Wall clock time and date at job start Tue Mar 31 2020 12:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 C 1.53001 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.51112 * 55.10022 * 4 3 2 6 6 C 1.53716 * 109.44457 * 175.38694 * 4 3 2 7 7 N 1.47147 * 108.16347 * 172.37561 * 6 4 3 8 8 C 1.34781 * 120.98250 * 129.43210 * 7 6 4 9 9 O 1.21283 * 119.99576 * 359.71955 * 8 7 6 10 10 C 1.50698 * 120.00160 * 179.72123 * 8 7 6 11 11 H 1.09006 * 109.46903 * 323.79637 * 10 8 7 12 12 C 1.50695 * 109.47591 * 83.79033 * 10 8 7 13 13 H 1.08011 * 119.99755 * 30.27021 * 12 10 8 14 14 C 1.37872 * 120.00655 * 210.27139 * 12 10 8 15 15 N 1.31517 * 120.00430 * 180.69847 * 14 12 10 16 16 Si 1.86801 * 119.99691 * 0.69973 * 14 12 10 17 17 H 1.48502 * 109.47269 * 93.57864 * 16 14 12 18 18 H 1.48504 * 109.47130 * 213.57809 * 16 14 12 19 19 H 1.48504 * 109.47261 * 333.57605 * 16 14 12 20 20 C 1.50693 * 109.46943 * 203.79605 * 10 8 7 21 21 C 1.38230 * 120.00131 * 291.56752 * 20 10 8 22 22 C 1.38235 * 120.00379 * 179.74784 * 21 20 10 23 23 C 1.38245 * 119.99648 * 0.52609 * 22 21 20 24 24 C 1.38229 * 119.99718 * 359.74976 * 23 22 21 25 25 C 1.38234 * 120.00232 * 359.97438 * 24 23 22 26 26 C 1.47156 * 118.03597 * 309.16139 * 7 6 4 27 27 C 1.53294 * 108.38423 * 50.78105 * 26 7 6 28 28 O 1.42959 * 109.51261 * 295.00208 * 4 3 2 29 29 H 1.09007 * 109.46353 * 60.00611 * 1 2 3 30 30 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47432 * 300.00637 * 1 2 3 32 32 H 1.08993 * 109.47432 * 239.99363 * 2 1 3 33 33 H 1.09004 * 109.46415 * 119.99900 * 2 1 3 34 34 H 1.09004 * 109.47191 * 59.99792 * 3 2 1 35 35 H 1.08995 * 109.47135 * 299.99372 * 3 2 1 36 36 H 1.08998 * 109.83640 * 52.68955 * 6 4 3 37 37 H 1.09006 * 109.74515 * 292.00447 * 6 4 3 38 38 H 0.96996 * 120.00107 * 180.02562 * 15 14 12 39 39 H 1.08004 * 119.99828 * 359.97438 * 21 20 10 40 40 H 1.07993 * 120.00453 * 180.29797 * 22 21 20 41 41 H 1.07995 * 119.99853 * 179.76458 * 23 22 21 42 42 H 1.08006 * 120.00052 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.00116 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.68084 * 170.51264 * 26 7 6 45 45 H 1.09006 * 109.67363 * 291.02504 * 26 7 6 46 46 H 1.09008 * 109.50989 * 67.62702 * 27 26 7 47 47 H 1.08997 * 109.50962 * 187.77487 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9344 0.8545 -0.8418 6 6 4.0818 2.8872 -0.1159 7 7 5.5412 2.8735 0.0719 8 6 6.3597 3.4847 -0.8073 9 8 5.8961 4.0527 -1.7735 10 6 7.8507 3.4622 -0.5900 11 1 8.0634 3.5292 0.4770 12 6 8.4186 2.1773 -1.1356 13 1 7.9462 1.6925 -1.9772 14 6 9.5413 1.6207 -0.5605 15 7 10.0449 0.5067 -1.0453 16 14 10.3470 2.4488 0.9073 17 1 9.8107 1.8631 2.1621 18 1 11.8158 2.2372 0.8505 19 1 10.0551 3.9046 0.8762 20 6 8.4798 4.6318 -1.3021 21 6 8.4953 4.6729 -2.6837 22 6 9.0677 5.7483 -3.3369 23 6 9.6344 6.7776 -2.6085 24 6 9.6239 6.7337 -1.2269 25 6 9.0464 5.6610 -0.5737 26 6 6.0802 2.1779 1.2513 27 6 5.4707 0.7723 1.3042 28 8 4.0470 0.8731 1.2221 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.6186 3.5068 0.6519 37 1 3.8423 3.2843 -1.1025 38 1 10.8345 0.1149 -0.6405 39 1 8.0569 3.8664 -3.2528 40 1 9.0755 5.7827 -4.4163 41 1 10.0849 7.6159 -3.1188 42 1 10.0670 7.5377 -0.6577 43 1 9.0386 5.6266 0.5058 44 1 7.1648 2.1051 1.1707 45 1 5.8153 2.7277 2.1545 46 1 5.8428 0.1824 0.4664 47 1 5.7482 0.2902 2.2415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362487578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:17 Heat of formation + Delta-G solvation = -65.248462 kcal Electronic energy + Delta-G solvation = -27550.569744 eV Core-core repulsion = 23890.820638 eV Total energy + Delta-G solvation = -3659.749106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.01223 -38.71180 -37.56015 -35.12911 -34.12330 -33.68310 -31.66284 -31.15645 -30.13192 -28.21427 -27.86920 -25.99832 -23.51708 -23.19226 -21.92963 -21.76472 -20.94747 -20.43818 -18.45194 -17.17460 -16.62742 -16.52595 -16.07389 -15.41767 -15.14451 -14.85957 -14.56312 -14.54915 -14.36910 -14.04949 -13.83796 -13.34614 -12.95920 -12.87684 -12.77350 -12.59728 -12.55975 -12.22254 -12.11528 -11.83566 -11.50003 -11.34496 -11.20467 -11.01016 -10.99048 -10.89202 -10.68485 -10.52235 -10.29200 -10.26887 -9.93755 -9.79939 -9.58778 -8.90018 -8.78719 -8.11307 -8.07023 -7.81421 -6.33285 -4.37619 2.13647 2.21521 3.07873 3.22381 3.25429 3.40640 3.53005 3.90788 4.18726 4.60379 4.68546 4.97316 4.98970 5.03522 5.17162 5.21107 5.34857 5.39799 5.49749 5.54974 5.57385 5.60664 5.67571 5.71714 5.76338 5.79717 5.83013 5.92800 5.97652 5.99762 6.05387 6.11066 6.17395 6.24212 6.26895 6.32186 6.33496 6.43170 6.72384 6.86044 6.95026 7.16885 7.24562 7.27449 7.36080 7.60708 7.79086 7.94396 8.22129 8.67427 8.95030 9.23327 10.77579 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.004364 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.095714 B = 6413.983212 C = 7510.367040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.109 4.109 4 C 0.078 3.922 5 H 0.064 0.936 6 C 0.085 3.915 7 N -0.618 5.618 8 C 0.542 3.458 9 O -0.553 6.553 10 C 0.034 3.966 11 H 0.058 0.942 12 C -0.508 4.508 13 H 0.081 0.919 14 C 0.087 3.913 15 N -0.881 5.881 16 Si 0.851 3.149 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.245 1.245 20 C -0.039 4.039 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.131 4.131 26 C 0.076 3.924 27 C 0.050 3.950 28 O -0.381 6.381 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 3.035 4.865 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.146 4.146 4 C 0.019 3.981 5 H 0.082 0.918 6 C -0.038 4.038 7 N -0.353 5.353 8 C 0.333 3.667 9 O -0.431 6.431 10 C 0.012 3.988 11 H 0.076 0.924 12 C -0.545 4.545 13 H 0.099 0.901 14 C -0.118 4.118 15 N -0.516 5.516 16 Si 0.677 3.323 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.169 1.169 20 C -0.040 4.040 21 C -0.082 4.082 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.047 4.047 27 C -0.027 4.027 28 O -0.300 6.300 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.522 3.132 4.496 11.864 hybrid contribution 0.971 0.306 0.638 1.201 sum -9.552 3.437 5.134 11.376 Atomic orbital electron populations 1.21777 0.96105 1.01410 1.01583 1.21466 0.95315 0.96544 1.02626 1.21586 0.92469 0.97856 1.02739 1.22580 0.94426 0.93292 0.87767 0.91806 1.22237 0.81461 0.96757 1.03373 1.48054 1.05618 1.55767 1.25824 1.21190 0.89502 0.75184 0.80814 1.90574 1.77807 1.44996 1.29713 1.18404 0.87925 0.95178 0.97244 0.92365 1.20432 1.12486 1.03556 1.18021 0.90129 1.24928 0.95874 0.94249 0.96767 1.69851 1.22415 1.18718 1.40664 0.87228 0.79899 0.82149 0.83068 1.19794 1.20794 1.16867 1.20133 0.96242 0.93413 0.94236 1.20925 0.96145 0.96836 0.94278 1.21066 0.99988 0.95013 0.99140 1.20880 1.01972 0.98904 0.94111 1.20877 1.01546 0.98318 0.94543 1.21055 1.00477 0.94263 0.99136 1.22412 1.01546 0.93079 0.87691 1.22946 0.80486 0.96166 1.03139 1.87870 1.21388 1.82684 1.38016 0.92916 0.92924 0.92847 0.92157 0.91167 0.91090 0.90532 0.91631 0.88627 0.92091 0.86063 0.87101 0.87359 0.87330 0.87195 0.87304 0.91777 0.91634 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.28 5.83 -26.73 -0.16 -1.44 16 3 C -0.11 -1.22 4.93 -26.73 -0.13 -1.35 16 4 C 0.08 1.11 2.79 -26.36 -0.07 1.04 16 5 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 6 C 0.08 1.34 5.95 -3.32 -0.02 1.32 16 7 N -0.62 -11.46 3.01 -172.01 -0.52 -11.97 16 8 C 0.54 11.84 6.80 -10.98 -0.07 11.76 16 9 O -0.55 -13.22 14.74 5.55 0.08 -13.13 16 10 C 0.03 0.76 1.01 -94.08 -0.09 0.67 16 11 H 0.06 1.24 3.90 -51.93 -0.20 1.04 16 12 C -0.51 -12.93 7.56 -34.44 -0.26 -13.19 16 13 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 14 C 0.09 2.24 5.47 -17.82 -0.10 2.15 16 15 N -0.88 -24.58 13.96 55.43 0.77 -23.81 16 16 Si 0.85 18.91 26.54 -169.99 -4.51 14.40 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.24 -5.14 4.38 56.52 0.25 -4.90 16 20 C -0.04 -0.87 4.20 -104.63 -0.44 -1.31 16 21 C -0.06 -1.41 8.07 -39.59 -0.32 -1.73 16 22 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 23 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 24 C -0.13 -2.42 10.05 -39.59 -0.40 -2.81 16 25 C -0.13 -2.64 8.45 -39.58 -0.33 -2.97 16 26 C 0.08 1.26 6.37 -3.53 -0.02 1.24 16 27 C 0.05 0.76 6.98 37.31 0.26 1.02 16 28 O -0.38 -5.69 9.92 -35.23 -0.35 -6.04 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.80 7.82 -51.93 -0.41 0.40 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.59 7.08 -51.93 -0.37 1.22 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.12 2.83 7.72 -52.48 -0.41 2.43 16 40 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.11 2.05 7.13 -52.48 -0.37 1.68 16 44 H 0.11 1.99 5.00 -51.93 -0.26 1.73 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 47 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -29.56 369.99 -9.18 -38.74 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.65 Total: 8.61 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -2.59 Total: -12.37 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.26 Total: -35.79 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.27 Total: -19.18 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.51 Total: 14.40 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.56 -9.18 -38.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362487578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.505 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds