Wall clock time and date at job start Tue Mar 31 2020 12:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47401 * 2 1 4 4 C 1.53001 * 109.47412 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.50941 * 55.10031 * 4 3 2 6 6 C 1.53708 * 109.44311 * 175.38832 * 4 3 2 7 7 N 1.47148 * 108.16408 * 172.36982 * 6 4 3 8 8 C 1.34776 * 120.97959 * 129.42782 * 7 6 4 9 9 O 1.21276 * 120.00659 * 359.72106 * 8 7 6 10 10 C 1.50703 * 119.99630 * 179.72195 * 8 7 6 11 11 H 1.08999 * 109.47717 * 60.00573 * 10 8 7 12 12 C 1.50697 * 109.47564 * 300.00155 * 10 8 7 13 13 H 1.08005 * 119.99787 * 335.08098 * 12 10 8 14 14 C 1.37875 * 120.00244 * 155.07892 * 12 10 8 15 15 N 1.31513 * 119.99654 * 183.99584 * 14 12 10 16 16 Si 1.86795 * 120.00282 * 3.99541 * 14 12 10 17 17 H 1.48506 * 109.46923 * 84.82799 * 16 14 12 18 18 H 1.48492 * 109.47402 * 204.82812 * 16 14 12 19 19 H 1.48501 * 109.46981 * 324.83438 * 16 14 12 20 20 C 1.50709 * 109.47225 * 180.02562 * 10 8 7 21 21 C 1.38234 * 119.99894 * 246.48712 * 20 10 8 22 22 C 1.38232 * 119.99784 * 180.02562 * 21 20 10 23 23 C 1.38238 * 120.00094 * 359.94628 * 22 21 20 24 24 C 1.38230 * 119.99846 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00387 * 0.06697 * 24 23 22 26 26 C 1.47149 * 118.03472 * 309.16242 * 7 6 4 27 27 C 1.53295 * 108.38808 * 50.78416 * 26 7 6 28 28 O 1.42964 * 109.50738 * 294.99772 * 4 3 2 29 29 H 1.09002 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46844 * 300.00133 * 1 2 3 31 31 H 1.08998 * 109.47069 * 60.00092 * 1 2 3 32 32 H 1.09003 * 109.47537 * 240.00068 * 2 1 3 33 33 H 1.08994 * 109.47517 * 120.00101 * 2 1 3 34 34 H 1.08995 * 109.47011 * 59.99662 * 3 2 1 35 35 H 1.09004 * 109.46521 * 300.00074 * 3 2 1 36 36 H 1.09004 * 109.83831 * 52.68851 * 6 4 3 37 37 H 1.09002 * 109.74894 * 292.00012 * 6 4 3 38 38 H 0.97006 * 120.00350 * 179.97438 * 15 14 12 39 39 H 1.07996 * 119.99976 * 359.97250 * 21 20 10 40 40 H 1.08003 * 120.00360 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00180 * 179.72250 * 23 22 21 42 42 H 1.08006 * 120.00224 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.00690 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.68109 * 170.50636 * 26 7 6 45 45 H 1.08997 * 109.68061 * 291.01789 * 26 7 6 46 46 H 1.08998 * 109.51817 * 67.61897 * 27 26 7 47 47 H 1.08999 * 109.51655 * 187.77751 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8548 -0.8435 6 6 4.0816 2.8873 -0.1172 7 7 5.5412 2.8735 0.0696 8 6 6.3589 3.4850 -0.8102 9 8 5.8947 4.0533 -1.7758 10 6 7.8501 3.4624 -0.5939 11 1 8.2002 2.4302 -0.5827 12 6 8.1768 4.1180 0.7231 13 1 7.5001 4.8453 1.1467 14 6 9.3395 3.7892 1.3872 15 7 9.5868 4.3016 2.5728 16 14 10.5634 2.6161 0.6029 17 1 11.4608 3.3725 -0.3070 18 1 11.3710 1.9615 1.6632 19 1 9.8313 1.5817 -0.1713 20 6 8.5310 4.2120 -1.7101 21 6 9.3385 3.5354 -2.6052 22 6 9.9634 4.2230 -3.6286 23 6 9.7800 5.5871 -3.7577 24 6 8.9721 6.2635 -2.8630 25 6 8.3487 5.5763 -1.8384 26 6 6.0811 2.1777 1.2483 27 6 5.4718 0.7720 1.3012 28 8 4.0479 0.8729 1.2204 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.6190 3.5066 0.6513 37 1 3.8414 3.2846 -1.1034 38 1 10.4047 4.0701 3.0403 39 1 9.4817 2.4697 -2.5043 40 1 10.5946 3.6945 -4.3277 41 1 10.2718 6.1251 -4.5546 42 1 8.8291 7.3293 -2.9636 43 1 7.7177 6.1048 -1.1391 44 1 7.1656 2.1048 1.1668 45 1 5.8170 2.7271 2.1519 46 1 5.8431 0.1824 0.4631 47 1 5.7499 0.2896 2.2382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362487584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:24 Heat of formation + Delta-G solvation = -80.684244 kcal Electronic energy + Delta-G solvation = -27541.199276 eV Core-core repulsion = 23880.780824 eV Total energy + Delta-G solvation = -3660.418451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.52233 -40.14449 -39.06696 -36.28338 -35.61499 -35.31818 -33.40003 -32.32157 -31.66424 -29.77253 -29.15919 -27.20758 -25.37465 -24.32347 -23.42390 -23.07605 -21.98143 -21.81291 -19.96940 -19.11621 -18.18498 -17.80900 -17.51646 -16.86621 -16.49006 -16.37282 -16.02246 -15.76618 -15.54427 -15.43579 -15.34303 -14.89662 -14.43370 -14.31941 -14.08917 -13.96255 -13.86886 -13.68457 -13.49757 -13.05450 -12.93806 -12.83840 -12.69951 -12.40301 -12.09984 -12.04516 -11.98740 -11.90441 -11.63338 -11.56814 -11.46079 -11.41263 -11.09853 -10.89516 -10.53255 -9.67629 -9.47833 -9.40556 -8.35063 -6.41059 0.60274 0.66570 1.30214 1.39305 1.42145 1.73668 2.05758 2.28473 2.75954 2.95264 3.09287 3.58789 3.85989 3.96002 4.04596 4.07862 4.09717 4.16641 4.22090 4.25928 4.29168 4.35538 4.39006 4.50107 4.53842 4.59863 4.67314 4.74512 4.78058 4.83465 4.87565 4.91195 4.97817 5.05468 5.10617 5.15337 5.28550 5.28603 5.36841 5.38628 5.51124 5.57261 5.66699 5.71011 5.92230 6.16277 6.17355 6.25875 6.41692 6.58072 7.20708 7.27739 8.79039 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.004316 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.100909 B = 6486.496695 C = 7610.013088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.105 4.105 4 C 0.086 3.914 5 H 0.060 0.940 6 C 0.080 3.920 7 N -0.612 5.612 8 C 0.534 3.466 9 O -0.584 6.584 10 C 0.027 3.973 11 H 0.075 0.925 12 C -0.493 4.493 13 H 0.036 0.964 14 C 0.046 3.954 15 N -0.926 5.926 16 Si 0.911 3.089 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.234 1.234 20 C -0.059 4.059 21 C -0.154 4.154 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.134 4.134 25 C -0.102 4.102 26 C 0.082 3.918 27 C 0.052 3.948 28 O -0.381 6.381 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.271 0.729 39 H 0.121 0.879 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.135 0.865 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -8.877 -6.949 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.143 4.143 4 C 0.027 3.973 5 H 0.078 0.922 6 C -0.042 4.042 7 N -0.344 5.344 8 C 0.325 3.675 9 O -0.465 6.465 10 C 0.006 3.994 11 H 0.093 0.907 12 C -0.531 4.531 13 H 0.055 0.945 14 C -0.155 4.155 15 N -0.563 5.563 16 Si 0.735 3.265 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.158 1.158 20 C -0.060 4.060 21 C -0.172 4.172 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.121 4.121 26 C -0.040 4.040 27 C -0.025 4.025 28 O -0.300 6.300 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.153 0.847 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.884 -8.636 -7.130 14.295 hybrid contribution 0.975 0.266 0.272 1.047 sum -7.909 -8.370 -6.858 13.403 Atomic orbital electron populations 1.21754 0.94719 1.02123 1.02073 1.21422 0.96529 0.95456 1.02109 1.21615 0.90183 0.98919 1.03595 1.22609 0.96262 0.91172 0.87234 0.92224 1.22449 0.80003 0.98703 1.03092 1.48055 1.06499 1.54621 1.25253 1.21035 0.89923 0.76051 0.80518 1.90550 1.78434 1.45857 1.31636 1.18456 0.88783 0.98043 0.94152 0.90735 1.20304 1.06770 1.24604 1.01430 0.94529 1.25497 0.98524 0.97124 0.94366 1.69972 1.26730 1.45441 1.14177 0.86284 0.80409 0.80817 0.79007 1.19586 1.20768 1.15770 1.20118 0.96663 0.94737 0.94473 1.21250 0.99651 1.00033 0.96254 1.21378 0.99887 0.95074 0.97992 1.21361 0.99362 0.94662 0.99927 1.21370 0.98015 1.00537 0.95227 1.20832 0.99132 0.94428 0.97682 1.22513 1.01132 0.93178 0.87205 1.23134 0.80569 0.94699 1.04124 1.87911 1.21295 1.82345 1.38485 0.92091 0.92645 0.92261 0.92081 0.92111 0.90861 0.89246 0.91245 0.89420 0.92004 0.86110 0.83331 0.83116 0.84729 0.89309 0.88097 0.92110 0.92205 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 71.98 0.71 -1.47 16 2 C -0.12 -2.12 5.83 30.59 0.18 -1.94 16 3 C -0.11 -2.15 4.93 30.60 0.15 -2.00 16 4 C 0.09 2.26 2.79 30.83 0.09 2.35 16 5 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 6 C 0.08 2.60 5.95 86.49 0.51 3.11 16 7 N -0.61 -23.77 3.01 -816.56 -2.46 -26.23 16 8 C 0.53 24.15 6.99 87.66 0.61 24.76 16 9 O -0.58 -28.63 14.91 -3.02 -0.04 -28.67 16 10 C 0.03 1.24 1.10 -13.03 -0.01 1.23 16 11 H 0.07 3.27 4.96 -2.39 -0.01 3.25 16 12 C -0.49 -25.77 5.90 25.60 0.15 -25.62 16 13 H 0.04 2.20 8.05 -2.91 -0.02 2.17 16 14 C 0.05 2.42 5.40 84.65 0.46 2.87 16 15 N -0.93 -52.76 13.96 21.45 0.30 -52.46 16 16 Si 0.91 40.10 25.96 68.60 1.78 41.88 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.23 -9.14 6.14 99.48 0.61 -8.53 16 20 C -0.06 -2.65 3.59 -19.86 -0.07 -2.72 16 21 C -0.15 -6.00 8.58 22.27 0.19 -5.81 16 22 C -0.13 -4.12 10.05 22.27 0.22 -3.89 16 23 C -0.14 -4.30 10.05 22.27 0.22 -4.08 16 24 C -0.13 -4.93 10.05 22.27 0.22 -4.71 16 25 C -0.10 -4.62 8.33 22.27 0.19 -4.43 16 26 C 0.08 2.96 5.72 86.35 0.49 3.46 16 27 C 0.05 1.43 6.99 72.08 0.50 1.94 16 28 O -0.38 -10.70 9.92 -148.98 -1.48 -12.18 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.60 8.14 -2.38 -0.02 1.59 16 36 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.09 2.96 7.08 -2.39 -0.02 2.94 16 38 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 39 H 0.12 4.27 7.95 -2.91 -0.02 4.25 16 40 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 42 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 43 H 0.09 4.37 7.88 -2.91 -0.02 4.34 16 44 H 0.10 4.00 5.11 -2.39 -0.01 3.99 16 45 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -65.70 371.16 3.76 -61.94 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.84 Total: 32.69 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.82 Total: -16.96 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.16 Total: -78.70 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.52 Total: -40.85 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.78 Total: 41.88 kcal Total: -65.70 3.76 -61.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362487584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.745 kcal (2) G-P(sol) polarization free energy of solvation -65.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds