 -29.77252 -28.62023 -27.89039 -25.75022 -24.94344 -23.71592 -23.34843 -22.14794 -20.81954 -20.05324 -19.07912 -18.26188 -17.77150 -17.33565 -16.96985 -16.59332 -16.21902 -16.11137 -15.90377 -15.64488 -15.34610 -14.92174 -14.87479 -14.53333 -14.39473 -14.11472 -14.06614 -13.84098 -13.58074 -13.29319 -13.00308 -12.95023 -12.79482 -12.72136 -12.63676 -12.12962 -12.09690 -11.94816 -11.76870 -11.63320 -11.61529 -11.53092 -11.44664 -11.10228 -10.80025 -10.55975 -9.63226 -9.50931 -9.36721 -8.35647 -6.45258 0.61930 0.69273 1.31948 1.40254 1.49459 1.73931 2.03504 2.30954 2.71859 2.96310 3.12288 3.61005 3.78277 3.90788 3.98185 4.03382 4.11445 4.16484 4.20579 4.21070 4.29929 4.37998 4.42219 4.50213 4.54569 4.58567 4.65102 4.74112 4.81531 4.82525 4.88965 4.89767 4.94390 5.04421 5.08367 5.18351 5.20206 5.31744 5.38200 5.43813 5.50816 5.54729 5.68921 5.74195 5.94829 6.12131 6.16070 6.27607 6.40619 6.57677 7.19090 7.27036 8.79273 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.004808 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.077403 B = 5821.976030 C = 6914.861501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C -0.141 4.141 4 C 0.086 3.914 5 H 0.037 0.963 6 C 0.082 3.918 7 N -0.617 5.617 8 C 0.533 3.467 9 O -0.585 6.585 10 C 0.040 3.960 11 H 0.074 0.926 12 C -0.499 4.499 13 H 0.023 0.977 14 C 0.037 3.963 15 N -0.933 5.933 16 Si 0.911 3.089 17 H -0.246 1.246 18 H -0.292 1.292 19 H -0.222 1.222 20 C -0.067 4.067 21 C -0.097 4.097 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.128 4.128 25 C -0.143 4.143 26 C 0.071 3.929 27 C 0.053 3.947 28 O -0.370 6.370 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.270 0.730 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.133 0.867 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 13.104 -5.716 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 C -0.198 4.198 4 C 0.027 3.973 5 H 0.055 0.945 6 C -0.041 4.041 7 N -0.351 5.351 8 C 0.324 3.676 9 O -0.465 6.465 10 C 0.019 3.981 11 H 0.092 0.908 12 C -0.536 4.536 13 H 0.041 0.959 14 C -0.163 4.163 15 N -0.571 5.571 16 Si 0.733 3.267 17 H -0.170 1.170 18 H -0.218 1.218 19 H -0.145 1.145 20 C -0.068 4.068 21 C -0.115 4.115 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.161 4.161 26 C -0.051 4.051 27 C -0.024 4.024 28 O -0.289 6.289 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.145 0.855 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.151 0.849 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.762 12.953 -6.110 14.430 hybrid contribution -0.139 -0.916 0.762 1.200 sum 1.623 12.036 -5.348 13.271 Atomic orbital electron populations 1.21722 0.93750 1.01559 1.02597 1.21157 0.97270 0.97526 0.94227 1.21805 1.00839 0.94528 1.02622 1.22494 0.91797 0.95476 0.87523 0.94520 1.22431 0.95206 1.00339 0.86080 1.48153 1.41727 1.37264 1.07910 1.21179 0.77475 0.77161 0.91806 1.90538 1.58644 1.59407 1.37906 1.18283 0.91745 0.96438 0.91647 0.90841 1.20280 1.22630 1.18625 0.92088 0.95885 1.25731 0.94835 0.96110 0.99633 1.70008 1.36803 1.34506 1.15738 0.86278 0.82099 0.79947 0.78394 1.17037 1.21800 1.14505 1.20167 0.94934 0.95497 0.96245 1.20835 0.96907 0.95715 0.98083 1.21348 0.92573 1.00705 1.01034 1.21359 0.99047 0.96358 0.98319 1.21377 0.96989 0.96566 0.99601 1.21313 0.92861 1.00862 1.01113 1.22595 0.95057 1.00044 0.87434 1.22955 0.93390 0.98228 0.87852 1.87878 1.75644 1.52037 1.13315 0.92471 0.90794 0.93614 0.89222 0.92614 0.91021 0.92314 0.88840 0.90298 0.92054 0.89775 0.85106 0.83196 0.83205 0.85508 0.88419 0.89174 0.84918 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.05 71.98 0.65 -2.10 16 2 C -0.08 -1.79 2.82 -10.79 -0.03 -1.82 16 3 C -0.14 -2.60 8.71 71.98 0.63 -1.97 16 4 C 0.09 2.47 2.51 30.69 0.08 2.54 16 5 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 6 C 0.08 2.59 5.75 86.35 0.50 3.09 16 7 N -0.62 -23.25 3.02 -817.34 -2.47 -25.72 16 8 C 0.53 24.30 6.80 87.66 0.60 24.89 16 9 O -0.58 -29.58 14.74 -3.02 -0.04 -29.63 16 10 C 0.04 1.86 1.01 -13.03 -0.01 1.85 16 11 H 0.07 3.09 3.90 -2.39 -0.01 3.08 16 12 C -0.50 -27.09 7.56 25.60 0.19 -26.90 16 13 H 0.02 1.47 8.06 -2.91 -0.02 1.44 16 14 C 0.04 1.99 5.47 84.65 0.46 2.45 16 15 N -0.93 -54.86 13.96 21.45 0.30 -54.56 16 16 Si 0.91 38.80 26.54 68.60 1.82 40.62 16 17 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.22 -8.58 4.38 99.48 0.44 -8.14 16 20 C -0.07 -3.03 4.20 -19.87 -0.08 -3.12 16 21 C -0.10 -4.47 8.07 22.27 0.18 -4.29 16 22 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 23 C -0.13 -4.19 10.05 22.27 0.22 -3.97 16 24 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 25 C -0.14 -5.43 8.46 22.27 0.19 -5.24 16 26 C 0.07 2.30 6.37 86.35 0.55 2.85 16 27 C 0.05 1.59 6.99 72.08 0.50 2.09 16 28 O -0.37 -10.59 9.04 -148.98 -1.35 -11.93 16 29 H 0.06 1.22 7.68 -2.39 -0.02 1.20 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.03 6.27 -2.38 -0.01 1.02 16 34 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 36 H 0.09 2.54 6.08 -2.39 -0.01 2.53 16 37 H 0.08 2.76 7.08 -2.39 -0.02 2.74 16 38 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.08 4.36 7.72 -2.91 -0.02 4.34 16 40 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.13 4.27 7.14 -2.91 -0.02 4.25 16 44 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.09 3.27 5.00 -2.39 -0.01 3.25 16 46 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 47 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -69.54 364.01 4.01 -65.53 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.68 Total: 34.14 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 5.07 Total: -18.45 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.17 Total: -80.28 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.39 Total: -41.56 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.82 Total: 40.62 kcal Total: -69.54 4.01 -65.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362369292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.119 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds