Wall clock time and date at job start Tue Mar 31 2020 12:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.53004 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.50899 * 305.09945 * 4 3 2 6 6 C 1.53292 * 109.51239 * 185.00225 * 4 3 2 7 7 N 1.47153 * 108.38306 * 187.77323 * 6 4 3 8 8 C 1.34769 * 120.98253 * 230.55329 * 7 6 4 9 9 O 1.21278 * 120.00229 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00095 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.47070 * 299.99683 * 10 8 7 12 12 C 1.50697 * 109.47302 * 60.00280 * 10 8 7 13 13 H 1.08005 * 119.99674 * 25.45038 * 12 10 8 14 14 C 1.37878 * 120.00062 * 205.45952 * 12 10 8 15 15 N 1.31509 * 120.00107 * 5.65571 * 14 12 10 16 16 Si 1.86799 * 119.99924 * 185.65586 * 14 12 10 17 17 H 1.48502 * 109.46968 * 60.00129 * 16 14 12 18 18 H 1.48498 * 109.47312 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47360 * 299.99674 * 16 14 12 20 20 C 1.50706 * 109.47109 * 180.02562 * 10 8 7 21 21 C 1.38234 * 119.99552 * 293.50346 * 20 10 8 22 22 C 1.38240 * 119.99970 * 179.74594 * 21 20 10 23 23 C 1.38234 * 119.99600 * 0.54931 * 22 21 20 24 24 C 1.38240 * 120.00035 * 359.70508 * 23 22 21 25 25 C 1.38226 * 120.00060 * 113.77521 * 20 10 8 26 26 C 1.47158 * 118.03703 * 50.53211 * 7 6 4 27 27 C 1.53294 * 108.38418 * 309.46602 * 26 7 6 28 28 O 1.42961 * 109.51267 * 65.24898 * 4 3 2 29 29 H 1.08999 * 109.47084 * 60.00168 * 1 2 3 30 30 H 1.09000 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47229 * 300.00235 * 1 2 3 32 32 H 1.09008 * 109.46827 * 119.99791 * 2 1 3 33 33 H 1.08996 * 109.46752 * 239.99418 * 2 1 3 34 34 H 1.08999 * 109.47056 * 299.99848 * 3 2 1 35 35 H 1.09002 * 109.47470 * 60.00320 * 3 2 1 36 36 H 1.09004 * 109.68310 * 307.48900 * 6 4 3 37 37 H 1.08990 * 109.68694 * 68.00959 * 6 4 3 38 38 H 0.96997 * 120.00106 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.00416 * 359.97438 * 21 20 10 40 40 H 1.07999 * 120.00530 * 180.26751 * 22 21 20 41 41 H 1.08002 * 120.00234 * 179.72262 * 23 22 21 42 42 H 1.08001 * 120.00138 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.00290 * 359.97438 * 25 20 10 44 44 H 1.09003 * 109.68249 * 69.18976 * 26 7 6 45 45 H 1.08993 * 109.68326 * 189.74303 * 26 7 6 46 46 H 1.08999 * 109.51368 * 172.22763 * 27 26 7 47 47 H 1.09001 * 109.51282 * 292.32798 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8518 0.8415 6 6 4.0820 2.8819 0.1266 7 7 5.5412 2.8737 -0.0631 8 6 6.3590 3.4805 0.8197 9 8 5.8949 4.0439 1.7883 10 6 7.8503 3.4590 0.6035 11 1 8.2001 2.4268 0.5869 12 6 8.1770 4.1213 -0.7101 13 1 7.5046 4.8572 -1.1258 14 6 9.3343 3.7878 -1.3813 15 7 10.0966 2.8141 -0.9339 16 14 9.8193 4.7191 -2.9263 17 1 9.9943 6.1578 -2.6026 18 1 11.0952 4.1722 -3.4539 19 1 8.7545 4.5679 -3.9502 20 6 8.5312 4.2017 1.7242 21 6 8.3486 5.5650 1.8609 22 6 8.9689 6.2455 2.8920 23 6 9.7809 5.5644 3.7795 24 6 9.9677 4.2019 3.6396 25 6 9.3427 3.5205 2.6119 26 6 6.0813 2.1830 -1.2449 27 6 5.4719 0.7776 -1.3040 28 8 4.0481 0.8781 -1.2228 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.6162 3.5054 -0.6366 37 1 3.8420 3.2717 1.1158 38 1 10.9109 2.5797 -1.4059 39 1 7.7184 6.0981 1.1644 40 1 8.8229 7.3100 3.0015 41 1 10.2692 6.0967 4.5825 42 1 10.6017 3.6697 4.3333 43 1 9.4886 2.4560 2.5027 44 1 5.8167 2.7361 -2.1462 45 1 7.1657 2.1097 -1.1637 46 1 5.7501 0.2993 -2.2431 47 1 5.8439 0.1841 -0.4689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362487576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:13 Heat of formation + Delta-G solvation = -70.299612 kcal Electronic energy + Delta-G solvation = -27446.710660 eV Core-core repulsion = 23786.742520 eV Total energy + Delta-G solvation = -3659.968140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.88608 -38.54412 -37.41671 -35.10504 -34.08454 -33.63761 -31.37315 -30.94652 -29.93409 -28.05418 -27.65344 -25.77516 -23.84458 -23.03185 -21.76600 -21.56369 -20.92523 -20.32656 -18.34395 -16.92116 -16.51229 -16.22816 -15.93504 -15.30573 -15.00503 -14.82488 -14.53980 -14.51999 -14.12062 -13.97374 -13.83496 -13.36527 -12.82743 -12.78167 -12.61491 -12.39081 -12.31173 -12.10751 -11.72907 -11.66763 -11.46765 -11.19662 -11.09423 -11.03164 -10.98079 -10.87338 -10.69708 -10.42313 -10.30074 -10.20435 -10.02002 -9.74742 -9.48741 -8.78994 -8.59842 -7.94662 -7.90518 -7.61634 -6.31947 -4.36681 2.38001 2.40381 3.18483 3.24606 3.27022 3.59904 3.63929 3.95003 4.24924 4.71258 4.80858 4.96397 5.02488 5.04578 5.22796 5.26489 5.40471 5.48210 5.59286 5.60872 5.71969 5.72551 5.77639 5.79225 5.83245 5.86298 5.90468 5.99795 6.06707 6.14596 6.19107 6.25255 6.31339 6.32855 6.48784 6.56619 6.61253 6.83875 6.94919 7.13418 7.17289 7.37073 7.39876 7.44926 7.58382 7.72634 7.93993 8.01991 8.18099 8.63920 9.11550 9.27089 10.75995 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004350 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.283401 B = 6435.575469 C = 7875.606916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.109 4.109 4 C 0.080 3.920 5 H 0.059 0.941 6 C 0.083 3.917 7 N -0.613 5.613 8 C 0.531 3.469 9 O -0.565 6.565 10 C 0.055 3.945 11 H 0.084 0.916 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.077 3.923 15 N -0.876 5.876 16 Si 0.894 3.106 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.010 4.010 21 C -0.084 4.084 22 C -0.135 4.135 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.116 4.116 26 C 0.080 3.920 27 C 0.045 3.955 28 O -0.381 6.381 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.268 0.732 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.131 0.869 46 H 0.101 0.899 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 -4.413 0.965 10.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.147 4.147 4 C 0.021 3.979 5 H 0.077 0.923 6 C -0.041 4.041 7 N -0.347 5.347 8 C 0.323 3.677 9 O -0.444 6.444 10 C 0.034 3.966 11 H 0.102 0.898 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.512 5.512 16 Si 0.721 3.279 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.011 4.011 21 C -0.102 4.102 22 C -0.153 4.153 23 C -0.166 4.166 24 C -0.151 4.151 25 C -0.134 4.134 26 C -0.043 4.043 27 C -0.032 4.032 28 O -0.300 6.300 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.085 0.915 45 H 0.149 0.851 46 H 0.119 0.881 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.784 -4.277 1.294 10.756 hybrid contribution 0.708 0.650 -0.768 1.231 sum -9.076 -3.626 0.527 9.787 Atomic orbital electron populations 1.21780 0.96095 1.01382 1.01651 1.21463 0.95345 0.96588 1.02468 1.21590 0.92536 0.97766 1.02829 1.22469 0.94430 0.93502 0.87491 0.92348 1.22126 0.82242 0.96497 1.03235 1.48001 1.05095 1.56046 1.25600 1.21653 0.90533 0.75502 0.80039 1.90573 1.78365 1.45054 1.30372 1.18095 0.85332 0.99455 0.93740 0.89815 1.20596 1.07313 1.24549 1.02796 0.92007 1.24902 0.95949 0.94420 0.97593 1.69880 1.14054 1.27179 1.40044 0.86602 0.78048 0.80604 0.82644 1.19944 1.21047 1.19878 1.19996 0.94514 0.93751 0.92798 1.20823 0.98317 0.94451 0.96597 1.20953 0.99076 0.98842 0.96477 1.20796 1.01152 0.94631 1.00046 1.20897 1.00881 0.94512 0.98801 1.20962 0.98250 0.99441 0.94753 1.22551 1.02740 0.91095 0.87869 1.23103 0.80575 0.97235 1.02300 1.87879 1.21552 1.82870 1.37739 0.92777 0.92953 0.92922 0.92311 0.91185 0.90982 0.90571 0.91738 0.88905 0.92193 0.87143 0.87621 0.87736 0.87589 0.87103 0.91543 0.85123 0.88130 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.24 5.83 -26.73 -0.16 -1.39 16 3 C -0.11 -1.23 4.92 -26.73 -0.13 -1.36 16 4 C 0.08 1.12 2.78 -26.58 -0.07 1.05 16 5 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 6 C 0.08 1.35 5.93 -3.53 -0.02 1.33 16 7 N -0.61 -11.77 3.02 -172.28 -0.52 -12.29 16 8 C 0.53 11.89 6.99 -10.99 -0.08 11.81 16 9 O -0.56 -13.79 14.91 5.56 0.08 -13.71 16 10 C 0.05 1.28 1.52 -94.07 -0.14 1.13 16 11 H 0.08 2.05 6.78 -51.93 -0.35 1.69 16 12 C -0.51 -12.43 5.34 -34.44 -0.18 -12.62 16 13 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 14 C 0.08 1.86 5.36 -17.82 -0.10 1.77 16 15 N -0.88 -22.12 12.91 55.43 0.72 -21.41 16 16 Si 0.89 19.50 29.54 -169.99 -5.02 14.48 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 20 C -0.01 -0.22 4.29 -104.62 -0.45 -0.67 16 21 C -0.08 -1.90 8.33 -39.58 -0.33 -2.23 16 22 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 23 C -0.15 -2.79 10.05 -39.58 -0.40 -3.18 16 24 C -0.13 -2.59 10.05 -39.58 -0.40 -2.98 16 25 C -0.12 -2.54 9.67 -39.59 -0.38 -2.92 16 26 C 0.08 1.42 5.73 -3.53 -0.02 1.40 16 27 C 0.05 0.67 6.98 37.31 0.26 0.93 16 28 O -0.38 -5.72 9.93 -35.23 -0.35 -6.07 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.58 7.08 -51.93 -0.37 1.22 16 38 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 39 H 0.11 2.55 7.88 -52.49 -0.41 2.14 16 40 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.11 2.33 7.96 -52.49 -0.42 1.92 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.13 2.61 5.10 -51.93 -0.26 2.35 16 46 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -27.72 377.85 -9.71 -37.43 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.69 Total: 7.83 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.63 Total: -11.97 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.20 Total: -33.70 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.27 Total: -19.78 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.72 -9.71 -37.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362487576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.865 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds