Wall clock time and date at job start Tue Mar 31 2020 11:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47245 * 2 1 4 4 C 1.52999 * 109.47245 * 239.99506 * 2 1 3 5 5 C 1.50697 * 109.46964 * 60.00557 * 4 2 1 6 6 H 1.07996 * 120.00089 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00007 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00136 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47184 * 90.00082 * 9 7 5 11 11 H 1.48499 * 109.47299 * 209.99722 * 9 7 5 12 12 H 1.48499 * 109.47265 * 329.99958 * 9 7 5 13 13 C 1.53005 * 109.46932 * 119.99714 * 2 1 3 14 14 N 1.46903 * 109.47023 * 300.00107 * 13 2 1 15 15 C 1.46900 * 110.99870 * 179.97438 * 14 13 2 16 16 H 1.08995 * 110.27162 * 327.08005 * 15 14 13 17 17 C 1.54343 * 110.30262 * 204.99958 * 15 14 13 18 18 C 1.54347 * 102.39445 * 267.42775 * 17 15 14 19 19 H 1.08997 * 110.30742 * 92.57594 * 18 17 15 20 20 C 1.50701 * 110.30431 * 214.73300 * 18 17 15 21 21 O 1.20819 * 120.00120 * 359.97438 * 20 18 17 22 22 O 1.34236 * 119.99599 * 180.02562 * 20 18 17 23 23 C 1.51373 * 105.16882 * 333.65463 * 18 17 15 24 24 C 1.38501 * 130.39098 * 197.19189 * 23 18 17 25 25 C 1.38105 * 120.21384 * 179.97438 * 24 23 18 26 26 C 1.38250 * 119.93595 * 359.97438 * 25 24 23 27 27 C 1.38102 * 119.93283 * 359.97438 * 26 25 24 28 28 C 1.38217 * 109.75754 * 17.18422 * 23 18 17 29 29 H 1.08996 * 109.47264 * 300.00347 * 1 2 3 30 30 H 1.08999 * 109.46977 * 60.00673 * 1 2 3 31 31 H 1.09003 * 109.47398 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47534 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47105 * 299.99617 * 3 2 1 34 34 H 1.08996 * 109.47273 * 59.99658 * 3 2 1 35 35 H 1.09009 * 109.46833 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47080 * 300.00094 * 4 2 1 37 37 H 0.97000 * 120.00387 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47044 * 180.02562 * 13 2 1 39 39 H 1.08998 * 109.47331 * 59.99944 * 13 2 1 40 40 H 1.00901 * 110.99787 * 56.04332 * 14 13 2 41 41 H 1.09000 * 110.82231 * 149.20433 * 17 15 14 42 42 H 1.09002 * 110.82550 * 25.65003 * 17 15 14 43 43 H 0.96701 * 116.99224 * 180.02562 * 22 20 18 44 44 H 1.07998 * 119.89215 * 359.97438 * 24 23 18 45 45 H 1.07998 * 120.02842 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.03204 * 179.97438 * 26 25 24 47 47 H 1.08008 * 119.89228 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0110 -2.4796 6 1 0.9166 0.8669 -2.3806 7 6 1.8714 -0.4818 -3.7319 8 7 2.6282 -1.5506 -3.8525 9 14 1.2483 0.3983 -5.2572 10 1 2.2258 1.4407 -5.6613 11 1 1.0842 -0.5809 -6.3614 12 1 -0.0604 1.0349 -4.9615 13 6 2.0400 -0.7212 1.2493 14 7 1.5502 -0.0286 2.4487 15 6 2.0207 -0.6951 3.6704 16 1 2.0998 -1.7699 3.5077 17 6 1.0628 -0.4001 4.8442 18 6 1.7051 0.8456 5.4908 19 1 1.2711 1.7544 5.0741 20 6 1.5184 0.8136 6.9859 21 8 0.9310 -0.1075 7.5018 22 8 2.0039 1.8092 7.7443 23 6 3.1758 0.7585 5.1432 24 6 4.2689 1.4029 5.6983 25 6 5.5385 1.1634 5.2104 26 6 5.7199 0.2773 4.1648 27 6 4.6313 -0.3670 3.6107 28 6 3.3571 -0.1267 4.0973 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1301 -0.7217 -1.2489 36 1 1.6767 -1.7490 -1.2491 37 1 2.8626 -1.8820 -4.7335 38 1 3.1299 -0.7208 1.2496 39 1 1.6766 -1.7489 1.2494 40 1 0.5437 0.0415 2.4401 41 1 1.0419 -1.2337 5.5461 42 1 0.0609 -0.1740 4.4793 43 1 1.8599 1.7445 8.6983 44 1 4.1279 2.0950 6.5154 45 1 6.3887 1.6678 5.6452 46 1 6.7120 0.0891 3.7818 47 1 4.7738 -1.0588 2.7936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588758613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:03 Heat of formation + Delta-G solvation = -79.386756 kcal Electronic energy + Delta-G solvation = -26871.625561 eV Core-core repulsion = 23211.263373 eV Total energy + Delta-G solvation = -3660.362188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17337 -39.66023 -37.61849 -36.57098 -35.80559 -33.39747 -32.12072 -30.74844 -29.18518 -27.72887 -26.78967 -26.32149 -24.85008 -23.17893 -22.77609 -22.34555 -20.74311 -20.26435 -18.38190 -17.83682 -17.10897 -16.83289 -16.22762 -15.73127 -15.45650 -15.27151 -14.84256 -14.66276 -14.39708 -13.87069 -13.50421 -13.32508 -13.27104 -12.99478 -12.68022 -12.61422 -12.11818 -12.00318 -11.91298 -11.84856 -11.60969 -11.40955 -11.24682 -11.05902 -10.94371 -10.87367 -10.76381 -10.75429 -10.49788 -10.24349 -10.10824 -9.68678 -9.03781 -8.86202 -8.83401 -8.69041 -8.31444 -8.15325 -5.96104 -3.96152 1.22902 1.35891 1.93993 2.76970 3.33500 3.40148 3.42698 3.68871 4.07030 4.22092 4.45236 4.54213 4.71445 4.86599 4.96892 5.04370 5.12369 5.15173 5.39792 5.39819 5.51251 5.56514 5.64210 5.69514 5.76842 5.79713 5.87623 5.97962 6.06124 6.20101 6.23760 6.33000 6.36810 6.46330 6.51395 6.58359 6.66306 6.78641 6.83574 6.92424 7.18790 7.21290 7.26393 7.36233 7.59982 7.62158 7.70626 7.85533 8.04192 8.48576 9.09239 9.66702 11.15558 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.002953 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.781215 B = 9479.967314 C =10169.211748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.115 4.115 4 C 0.035 3.965 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.070 3.930 14 N -0.674 5.674 15 C 0.120 3.880 16 H 0.060 0.940 17 C -0.109 4.109 18 C -0.032 4.032 19 H 0.127 0.873 20 C 0.489 3.511 21 O -0.514 6.514 22 O -0.513 6.513 23 C -0.093 4.093 24 C -0.100 4.100 25 C -0.124 4.124 26 C -0.112 4.112 27 C -0.097 4.097 28 C -0.058 4.058 29 H 0.033 0.967 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.014 0.986 36 H 0.012 0.988 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.343 0.657 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.408 0.592 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 4.947 22.568 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C -0.172 4.172 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.059 4.059 14 N -0.307 5.307 15 C 0.010 3.990 16 H 0.078 0.922 17 C -0.147 4.147 18 C -0.051 4.051 19 H 0.144 0.856 20 C 0.332 3.668 21 O -0.402 6.402 22 O -0.325 6.325 23 C -0.094 4.094 24 C -0.118 4.118 25 C -0.142 4.142 26 C -0.130 4.130 27 C -0.115 4.115 28 C -0.059 4.059 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.164 0.836 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.266 0.734 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.764 5.059 22.143 22.782 hybrid contribution -0.807 -0.366 -0.401 0.972 sum 0.957 4.693 21.742 22.263 Atomic orbital electron populations 1.21772 0.96076 1.00379 1.00420 1.20626 0.94700 0.96144 0.94339 1.21581 0.99754 0.95761 1.00092 1.19113 0.96075 0.94942 0.90163 1.21234 1.30745 1.11877 0.90611 0.92303 1.25013 0.95426 0.95102 0.99045 1.69966 1.37312 1.23213 1.23279 0.86671 0.79237 0.79425 0.83121 1.20788 1.21410 1.19947 1.22195 0.99961 0.94601 0.89099 1.60552 1.16203 1.53647 1.00310 1.20940 0.90791 0.96692 0.90595 0.92198 1.22577 0.98735 0.96470 0.96891 1.20515 0.94860 1.02959 0.86754 0.85554 1.23423 0.73983 0.78631 0.90780 1.90708 1.39544 1.35158 1.74812 1.84566 1.74355 1.48538 1.25000 1.19921 0.92430 0.98736 0.98275 1.20670 0.91527 0.99414 1.00183 1.21003 0.96678 0.99009 0.97497 1.21099 0.98733 0.96756 0.96443 1.20700 0.91251 1.00103 0.99488 1.20365 0.94188 0.96407 0.94943 0.94823 0.91711 0.94068 0.94244 0.92776 0.93923 0.96736 0.96950 0.93177 0.91494 0.95656 0.83640 0.88684 0.89265 0.73369 0.85712 0.85926 0.85803 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 7.89 37.16 0.29 -2.02 16 2 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 3 C -0.11 -2.19 8.06 37.16 0.30 -1.89 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.72 7.65 -34.44 -0.26 -13.98 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.07 1.15 4.49 -3.82 -0.02 1.14 16 14 N -0.67 -9.11 5.55 -106.85 -0.59 -9.70 16 15 C 0.12 1.44 3.20 -67.83 -0.22 1.23 16 16 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 17 C -0.11 -1.13 6.00 -25.32 -0.15 -1.28 16 18 C -0.03 -0.33 3.37 -91.89 -0.31 -0.64 16 19 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 20 C 0.49 4.97 7.55 36.01 0.27 5.25 16 21 O -0.51 -6.56 16.25 -18.74 -0.30 -6.86 16 22 O -0.51 -3.83 12.26 -39.27 -0.48 -4.31 16 23 C -0.09 -1.08 5.60 -104.20 -0.58 -1.66 16 24 C -0.10 -1.07 9.63 -39.53 -0.38 -1.45 16 25 C -0.12 -1.27 10.05 -39.63 -0.40 -1.67 16 26 C -0.11 -1.24 10.05 -39.63 -0.40 -1.64 16 27 C -0.10 -1.22 9.76 -39.54 -0.39 -1.61 16 28 C -0.06 -0.74 5.74 -104.21 -0.60 -1.34 16 29 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 30 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 1.11 6.62 -51.93 -0.34 0.76 16 34 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 35 H 0.01 0.39 8.14 -51.92 -0.42 -0.04 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.07 1.16 7.44 -51.93 -0.39 0.77 16 39 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 40 H 0.34 4.30 6.08 -39.29 -0.24 4.06 16 41 H 0.09 1.03 7.02 -51.93 -0.36 0.67 16 42 H 0.09 0.80 7.55 -51.93 -0.39 0.41 16 43 H 0.41 1.32 9.10 45.56 0.41 1.74 16 44 H 0.12 1.14 7.13 -52.49 -0.37 0.77 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 1.51 7.65 -52.48 -0.40 1.11 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -31.99 373.42 -9.56 -41.55 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.38 Total: 3.76 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -3.14 Total: -20.58 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.14 Total: -35.68 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.79 Total: -11.17 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.99 -9.56 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588758613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.834 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds