Wall clock time and date at job start Tue Mar 31 2020 11:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46903 * 2 1 4 4 C 1.53001 * 109.47136 * 240.00312 * 2 1 3 5 5 C 1.50701 * 109.47587 * 59.99903 * 4 2 1 6 6 H 1.08008 * 119.99717 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00363 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00118 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99837 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47125 * 89.99823 * 9 7 5 11 11 H 1.48500 * 109.47285 * 209.99959 * 9 7 5 12 12 H 1.48502 * 109.47284 * 329.99924 * 9 7 5 13 13 C 1.52993 * 109.47220 * 120.00010 * 2 1 3 14 14 N 1.46905 * 109.47061 * 300.00033 * 13 2 1 15 15 C 1.46901 * 111.00001 * 179.97438 * 14 13 2 16 16 H 1.09000 * 110.34226 * 35.67265 * 15 14 13 17 17 C 1.54344 * 110.30439 * 157.79854 * 15 14 13 18 18 C 1.54345 * 102.39100 * 145.27004 * 17 15 14 19 19 H 1.09003 * 110.29949 * 92.57397 * 18 17 15 20 20 C 1.50704 * 110.30356 * 214.72705 * 18 17 15 21 21 O 1.20826 * 119.99729 * 357.20382 * 20 18 17 22 22 O 1.34223 * 119.99759 * 177.19898 * 20 18 17 23 23 C 1.51369 * 105.16929 * 333.65387 * 18 17 15 24 24 C 1.38495 * 130.38809 * 197.21772 * 23 18 17 25 25 C 1.38104 * 120.21851 * 179.97438 * 24 23 18 26 26 C 1.38260 * 119.92849 * 359.71693 * 25 24 23 27 27 C 1.38101 * 119.93601 * 0.54856 * 26 25 24 28 28 C 1.38216 * 109.76124 * 17.19234 * 23 18 17 29 29 H 1.08998 * 109.47269 * 299.99949 * 1 2 3 30 30 H 1.09006 * 109.47357 * 60.00059 * 1 2 3 31 31 H 1.09005 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47489 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47573 * 299.99985 * 3 2 1 34 34 H 1.08998 * 109.47117 * 59.99957 * 3 2 1 35 35 H 1.08997 * 109.47167 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.47073 * 299.99764 * 4 2 1 37 37 H 0.96993 * 119.99964 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46843 * 180.02562 * 13 2 1 39 39 H 1.08995 * 109.47044 * 60.00203 * 13 2 1 40 40 H 1.00900 * 110.99778 * 303.95378 * 14 13 2 41 41 H 1.09005 * 110.82056 * 27.04860 * 17 15 14 42 42 H 1.09004 * 110.99431 * 263.57702 * 17 15 14 43 43 H 0.96701 * 117.00071 * 180.02562 * 22 20 18 44 44 H 1.08004 * 119.89478 * 359.95006 * 24 23 18 45 45 H 1.07998 * 120.03781 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.02623 * 180.28641 * 26 25 24 47 47 H 1.08002 * 119.89454 * 179.74585 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3807 7 6 1.8703 -0.4821 -3.7320 8 7 1.4315 0.1376 -4.8058 9 14 2.9443 -2.0009 -3.9034 10 1 2.0858 -3.2117 -3.9482 11 1 3.7358 -1.9086 -5.1565 12 1 3.8651 -2.0897 -2.7418 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6703 16 1 3.0275 -1.0870 3.5245 17 6 1.9958 0.2876 4.8601 18 6 1.6158 -0.6312 6.0407 19 1 2.5135 -1.0058 6.5325 20 6 0.7508 0.1130 7.0251 21 8 0.4982 1.2808 6.8452 22 8 0.2609 -0.5216 8.1017 23 6 0.8413 -1.7740 5.4198 24 6 -0.0009 -2.7074 6.0007 25 6 -0.6083 -3.6742 5.2237 26 6 -0.3800 -3.7074 3.8605 27 6 0.4638 -2.7809 3.2803 28 6 1.0741 -1.8108 4.0579 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9565 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 -0.7208 -1.2495 36 1 1.6767 -1.7488 -1.2493 37 1 1.6659 -0.1938 -5.6868 38 1 3.1300 -0.7208 1.2493 39 1 1.6767 -1.7488 1.2491 40 1 1.8197 0.9436 2.4401 41 1 1.2397 1.0584 4.7101 42 1 2.9771 0.7352 5.0177 43 1 -0.2891 -0.0028 8.7045 44 1 -0.1831 -2.6795 7.0649 45 1 -1.2643 -4.4009 5.6798 46 1 -0.8579 -4.4599 3.2507 47 1 0.6449 -2.8100 2.2159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588758611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:55 Heat of formation + Delta-G solvation = -74.704951 kcal Electronic energy + Delta-G solvation = -26931.408566 eV Core-core repulsion = 23271.249397 eV Total energy + Delta-G solvation = -3660.159170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20766 -39.69985 -37.70711 -36.61184 -35.84592 -33.61432 -32.13535 -30.73208 -29.23516 -28.06224 -27.22813 -26.36266 -24.84982 -23.14282 -22.76554 -22.00894 -20.68571 -20.43290 -18.34765 -17.80183 -17.20497 -17.01432 -16.76942 -15.76934 -15.51768 -15.21796 -15.11268 -14.48168 -14.10525 -14.08949 -13.66184 -13.41798 -13.22431 -13.11319 -12.84313 -12.63142 -12.35306 -12.08333 -11.99372 -11.87385 -11.66468 -11.48051 -11.35293 -11.06900 -11.04464 -10.94864 -10.84895 -10.78315 -10.49632 -10.29531 -9.77994 -9.68832 -9.29313 -8.89543 -8.88799 -8.75003 -8.49537 -8.22025 -5.99583 -3.95765 1.16441 1.33170 1.92372 2.71307 3.31907 3.39725 3.42540 3.64870 4.03302 4.14189 4.39958 4.48254 4.68436 4.80210 4.85785 4.97085 5.05233 5.14661 5.22645 5.33255 5.43311 5.46893 5.54948 5.66619 5.68160 5.78232 5.85322 5.89212 6.03208 6.15340 6.18329 6.23700 6.32114 6.39166 6.48698 6.54675 6.60748 6.69873 6.80495 6.89076 7.07862 7.12898 7.19178 7.26834 7.33181 7.45087 7.57512 7.58960 7.85653 8.60306 9.06607 9.63470 11.13603 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003132 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.463093 B = 8938.783537 C = 9732.762446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.048 4.048 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.064 3.936 14 N -0.674 5.674 15 C 0.121 3.879 16 H 0.063 0.937 17 C -0.111 4.111 18 C -0.034 4.034 19 H 0.122 0.878 20 C 0.490 3.510 21 O -0.509 6.509 22 O -0.514 6.514 23 C -0.107 4.107 24 C -0.098 4.098 25 C -0.126 4.126 26 C -0.112 4.112 27 C -0.093 4.093 28 C -0.059 4.059 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.012 0.988 36 H 0.010 0.990 37 H 0.261 0.739 38 H 0.025 0.975 39 H 0.068 0.932 40 H 0.345 0.655 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.409 0.591 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 -5.097 26.044 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.065 4.065 14 N -0.306 5.306 15 C 0.011 3.989 16 H 0.081 0.919 17 C -0.148 4.148 18 C -0.053 4.053 19 H 0.140 0.860 20 C 0.332 3.668 21 O -0.396 6.396 22 O -0.326 6.326 23 C -0.107 4.107 24 C -0.116 4.116 25 C -0.144 4.144 26 C -0.130 4.130 27 C -0.111 4.111 28 C -0.059 4.059 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.166 0.834 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.268 0.732 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.489 -5.305 25.517 26.067 hybrid contribution 1.123 -0.356 0.123 1.184 sum 0.633 -5.661 25.640 26.265 Atomic orbital electron populations 1.21613 0.94473 1.00617 1.00774 1.20418 0.96226 0.95082 0.93148 1.21785 0.99585 0.96427 1.01048 1.19623 0.95786 0.95410 0.93336 1.21138 1.31401 1.13235 0.88671 0.90416 1.25017 0.95815 0.96728 0.96037 1.69908 1.46148 1.40648 0.97828 0.86853 0.81292 0.84080 0.77454 1.20451 1.21598 1.19199 1.22305 0.96307 0.98322 0.89553 1.60612 1.63405 1.06364 1.00250 1.21029 0.95266 0.91951 0.90699 0.91900 1.22585 1.03729 0.97607 0.90929 1.20494 0.97049 0.94113 0.93682 0.86020 1.23261 0.77870 0.85600 0.80099 1.90734 1.56698 1.17774 1.74401 1.84535 1.64332 1.48133 1.35620 1.19926 0.99694 0.96748 0.94361 1.20662 0.96544 0.94268 1.00106 1.21020 1.00494 0.98848 0.94026 1.21162 0.98052 0.98770 0.95018 1.20818 0.96194 0.93816 1.00241 1.20403 0.97104 0.95493 0.92936 0.93600 0.92159 0.94310 0.94122 0.91138 0.94497 0.96964 0.97219 0.92897 0.95681 0.91345 0.83379 0.87887 0.89591 0.73243 0.85638 0.85922 0.85771 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.06 37.16 0.30 -1.94 16 2 C -0.05 -0.91 0.60 -154.51 -0.09 -1.00 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.00 -0.09 3.11 -27.88 -0.09 -0.17 16 5 C -0.51 -13.86 8.20 -34.44 -0.28 -14.14 16 6 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.71 13.96 55.43 0.77 -26.94 16 9 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.06 0.99 4.42 -3.82 -0.02 0.97 16 14 N -0.67 -9.04 5.49 -106.85 -0.59 -9.62 16 15 C 0.12 1.38 3.19 -67.83 -0.22 1.17 16 16 H 0.06 0.69 7.86 -51.93 -0.41 0.29 16 17 C -0.11 -1.10 5.73 -25.32 -0.15 -1.25 16 18 C -0.03 -0.32 3.37 -91.89 -0.31 -0.63 16 19 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 20 C 0.49 4.85 7.59 36.01 0.27 5.13 16 21 O -0.51 -6.59 16.27 -18.75 -0.31 -6.90 16 22 O -0.51 -3.64 12.08 -39.24 -0.47 -4.11 16 23 C -0.11 -1.16 5.60 -104.21 -0.58 -1.74 16 24 C -0.10 -0.99 9.59 -39.54 -0.38 -1.36 16 25 C -0.13 -1.24 10.05 -39.62 -0.40 -1.64 16 26 C -0.11 -1.22 10.05 -39.62 -0.40 -1.62 16 27 C -0.09 -1.16 9.68 -39.54 -0.38 -1.55 16 28 C -0.06 -0.71 5.78 -104.21 -0.60 -1.32 16 29 H 0.04 0.80 7.60 -51.93 -0.39 0.41 16 30 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.45 6.62 -51.92 -0.34 1.11 16 34 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 35 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 36 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 39 H 0.07 1.07 5.64 -51.93 -0.29 0.78 16 40 H 0.35 4.43 6.48 -39.29 -0.25 4.18 16 41 H 0.10 1.22 7.01 -51.93 -0.36 0.85 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.41 1.25 9.10 45.56 0.41 1.67 16 44 H 0.13 1.07 7.02 -52.48 -0.37 0.70 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 47 H 0.13 1.68 5.87 -52.49 -0.31 1.37 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -32.66 366.55 -9.07 -41.73 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.21 Total: 4.75 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -3.12 Total: -21.39 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.19 Total: -36.56 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.78 Total: -11.01 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.66 -9.07 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588758611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.975 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds