Wall clock time and date at job start Tue Mar 31 2020 11:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46903 * 2 1 4 4 C 1.53001 * 109.47136 * 240.00312 * 2 1 3 5 5 C 1.50701 * 109.47587 * 59.99903 * 4 2 1 6 6 H 1.08008 * 119.99717 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00363 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00118 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99837 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47125 * 89.99823 * 9 7 5 11 11 H 1.48500 * 109.47285 * 209.99959 * 9 7 5 12 12 H 1.48502 * 109.47284 * 329.99924 * 9 7 5 13 13 C 1.52993 * 109.47220 * 120.00010 * 2 1 3 14 14 N 1.46905 * 109.47061 * 300.00033 * 13 2 1 15 15 C 1.46901 * 111.00001 * 179.97438 * 14 13 2 16 16 H 1.09000 * 110.34226 * 35.67265 * 15 14 13 17 17 C 1.54344 * 110.30439 * 157.79854 * 15 14 13 18 18 C 1.54345 * 102.39100 * 145.27004 * 17 15 14 19 19 H 1.09003 * 110.29949 * 92.57397 * 18 17 15 20 20 C 1.50704 * 110.30356 * 214.72705 * 18 17 15 21 21 O 1.20826 * 119.99729 * 357.20382 * 20 18 17 22 22 O 1.34223 * 119.99759 * 177.19898 * 20 18 17 23 23 C 1.51369 * 105.16929 * 333.65387 * 18 17 15 24 24 C 1.38495 * 130.38809 * 197.21772 * 23 18 17 25 25 C 1.38104 * 120.21851 * 179.97438 * 24 23 18 26 26 C 1.38260 * 119.92849 * 359.71693 * 25 24 23 27 27 C 1.38101 * 119.93601 * 0.54856 * 26 25 24 28 28 C 1.38216 * 109.76124 * 17.19234 * 23 18 17 29 29 H 1.08998 * 109.47269 * 299.99949 * 1 2 3 30 30 H 1.09006 * 109.47357 * 60.00059 * 1 2 3 31 31 H 1.09005 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47489 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47573 * 299.99985 * 3 2 1 34 34 H 1.08998 * 109.47117 * 59.99957 * 3 2 1 35 35 H 1.08997 * 109.47167 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.47073 * 299.99764 * 4 2 1 37 37 H 0.96993 * 119.99964 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46843 * 180.02562 * 13 2 1 39 39 H 1.08995 * 109.47044 * 60.00203 * 13 2 1 40 40 H 1.00900 * 110.99778 * 303.95378 * 14 13 2 41 41 H 1.09005 * 110.82056 * 27.04860 * 17 15 14 42 42 H 1.09004 * 110.99431 * 263.57702 * 17 15 14 43 43 H 0.96701 * 117.00071 * 180.02562 * 22 20 18 44 44 H 1.08004 * 119.89478 * 359.95006 * 24 23 18 45 45 H 1.07998 * 120.03781 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.02623 * 180.28641 * 26 25 24 47 47 H 1.08002 * 119.89454 * 179.74585 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3807 7 6 1.8703 -0.4821 -3.7320 8 7 1.4315 0.1376 -4.8058 9 14 2.9443 -2.0009 -3.9034 10 1 2.0858 -3.2117 -3.9482 11 1 3.7358 -1.9086 -5.1565 12 1 3.8651 -2.0897 -2.7418 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6703 16 1 3.0275 -1.0870 3.5245 17 6 1.9958 0.2876 4.8601 18 6 1.6158 -0.6312 6.0407 19 1 2.5135 -1.0058 6.5325 20 6 0.7508 0.1130 7.0251 21 8 0.4982 1.2808 6.8452 22 8 0.2609 -0.5216 8.1017 23 6 0.8413 -1.7740 5.4198 24 6 -0.0009 -2.7074 6.0007 25 6 -0.6083 -3.6742 5.2237 26 6 -0.3800 -3.7074 3.8605 27 6 0.4638 -2.7809 3.2803 28 6 1.0741 -1.8108 4.0579 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9565 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 -0.7208 -1.2495 36 1 1.6767 -1.7488 -1.2493 37 1 1.6659 -0.1938 -5.6868 38 1 3.1300 -0.7208 1.2493 39 1 1.6767 -1.7488 1.2491 40 1 1.8197 0.9436 2.4401 41 1 1.2397 1.0584 4.7101 42 1 2.9771 0.7352 5.0177 43 1 -0.2891 -0.0028 8.7045 44 1 -0.1831 -2.6795 7.0649 45 1 -1.2643 -4.4009 5.6798 46 1 -0.8579 -4.4599 3.2507 47 1 0.6449 -2.8100 2.2159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588758611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:55 Heat of formation + Delta-G solvation = -95.064097 kcal Electronic energy + Delta-G solvation = -26932.291405 eV Core-core repulsion = 23271.249397 eV Total energy + Delta-G solvation = -3661.042009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97185 -40.49071 -39.05948 -37.36001 -36.76151 -34.98411 -33.92442 -31.66915 -30.03357 -29.69114 -28.42472 -27.91171 -26.21346 -24.08655 -23.68410 -23.49223 -21.52101 -21.22596 -19.37230 -19.03711 -18.85953 -17.94456 -17.78533 -16.58844 -16.55991 -16.34085 -15.99132 -15.89661 -15.52659 -15.32647 -15.01648 -14.45982 -14.34469 -14.13404 -14.01636 -13.99271 -13.65304 -13.51754 -12.98267 -12.82745 -12.71615 -12.61531 -12.51959 -12.50104 -12.25112 -12.21891 -12.15610 -12.05678 -11.81973 -11.67526 -11.53898 -11.33823 -10.97577 -10.77623 -10.69449 -9.69884 -9.57181 -9.25670 -8.21080 -6.21413 0.37534 0.51770 1.19522 1.36310 1.37628 1.48671 2.09411 2.39943 2.83383 3.14053 3.21066 3.38952 3.48369 3.88628 4.03988 4.11437 4.13125 4.19793 4.22637 4.29653 4.35435 4.44564 4.51318 4.69752 4.70963 4.76419 4.82380 4.90215 4.96302 5.01412 5.06285 5.06511 5.12585 5.19215 5.25450 5.38038 5.45575 5.52710 5.54129 5.60454 5.62439 5.66569 5.71373 5.76199 5.83159 6.09856 6.13757 6.42670 6.53205 6.86204 6.98800 7.41055 8.95346 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003132 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.463093 B = 8938.783537 C = 9732.762446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.047 4.047 3 C -0.125 4.125 4 C -0.002 4.002 5 C -0.503 4.503 6 H 0.043 0.957 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.247 1.247 13 C 0.078 3.922 14 N -0.678 5.678 15 C 0.122 3.878 16 H 0.072 0.928 17 C -0.106 4.106 18 C -0.032 4.032 19 H 0.150 0.850 20 C 0.496 3.504 21 O -0.545 6.545 22 O -0.506 6.506 23 C -0.110 4.110 24 C -0.101 4.101 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.114 4.114 28 C -0.079 4.079 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.014 0.986 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.032 0.968 39 H 0.068 0.932 40 H 0.349 0.651 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.427 0.573 44 H 0.143 0.857 45 H 0.148 0.852 46 H 0.136 0.864 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -6.719 29.252 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.048 4.048 3 C -0.182 4.182 4 C -0.040 4.040 5 C -0.541 4.541 6 H 0.061 0.939 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.766 3.234 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.171 1.171 13 C -0.051 4.051 14 N -0.311 5.311 15 C 0.013 3.987 16 H 0.090 0.910 17 C -0.143 4.143 18 C -0.051 4.051 19 H 0.168 0.832 20 C 0.339 3.661 21 O -0.436 6.436 22 O -0.319 6.319 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.132 4.132 28 C -0.080 4.080 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.170 0.830 41 H 0.101 0.899 42 H 0.126 0.874 43 H 0.289 0.711 44 H 0.161 0.839 45 H 0.166 0.834 46 H 0.154 0.846 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.562 -6.938 28.774 29.604 hybrid contribution 0.677 0.180 -0.788 1.055 sum 1.239 -6.758 27.985 28.816 Atomic orbital electron populations 1.21490 0.94932 1.00179 0.99817 1.20342 0.95783 0.95482 0.93171 1.21696 0.99937 0.95856 1.00703 1.19583 0.95687 0.95313 0.93367 1.21435 1.30004 1.12111 0.90540 0.93907 1.25933 0.97631 1.00243 0.95745 1.70068 1.48366 1.42911 0.98459 0.85793 0.79705 0.79965 0.77967 1.19650 1.21529 1.17102 1.22015 0.96463 0.97856 0.88762 1.60518 1.63746 1.06552 1.00302 1.21089 0.95488 0.92077 0.90085 0.91020 1.22535 1.04372 0.96866 0.90555 1.20553 0.97830 0.93263 0.93476 0.83231 1.23318 0.77344 0.84997 0.80427 1.90732 1.58097 1.19354 1.75384 1.84485 1.64257 1.48047 1.35136 1.20123 0.99766 0.97224 0.93980 1.20939 0.95977 0.93887 1.01062 1.21346 1.00310 0.99111 0.93568 1.21381 0.97889 0.98798 0.95914 1.20866 0.97545 0.95031 0.99800 1.20546 0.97846 0.95845 0.93729 0.91959 0.95509 0.94465 0.93411 0.94677 0.91618 0.96725 0.97073 0.92926 0.94996 0.91404 0.82983 0.89873 0.87353 0.71114 0.83889 0.83441 0.84616 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.12 8.06 71.98 0.58 -3.54 16 2 C -0.05 -1.76 0.60 -52.18 -0.03 -1.79 16 3 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 4 C 0.00 -0.08 3.11 29.85 0.09 0.02 16 5 C -0.50 -28.33 8.20 25.60 0.21 -28.12 16 6 H 0.04 2.66 5.92 -2.91 -0.02 2.64 16 7 C 0.00 0.00 5.47 84.65 0.46 0.46 16 8 N -0.96 -60.52 13.96 21.45 0.30 -60.22 16 9 Si 0.94 44.69 27.47 68.60 1.88 46.57 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 13 C 0.08 2.30 4.42 86.30 0.38 2.69 16 14 N -0.68 -17.03 5.49 -491.97 -2.70 -19.73 16 15 C 0.12 2.54 3.19 44.84 0.14 2.69 16 16 H 0.07 1.39 7.86 -2.39 -0.02 1.37 16 17 C -0.11 -1.85 5.73 31.51 0.18 -1.67 16 18 C -0.03 -0.51 3.37 -11.62 -0.04 -0.55 16 19 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 20 C 0.50 8.60 7.59 71.24 0.54 9.14 16 21 O -0.55 -13.29 16.27 21.96 0.36 -12.93 16 22 O -0.51 -5.58 12.08 -51.35 -0.62 -6.20 16 23 C -0.11 -2.12 5.60 -19.60 -0.11 -2.23 16 24 C -0.10 -1.74 9.59 22.30 0.21 -1.53 16 25 C -0.13 -2.15 10.05 22.24 0.22 -1.92 16 26 C -0.12 -2.47 10.05 22.24 0.22 -2.25 16 27 C -0.11 -2.75 9.68 22.30 0.22 -2.54 16 28 C -0.08 -1.79 5.78 -19.60 -0.11 -1.90 16 29 H 0.06 2.16 7.60 -2.39 -0.02 2.15 16 30 H 0.03 1.18 6.62 -2.38 -0.02 1.16 16 31 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.48 6.62 -2.38 -0.02 1.47 16 34 H 0.07 1.94 6.57 -2.39 -0.02 1.92 16 35 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 36 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 37 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 39 H 0.07 2.04 5.64 -2.39 -0.01 2.03 16 40 H 0.35 8.25 6.48 -89.69 -0.58 7.67 16 41 H 0.08 1.84 7.01 -2.38 -0.02 1.82 16 42 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.43 1.37 9.10 -74.06 -0.67 0.70 16 44 H 0.14 1.91 7.02 -2.91 -0.02 1.89 16 45 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 47 H 0.11 2.96 5.87 -2.91 -0.02 2.94 16 Total: -1.00 -72.59 366.55 2.66 -69.93 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.31 Total: 19.50 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 3.74 Total: -36.93 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -2.40 Total: -79.95 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.26 Total: -19.13 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -72.59 2.66 -69.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588758611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.131 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds