Wall clock time and date at job start Tue Mar 31 2020 12:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.53004 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.50899 * 305.09945 * 4 3 2 6 6 C 1.53292 * 109.51239 * 185.00225 * 4 3 2 7 7 N 1.47153 * 108.38306 * 187.77323 * 6 4 3 8 8 C 1.34769 * 120.98253 * 230.55329 * 7 6 4 9 9 O 1.21278 * 120.00229 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00095 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.47070 * 299.99683 * 10 8 7 12 12 C 1.50697 * 109.47302 * 60.00280 * 10 8 7 13 13 H 1.08005 * 119.99674 * 25.45038 * 12 10 8 14 14 C 1.37878 * 120.00062 * 205.45952 * 12 10 8 15 15 N 1.31509 * 120.00107 * 5.65571 * 14 12 10 16 16 Si 1.86799 * 119.99924 * 185.65586 * 14 12 10 17 17 H 1.48502 * 109.46968 * 60.00129 * 16 14 12 18 18 H 1.48498 * 109.47312 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47360 * 299.99674 * 16 14 12 20 20 C 1.50706 * 109.47109 * 180.02562 * 10 8 7 21 21 C 1.38234 * 119.99552 * 293.50346 * 20 10 8 22 22 C 1.38240 * 119.99970 * 179.74594 * 21 20 10 23 23 C 1.38234 * 119.99600 * 0.54931 * 22 21 20 24 24 C 1.38240 * 120.00035 * 359.70508 * 23 22 21 25 25 C 1.38226 * 120.00060 * 113.77521 * 20 10 8 26 26 C 1.47158 * 118.03703 * 50.53211 * 7 6 4 27 27 C 1.53294 * 108.38418 * 309.46602 * 26 7 6 28 28 O 1.42961 * 109.51267 * 65.24898 * 4 3 2 29 29 H 1.08999 * 109.47084 * 60.00168 * 1 2 3 30 30 H 1.09000 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47229 * 300.00235 * 1 2 3 32 32 H 1.09008 * 109.46827 * 119.99791 * 2 1 3 33 33 H 1.08996 * 109.46752 * 239.99418 * 2 1 3 34 34 H 1.08999 * 109.47056 * 299.99848 * 3 2 1 35 35 H 1.09002 * 109.47470 * 60.00320 * 3 2 1 36 36 H 1.09004 * 109.68310 * 307.48900 * 6 4 3 37 37 H 1.08990 * 109.68694 * 68.00959 * 6 4 3 38 38 H 0.96997 * 120.00106 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.00416 * 359.97438 * 21 20 10 40 40 H 1.07999 * 120.00530 * 180.26751 * 22 21 20 41 41 H 1.08002 * 120.00234 * 179.72262 * 23 22 21 42 42 H 1.08001 * 120.00138 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.00290 * 359.97438 * 25 20 10 44 44 H 1.09003 * 109.68249 * 69.18976 * 26 7 6 45 45 H 1.08993 * 109.68326 * 189.74303 * 26 7 6 46 46 H 1.08999 * 109.51368 * 172.22763 * 27 26 7 47 47 H 1.09001 * 109.51282 * 292.32798 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8518 0.8415 6 6 4.0820 2.8819 0.1266 7 7 5.5412 2.8737 -0.0631 8 6 6.3590 3.4805 0.8197 9 8 5.8949 4.0439 1.7883 10 6 7.8503 3.4590 0.6035 11 1 8.2001 2.4268 0.5869 12 6 8.1770 4.1213 -0.7101 13 1 7.5046 4.8572 -1.1258 14 6 9.3343 3.7878 -1.3813 15 7 10.0966 2.8141 -0.9339 16 14 9.8193 4.7191 -2.9263 17 1 9.9943 6.1578 -2.6026 18 1 11.0952 4.1722 -3.4539 19 1 8.7545 4.5679 -3.9502 20 6 8.5312 4.2017 1.7242 21 6 8.3486 5.5650 1.8609 22 6 8.9689 6.2455 2.8920 23 6 9.7809 5.5644 3.7795 24 6 9.9677 4.2019 3.6396 25 6 9.3427 3.5205 2.6119 26 6 6.0813 2.1830 -1.2449 27 6 5.4719 0.7776 -1.3040 28 8 4.0481 0.8781 -1.2228 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.6162 3.5054 -0.6366 37 1 3.8420 3.2717 1.1158 38 1 10.9109 2.5797 -1.4059 39 1 7.7184 6.0981 1.1644 40 1 8.8229 7.3100 3.0015 41 1 10.2692 6.0967 4.5825 42 1 10.6017 3.6697 4.3333 43 1 9.4886 2.4560 2.5027 44 1 5.8167 2.7361 -2.1462 45 1 7.1657 2.1097 -1.1637 46 1 5.7501 0.2993 -2.2431 47 1 5.8439 0.1841 -0.4689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362487576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:12 Heat of formation + Delta-G solvation = -83.578970 kcal Electronic energy + Delta-G solvation = -27447.286496 eV Core-core repulsion = 23786.742520 eV Total energy + Delta-G solvation = -3660.543976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42252 -40.03712 -38.98735 -36.24762 -35.59907 -35.27979 -32.95071 -32.28084 -31.54761 -29.57683 -29.03280 -27.12479 -25.58950 -24.30568 -23.23847 -23.00715 -21.96158 -21.79525 -19.94535 -18.73248 -17.95093 -17.75577 -17.44488 -16.85667 -16.39796 -16.30459 -15.97338 -15.65823 -15.53912 -15.46621 -15.39330 -14.71808 -14.28206 -14.08581 -13.98381 -13.89958 -13.75067 -13.43141 -13.31187 -13.00260 -12.88640 -12.79084 -12.71064 -12.39208 -12.21931 -12.03441 -11.96713 -11.89882 -11.66011 -11.56113 -11.40923 -11.30253 -11.07752 -10.66885 -10.38878 -9.57167 -9.43125 -9.27352 -8.20819 -6.29755 0.74523 0.78869 1.42271 1.45689 1.50676 1.83926 2.12191 2.42184 2.77123 3.08103 3.23448 3.61839 3.92394 3.98231 4.09972 4.13477 4.21244 4.24543 4.27510 4.28702 4.39819 4.41731 4.50269 4.59195 4.59604 4.68527 4.76378 4.84345 4.85364 4.93618 4.95155 4.99093 5.06444 5.08847 5.13603 5.28649 5.34376 5.38295 5.42458 5.50960 5.63836 5.65799 5.77190 5.82453 5.92628 6.17361 6.22043 6.36967 6.50778 6.71203 7.33879 7.38888 8.86769 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004350 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.283401 B = 6435.575469 C = 7875.606916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.104 4.104 4 C 0.085 3.915 5 H 0.053 0.947 6 C 0.080 3.920 7 N -0.612 5.612 8 C 0.526 3.474 9 O -0.592 6.592 10 C 0.061 3.939 11 H 0.064 0.936 12 C -0.512 4.512 13 H 0.048 0.952 14 C 0.045 3.955 15 N -0.898 5.898 16 Si 0.943 3.057 17 H -0.282 1.282 18 H -0.282 1.282 19 H -0.263 1.263 20 C -0.037 4.037 21 C -0.111 4.111 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.130 4.130 25 C -0.139 4.139 26 C 0.081 3.919 27 C 0.053 3.947 28 O -0.381 6.381 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.268 0.732 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.127 0.873 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 -4.342 1.268 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.142 4.142 4 C 0.026 3.974 5 H 0.071 0.929 6 C -0.042 4.042 7 N -0.345 5.345 8 C 0.317 3.683 9 O -0.473 6.473 10 C 0.040 3.960 11 H 0.082 0.918 12 C -0.550 4.550 13 H 0.066 0.934 14 C -0.158 4.158 15 N -0.534 5.534 16 Si 0.769 3.231 17 H -0.208 1.208 18 H -0.207 1.207 19 H -0.188 1.188 20 C -0.038 4.038 21 C -0.129 4.129 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.157 4.157 26 C -0.041 4.041 27 C -0.024 4.024 28 O -0.300 6.300 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.145 0.855 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.262 -4.228 1.569 11.209 hybrid contribution 0.840 0.650 -0.805 1.333 sum -9.422 -3.579 0.764 10.107 Atomic orbital electron populations 1.21752 0.94596 1.02126 1.02124 1.21429 0.96619 0.95535 1.02013 1.21605 0.90050 0.98855 1.03655 1.22516 0.96321 0.91481 0.87052 0.92940 1.22332 0.80377 0.98502 1.03037 1.48066 1.06280 1.54973 1.25171 1.21540 0.90641 0.75741 0.80340 1.90533 1.78701 1.46477 1.31591 1.17947 0.86100 0.98189 0.93810 0.91811 1.20543 1.07182 1.23990 1.03270 0.93386 1.25397 0.95838 0.94931 0.99655 1.69964 1.14299 1.28137 1.41023 0.85836 0.78040 0.78907 0.80351 1.20824 1.20705 1.18811 1.20115 0.95620 0.94383 0.93689 1.20847 0.99669 0.94439 0.97984 1.21321 0.98284 1.00363 0.95477 1.21269 1.00037 0.94459 1.00301 1.21309 1.00158 0.95200 0.98122 1.21116 0.99114 0.99606 0.95903 1.22537 1.01576 0.92877 0.87132 1.23080 0.80476 0.95161 1.03707 1.87895 1.21301 1.82664 1.38110 0.92482 0.92125 0.92281 0.92335 0.92109 0.90572 0.89324 0.90841 0.89772 0.92262 0.88906 0.84770 0.83538 0.84223 0.87507 0.91427 0.87600 0.85529 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 71.98 0.71 -1.51 16 2 C -0.12 -2.22 5.83 30.59 0.18 -2.04 16 3 C -0.10 -2.17 4.92 30.59 0.15 -2.02 16 4 C 0.08 2.33 2.78 30.69 0.09 2.41 16 5 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 6 C 0.08 2.63 5.93 86.35 0.51 3.14 16 7 N -0.61 -24.16 3.02 -817.36 -2.47 -26.63 16 8 C 0.53 24.58 6.99 87.66 0.61 25.20 16 9 O -0.59 -30.03 14.91 -3.02 -0.05 -30.08 16 10 C 0.06 2.96 1.52 -13.03 -0.02 2.94 16 11 H 0.06 3.31 6.78 -2.39 -0.02 3.30 16 12 C -0.51 -25.65 5.34 25.60 0.14 -25.52 16 13 H 0.05 2.48 7.81 -2.91 -0.02 2.46 16 14 C 0.04 2.22 5.36 84.66 0.45 2.67 16 15 N -0.90 -46.39 12.91 21.45 0.28 -46.11 16 16 Si 0.94 40.33 29.54 68.60 2.03 42.36 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 20 C -0.04 -1.79 4.29 -19.87 -0.09 -1.88 16 21 C -0.11 -5.16 8.33 22.27 0.19 -4.97 16 22 C -0.14 -5.29 10.05 22.27 0.22 -5.06 16 23 C -0.14 -4.98 10.05 22.27 0.22 -4.75 16 24 C -0.13 -4.83 10.05 22.27 0.22 -4.61 16 25 C -0.14 -6.18 9.67 22.27 0.22 -5.96 16 26 C 0.08 2.93 5.73 86.35 0.49 3.43 16 27 C 0.05 1.54 6.98 72.08 0.50 2.04 16 28 O -0.38 -10.97 9.93 -148.98 -1.48 -12.45 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.06 1.26 7.83 -2.39 -0.02 1.24 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.08 2.92 7.08 -2.39 -0.02 2.90 16 38 H 0.27 13.32 8.31 -92.71 -0.77 12.54 16 39 H 0.09 4.49 7.88 -2.91 -0.02 4.47 16 40 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 41 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 42 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 43 H 0.11 4.67 7.96 -2.91 -0.02 4.64 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.11 4.41 5.10 -2.39 -0.01 4.40 16 46 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 47 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -60.88 377.85 4.05 -56.82 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.93 Total: 32.58 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.81 Total: -16.49 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -2.19 Total: -72.74 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.52 Total: -42.53 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -60.88 4.05 -56.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362487576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.755 kcal (2) G-P(sol) polarization free energy of solvation -60.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds