Wall clock time and date at job start Tue Mar 31 2020 12:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47401 * 2 1 4 4 C 1.53001 * 109.47412 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.50941 * 55.10031 * 4 3 2 6 6 C 1.53708 * 109.44311 * 175.38832 * 4 3 2 7 7 N 1.47148 * 108.16408 * 172.36982 * 6 4 3 8 8 C 1.34776 * 120.97959 * 129.42782 * 7 6 4 9 9 O 1.21276 * 120.00659 * 359.72106 * 8 7 6 10 10 C 1.50703 * 119.99630 * 179.72195 * 8 7 6 11 11 H 1.08999 * 109.47717 * 60.00573 * 10 8 7 12 12 C 1.50697 * 109.47564 * 300.00155 * 10 8 7 13 13 H 1.08005 * 119.99787 * 335.08098 * 12 10 8 14 14 C 1.37875 * 120.00244 * 155.07892 * 12 10 8 15 15 N 1.31513 * 119.99654 * 183.99584 * 14 12 10 16 16 Si 1.86795 * 120.00282 * 3.99541 * 14 12 10 17 17 H 1.48506 * 109.46923 * 84.82799 * 16 14 12 18 18 H 1.48492 * 109.47402 * 204.82812 * 16 14 12 19 19 H 1.48501 * 109.46981 * 324.83438 * 16 14 12 20 20 C 1.50709 * 109.47225 * 180.02562 * 10 8 7 21 21 C 1.38234 * 119.99894 * 246.48712 * 20 10 8 22 22 C 1.38232 * 119.99784 * 180.02562 * 21 20 10 23 23 C 1.38238 * 120.00094 * 359.94628 * 22 21 20 24 24 C 1.38230 * 119.99846 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00387 * 0.06697 * 24 23 22 26 26 C 1.47149 * 118.03472 * 309.16242 * 7 6 4 27 27 C 1.53295 * 108.38808 * 50.78416 * 26 7 6 28 28 O 1.42964 * 109.50738 * 294.99772 * 4 3 2 29 29 H 1.09002 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46844 * 300.00133 * 1 2 3 31 31 H 1.08998 * 109.47069 * 60.00092 * 1 2 3 32 32 H 1.09003 * 109.47537 * 240.00068 * 2 1 3 33 33 H 1.08994 * 109.47517 * 120.00101 * 2 1 3 34 34 H 1.08995 * 109.47011 * 59.99662 * 3 2 1 35 35 H 1.09004 * 109.46521 * 300.00074 * 3 2 1 36 36 H 1.09004 * 109.83831 * 52.68851 * 6 4 3 37 37 H 1.09002 * 109.74894 * 292.00012 * 6 4 3 38 38 H 0.97006 * 120.00350 * 179.97438 * 15 14 12 39 39 H 1.07996 * 119.99976 * 359.97250 * 21 20 10 40 40 H 1.08003 * 120.00360 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00180 * 179.72250 * 23 22 21 42 42 H 1.08006 * 120.00224 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.00690 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.68109 * 170.50636 * 26 7 6 45 45 H 1.08997 * 109.68061 * 291.01789 * 26 7 6 46 46 H 1.08998 * 109.51817 * 67.61897 * 27 26 7 47 47 H 1.08999 * 109.51655 * 187.77751 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8548 -0.8435 6 6 4.0816 2.8873 -0.1172 7 7 5.5412 2.8735 0.0696 8 6 6.3589 3.4850 -0.8102 9 8 5.8947 4.0533 -1.7758 10 6 7.8501 3.4624 -0.5939 11 1 8.2002 2.4302 -0.5827 12 6 8.1768 4.1180 0.7231 13 1 7.5001 4.8453 1.1467 14 6 9.3395 3.7892 1.3872 15 7 9.5868 4.3016 2.5728 16 14 10.5634 2.6161 0.6029 17 1 11.4608 3.3725 -0.3070 18 1 11.3710 1.9615 1.6632 19 1 9.8313 1.5817 -0.1713 20 6 8.5310 4.2120 -1.7101 21 6 9.3385 3.5354 -2.6052 22 6 9.9634 4.2230 -3.6286 23 6 9.7800 5.5871 -3.7577 24 6 8.9721 6.2635 -2.8630 25 6 8.3487 5.5763 -1.8384 26 6 6.0811 2.1777 1.2483 27 6 5.4718 0.7720 1.3012 28 8 4.0479 0.8729 1.2204 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.6190 3.5066 0.6513 37 1 3.8414 3.2846 -1.1034 38 1 10.4047 4.0701 3.0403 39 1 9.4817 2.4697 -2.5043 40 1 10.5946 3.6945 -4.3277 41 1 10.2718 6.1251 -4.5546 42 1 8.8291 7.3293 -2.9636 43 1 7.7177 6.1048 -1.1391 44 1 7.1656 2.1048 1.1668 45 1 5.8170 2.7271 2.1519 46 1 5.8431 0.1824 0.4631 47 1 5.7499 0.2896 2.2382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362487584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:24 Heat of formation + Delta-G solvation = -64.729577 kcal Electronic energy + Delta-G solvation = -27540.507429 eV Core-core repulsion = 23880.780824 eV Total energy + Delta-G solvation = -3659.726605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00161 -38.72744 -37.56651 -35.14579 -34.15082 -33.66509 -31.62658 -31.16365 -30.15339 -28.21587 -27.86438 -25.90440 -23.61213 -23.07688 -21.93807 -21.76235 -20.98136 -20.41920 -18.40327 -17.17920 -16.56152 -16.54068 -16.12116 -15.36542 -15.06697 -14.87363 -14.68584 -14.55165 -14.31428 -14.04914 -13.80494 -13.36264 -12.97057 -12.82439 -12.76971 -12.66013 -12.45381 -12.16713 -12.11758 -11.93970 -11.55426 -11.28611 -11.20693 -11.03856 -10.95421 -10.91439 -10.71961 -10.51148 -10.29425 -10.26858 -9.96193 -9.80423 -9.58192 -8.98611 -8.72796 -8.15099 -7.98125 -7.83606 -6.34588 -4.37663 2.12746 2.19373 3.11796 3.20546 3.26538 3.46285 3.54845 3.89629 4.18339 4.59156 4.67272 4.93353 4.95222 5.00195 5.16827 5.22307 5.32793 5.43294 5.51339 5.54915 5.56368 5.58743 5.65259 5.72437 5.74821 5.79093 5.81429 5.90775 5.97224 5.98855 6.09681 6.13671 6.22970 6.26577 6.28844 6.31655 6.44737 6.54970 6.70489 6.83340 7.04612 7.15316 7.22442 7.23866 7.34112 7.57091 7.77474 8.01493 8.18720 8.64617 8.97962 9.22059 10.75876 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.004316 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.100909 B = 6486.496695 C = 7610.013088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.110 4.110 4 C 0.079 3.921 5 H 0.059 0.941 6 C 0.083 3.917 7 N -0.612 5.612 8 C 0.541 3.459 9 O -0.559 6.559 10 C 0.022 3.978 11 H 0.068 0.932 12 C -0.510 4.510 13 H 0.083 0.917 14 C 0.088 3.912 15 N -0.880 5.880 16 Si 0.860 3.140 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.262 1.262 20 C -0.031 4.031 21 C -0.138 4.138 22 C -0.129 4.129 23 C -0.142 4.142 24 C -0.130 4.130 25 C -0.070 4.070 26 C 0.083 3.917 27 C 0.044 3.956 28 O -0.379 6.379 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.269 0.731 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.075 0.925 46 H 0.049 0.951 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 -7.057 -4.780 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.021 3.979 5 H 0.077 0.923 6 C -0.040 4.040 7 N -0.346 5.346 8 C 0.332 3.668 9 O -0.438 6.438 10 C 0.001 3.999 11 H 0.086 0.914 12 C -0.547 4.547 13 H 0.101 0.899 14 C -0.117 4.117 15 N -0.515 5.515 16 Si 0.687 3.313 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.187 1.187 20 C -0.032 4.032 21 C -0.156 4.156 22 C -0.147 4.147 23 C -0.160 4.160 24 C -0.148 4.148 25 C -0.089 4.089 26 C -0.040 4.040 27 C -0.033 4.033 28 O -0.298 6.298 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.136 -6.790 -4.970 12.420 hybrid contribution 1.126 -0.423 -0.376 1.260 sum -8.010 -7.213 -5.346 12.032 Atomic orbital electron populations 1.21777 0.96058 1.01395 1.01688 1.21460 0.95392 0.96568 1.02439 1.21595 0.92443 0.97799 1.02925 1.22564 0.94535 0.93329 0.87499 0.92329 1.22241 0.81784 0.96551 1.03417 1.47951 1.05315 1.55570 1.25734 1.21061 0.89694 0.75860 0.80181 1.90585 1.78109 1.44685 1.30401 1.18562 0.88078 0.98085 0.95221 0.91390 1.20489 1.07811 1.26049 1.00382 0.89935 1.24892 0.97041 0.95577 0.94221 1.69852 1.25899 1.43262 1.12512 0.87114 0.82580 0.82009 0.79634 1.18931 1.21115 1.18742 1.20094 0.95271 0.94485 0.93367 1.20987 0.99678 0.99131 0.95809 1.20882 1.00687 0.94621 0.98534 1.20870 1.00708 0.94509 0.99913 1.21044 0.98494 0.99195 0.96030 1.20856 0.97647 0.93993 0.96363 1.22518 1.01874 0.91219 0.88396 1.23130 0.80811 0.97112 1.02294 1.87894 1.21351 1.82591 1.37982 0.92951 0.92732 0.92912 0.92361 0.91169 0.90874 0.90533 0.91393 0.88796 0.92043 0.87414 0.87250 0.87281 0.87064 0.86407 0.86278 0.90683 0.93280 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.15 0.37 -0.90 16 2 C -0.12 -1.21 5.83 -26.73 -0.16 -1.36 16 3 C -0.11 -1.20 4.93 -26.73 -0.13 -1.33 16 4 C 0.08 1.09 2.79 -26.36 -0.07 1.01 16 5 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 6 C 0.08 1.34 5.95 -3.32 -0.02 1.32 16 7 N -0.61 -11.56 3.01 -172.02 -0.52 -12.08 16 8 C 0.54 11.82 6.99 -10.98 -0.08 11.74 16 9 O -0.56 -13.26 14.91 5.56 0.08 -13.18 16 10 C 0.02 0.49 1.10 -94.07 -0.10 0.39 16 11 H 0.07 1.50 4.96 -51.93 -0.26 1.24 16 12 C -0.51 -12.67 5.90 -34.44 -0.20 -12.87 16 13 H 0.08 2.29 8.05 -52.48 -0.42 1.87 16 14 C 0.09 2.25 5.40 -17.82 -0.10 2.15 16 15 N -0.88 -24.11 13.96 55.43 0.77 -23.34 16 16 Si 0.86 19.55 25.96 -169.99 -4.41 15.13 16 17 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.26 -5.52 6.14 56.52 0.35 -5.18 16 20 C -0.03 -0.70 3.59 -104.62 -0.38 -1.07 16 21 C -0.14 -2.82 8.58 -39.59 -0.34 -3.16 16 22 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.14 -2.51 10.05 -39.58 -0.40 -2.90 16 24 C -0.13 -2.47 10.05 -39.59 -0.40 -2.86 16 25 C -0.07 -1.55 8.33 -39.58 -0.33 -1.88 16 26 C 0.08 1.45 5.72 -3.54 -0.02 1.43 16 27 C 0.04 0.63 6.99 37.31 0.26 0.89 16 28 O -0.38 -5.57 9.92 -35.23 -0.35 -5.92 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.56 7.08 -51.93 -0.37 1.19 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.11 2.05 7.95 -52.49 -0.42 1.63 16 40 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 43 H 0.12 2.68 7.88 -52.48 -0.41 2.27 16 44 H 0.12 2.30 5.11 -51.93 -0.27 2.04 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -29.06 371.16 -8.98 -38.04 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.66 Total: 7.90 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.49 Total: -12.16 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.26 Total: -35.42 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.27 Total: -19.09 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.41 Total: 15.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.06 -8.98 -38.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362487584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.686 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds