Wall clock time and date at job start Tue Mar 31 2020 12:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 C 1.53001 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.51112 * 55.10022 * 4 3 2 6 6 C 1.53716 * 109.44457 * 175.38694 * 4 3 2 7 7 N 1.47147 * 108.16347 * 172.37561 * 6 4 3 8 8 C 1.34781 * 120.98250 * 129.43210 * 7 6 4 9 9 O 1.21283 * 119.99576 * 359.71955 * 8 7 6 10 10 C 1.50698 * 120.00160 * 179.72123 * 8 7 6 11 11 H 1.09006 * 109.46903 * 323.79637 * 10 8 7 12 12 C 1.50695 * 109.47591 * 83.79033 * 10 8 7 13 13 H 1.08011 * 119.99755 * 30.27021 * 12 10 8 14 14 C 1.37872 * 120.00655 * 210.27139 * 12 10 8 15 15 N 1.31517 * 120.00430 * 180.69847 * 14 12 10 16 16 Si 1.86801 * 119.99691 * 0.69973 * 14 12 10 17 17 H 1.48502 * 109.47269 * 93.57864 * 16 14 12 18 18 H 1.48504 * 109.47130 * 213.57809 * 16 14 12 19 19 H 1.48504 * 109.47261 * 333.57605 * 16 14 12 20 20 C 1.50693 * 109.46943 * 203.79605 * 10 8 7 21 21 C 1.38230 * 120.00131 * 291.56752 * 20 10 8 22 22 C 1.38235 * 120.00379 * 179.74784 * 21 20 10 23 23 C 1.38245 * 119.99648 * 0.52609 * 22 21 20 24 24 C 1.38229 * 119.99718 * 359.74976 * 23 22 21 25 25 C 1.38234 * 120.00232 * 359.97438 * 24 23 22 26 26 C 1.47156 * 118.03597 * 309.16139 * 7 6 4 27 27 C 1.53294 * 108.38423 * 50.78105 * 26 7 6 28 28 O 1.42959 * 109.51261 * 295.00208 * 4 3 2 29 29 H 1.09007 * 109.46353 * 60.00611 * 1 2 3 30 30 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47432 * 300.00637 * 1 2 3 32 32 H 1.08993 * 109.47432 * 239.99363 * 2 1 3 33 33 H 1.09004 * 109.46415 * 119.99900 * 2 1 3 34 34 H 1.09004 * 109.47191 * 59.99792 * 3 2 1 35 35 H 1.08995 * 109.47135 * 299.99372 * 3 2 1 36 36 H 1.08998 * 109.83640 * 52.68955 * 6 4 3 37 37 H 1.09006 * 109.74515 * 292.00447 * 6 4 3 38 38 H 0.96996 * 120.00107 * 180.02562 * 15 14 12 39 39 H 1.08004 * 119.99828 * 359.97438 * 21 20 10 40 40 H 1.07993 * 120.00453 * 180.29797 * 22 21 20 41 41 H 1.07995 * 119.99853 * 179.76458 * 23 22 21 42 42 H 1.08006 * 120.00052 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.00116 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.68084 * 170.51264 * 26 7 6 45 45 H 1.09006 * 109.67363 * 291.02504 * 26 7 6 46 46 H 1.09008 * 109.50989 * 67.62702 * 27 26 7 47 47 H 1.08997 * 109.50962 * 187.77487 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9344 0.8545 -0.8418 6 6 4.0818 2.8872 -0.1159 7 7 5.5412 2.8735 0.0719 8 6 6.3597 3.4847 -0.8073 9 8 5.8961 4.0527 -1.7735 10 6 7.8507 3.4622 -0.5900 11 1 8.0634 3.5292 0.4770 12 6 8.4186 2.1773 -1.1356 13 1 7.9462 1.6925 -1.9772 14 6 9.5413 1.6207 -0.5605 15 7 10.0449 0.5067 -1.0453 16 14 10.3470 2.4488 0.9073 17 1 9.8107 1.8631 2.1621 18 1 11.8158 2.2372 0.8505 19 1 10.0551 3.9046 0.8762 20 6 8.4798 4.6318 -1.3021 21 6 8.4953 4.6729 -2.6837 22 6 9.0677 5.7483 -3.3369 23 6 9.6344 6.7776 -2.6085 24 6 9.6239 6.7337 -1.2269 25 6 9.0464 5.6610 -0.5737 26 6 6.0802 2.1779 1.2513 27 6 5.4707 0.7723 1.3042 28 8 4.0470 0.8731 1.2221 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.6186 3.5068 0.6519 37 1 3.8423 3.2843 -1.1025 38 1 10.8345 0.1149 -0.6405 39 1 8.0569 3.8664 -3.2528 40 1 9.0755 5.7827 -4.4163 41 1 10.0849 7.6159 -3.1188 42 1 10.0670 7.5377 -0.6577 43 1 9.0386 5.6266 0.5058 44 1 7.1648 2.1051 1.1707 45 1 5.8153 2.7277 2.1545 46 1 5.8428 0.1824 0.4664 47 1 5.7482 0.2902 2.2415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362487578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:16 Heat of formation + Delta-G solvation = -82.000694 kcal Electronic energy + Delta-G solvation = -27551.296175 eV Core-core repulsion = 23890.820638 eV Total energy + Delta-G solvation = -3660.475537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.52141 -40.14303 -39.06955 -36.26392 -35.57323 -35.39625 -33.42829 -32.34655 -31.63981 -29.76271 -29.18718 -27.31958 -25.28738 -24.44952 -23.40960 -23.08786 -21.99198 -21.83603 -20.01959 -19.08110 -18.27405 -17.80739 -17.49080 -16.91867 -16.62161 -16.12600 -16.03686 -15.90805 -15.57645 -15.46773 -15.32628 -14.87097 -14.48469 -14.31764 -14.11304 -13.96722 -13.90727 -13.67934 -13.37353 -12.97517 -12.94355 -12.88546 -12.69823 -12.42617 -12.12772 -12.07212 -11.95787 -11.91824 -11.63322 -11.60138 -11.48491 -11.42887 -11.14356 -10.79773 -10.56030 -9.63244 -9.53130 -9.36868 -8.35342 -6.45080 0.61869 0.69261 1.32343 1.40674 1.49813 1.73851 2.02995 2.31301 2.71891 2.96556 3.12327 3.56832 3.81215 3.95303 4.00752 4.04698 4.11061 4.16748 4.21064 4.24166 4.29880 4.36371 4.40955 4.45029 4.53628 4.56500 4.65877 4.70329 4.77933 4.81741 4.87016 4.89441 4.90386 4.97388 5.07105 5.18587 5.27239 5.31753 5.36075 5.38393 5.49090 5.52200 5.68898 5.74166 5.94883 6.11835 6.16072 6.27531 6.40308 6.57812 7.19396 7.26745 8.79553 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.004364 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.095714 B = 6413.983212 C = 7510.367040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.101 4.101 4 C 0.081 3.919 5 H 0.039 0.961 6 C 0.083 3.917 7 N -0.618 5.618 8 C 0.533 3.467 9 O -0.584 6.584 10 C 0.040 3.960 11 H 0.074 0.926 12 C -0.499 4.499 13 H 0.023 0.977 14 C 0.038 3.962 15 N -0.933 5.933 16 Si 0.911 3.089 17 H -0.246 1.246 18 H -0.292 1.292 19 H -0.223 1.223 20 C -0.068 4.068 21 C -0.097 4.097 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.128 4.128 25 C -0.143 4.143 26 C 0.071 3.929 27 C 0.053 3.947 28 O -0.376 6.376 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.270 0.730 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.127 0.873 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.035 0.965 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 5.713 7.487 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.139 4.139 4 C 0.022 3.978 5 H 0.057 0.943 6 C -0.039 4.039 7 N -0.351 5.351 8 C 0.324 3.676 9 O -0.464 6.464 10 C 0.018 3.982 11 H 0.092 0.908 12 C -0.537 4.537 13 H 0.041 0.959 14 C -0.162 4.162 15 N -0.571 5.571 16 Si 0.733 3.267 17 H -0.170 1.170 18 H -0.218 1.218 19 H -0.145 1.145 20 C -0.069 4.069 21 C -0.115 4.115 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.146 4.146 25 C -0.161 4.161 26 C -0.051 4.051 27 C -0.024 4.024 28 O -0.295 6.295 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.145 0.855 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.054 0.946 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.817 5.801 7.144 14.203 hybrid contribution 0.999 -0.525 -0.305 1.169 sum -9.819 5.276 6.839 13.077 Atomic orbital electron populations 1.21740 0.94320 1.02113 1.02273 1.21444 0.96841 0.95811 1.01771 1.21593 0.89718 0.98666 1.03936 1.22612 0.96532 0.91789 0.86853 0.94289 1.22433 0.79852 0.98115 1.03508 1.48153 1.06699 1.54617 1.25676 1.21173 0.89820 0.75556 0.81027 1.90540 1.78241 1.46684 1.30974 1.18286 0.88303 0.93795 0.97786 0.90822 1.20284 1.12396 1.04826 1.16178 0.95854 1.25720 0.96164 0.94564 0.99794 1.70006 1.23339 1.20830 1.42875 0.86281 0.77960 0.82431 0.80058 1.17039 1.21796 1.14514 1.20167 0.97747 0.94544 0.94413 1.20840 0.98413 0.97578 0.94712 1.21355 0.99338 0.94486 1.00510 1.21358 1.00362 0.99018 0.94325 1.21376 0.99882 0.98266 0.95038 1.21315 1.00447 0.94331 1.00049 1.22600 1.00598 0.94026 0.87913 1.22955 0.80625 0.95248 1.03560 1.87886 1.20987 1.82588 1.37998 0.92309 0.92289 0.92048 0.93060 0.92068 0.89736 0.89395 0.89109 0.89994 0.92050 0.89741 0.85087 0.83198 0.83205 0.85504 0.89132 0.88390 0.94624 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.59 16 2 C -0.12 -2.45 5.83 30.59 0.18 -2.27 16 3 C -0.10 -2.15 4.93 30.59 0.15 -2.00 16 4 C 0.08 2.31 2.79 30.84 0.09 2.39 16 5 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 6 C 0.08 2.62 5.95 86.50 0.51 3.13 16 7 N -0.62 -23.22 3.01 -816.52 -2.46 -25.68 16 8 C 0.53 24.24 6.80 87.66 0.60 24.84 16 9 O -0.58 -29.43 14.74 -3.04 -0.04 -29.48 16 10 C 0.04 1.83 1.01 -13.04 -0.01 1.82 16 11 H 0.07 3.09 3.90 -2.38 -0.01 3.08 16 12 C -0.50 -27.09 7.56 25.60 0.19 -26.89 16 13 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 14 C 0.04 2.02 5.47 84.65 0.46 2.48 16 15 N -0.93 -54.78 13.96 21.45 0.30 -54.48 16 16 Si 0.91 38.72 26.54 68.60 1.82 40.54 16 17 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.22 -8.57 4.38 99.48 0.44 -8.13 16 20 C -0.07 -3.04 4.20 -19.87 -0.08 -3.13 16 21 C -0.10 -4.46 8.07 22.27 0.18 -4.28 16 22 C -0.14 -5.20 10.05 22.27 0.22 -4.97 16 23 C -0.13 -4.18 10.05 22.27 0.22 -3.96 16 24 C -0.13 -4.06 10.05 22.27 0.22 -3.84 16 25 C -0.14 -5.42 8.45 22.27 0.19 -5.24 16 26 C 0.07 2.29 6.37 86.35 0.55 2.84 16 27 C 0.05 1.60 6.98 72.08 0.50 2.11 16 28 O -0.38 -10.89 9.92 -148.98 -1.48 -12.37 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.34 7.82 -2.39 -0.02 1.33 16 34 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.08 2.81 7.08 -2.38 -0.02 2.79 16 38 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.08 4.37 7.72 -2.91 -0.02 4.35 16 40 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.13 4.27 7.13 -2.91 -0.02 4.25 16 44 H 0.09 3.28 5.00 -2.39 -0.01 3.27 16 45 H 0.10 2.53 8.14 -2.38 -0.02 2.52 16 46 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -69.54 369.99 3.70 -65.84 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.67 Total: 34.16 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 4.89 Total: -18.54 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.16 Total: -80.16 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.52 Total: -41.85 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.82 Total: 40.54 kcal Total: -69.54 3.70 -65.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362487578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.156 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds