Wall clock time and date at job start Tue Mar 31 2020 11:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47245 * 2 1 4 4 C 1.52999 * 109.47245 * 239.99506 * 2 1 3 5 5 C 1.50697 * 109.46964 * 60.00557 * 4 2 1 6 6 H 1.07996 * 120.00089 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00007 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00136 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47184 * 90.00082 * 9 7 5 11 11 H 1.48499 * 109.47299 * 209.99722 * 9 7 5 12 12 H 1.48499 * 109.47265 * 329.99958 * 9 7 5 13 13 C 1.53005 * 109.46932 * 119.99714 * 2 1 3 14 14 N 1.46903 * 109.47023 * 300.00107 * 13 2 1 15 15 C 1.46900 * 110.99870 * 179.97438 * 14 13 2 16 16 H 1.08995 * 110.27162 * 327.08005 * 15 14 13 17 17 C 1.54343 * 110.30262 * 204.99958 * 15 14 13 18 18 C 1.54347 * 102.39445 * 267.42775 * 17 15 14 19 19 H 1.08997 * 110.30742 * 92.57594 * 18 17 15 20 20 C 1.50701 * 110.30431 * 214.73300 * 18 17 15 21 21 O 1.20819 * 120.00120 * 359.97438 * 20 18 17 22 22 O 1.34236 * 119.99599 * 180.02562 * 20 18 17 23 23 C 1.51373 * 105.16882 * 333.65463 * 18 17 15 24 24 C 1.38501 * 130.39098 * 197.19189 * 23 18 17 25 25 C 1.38105 * 120.21384 * 179.97438 * 24 23 18 26 26 C 1.38250 * 119.93595 * 359.97438 * 25 24 23 27 27 C 1.38102 * 119.93283 * 359.97438 * 26 25 24 28 28 C 1.38217 * 109.75754 * 17.18422 * 23 18 17 29 29 H 1.08996 * 109.47264 * 300.00347 * 1 2 3 30 30 H 1.08999 * 109.46977 * 60.00673 * 1 2 3 31 31 H 1.09003 * 109.47398 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47534 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47105 * 299.99617 * 3 2 1 34 34 H 1.08996 * 109.47273 * 59.99658 * 3 2 1 35 35 H 1.09009 * 109.46833 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47080 * 300.00094 * 4 2 1 37 37 H 0.97000 * 120.00387 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47044 * 180.02562 * 13 2 1 39 39 H 1.08998 * 109.47331 * 59.99944 * 13 2 1 40 40 H 1.00901 * 110.99787 * 56.04332 * 14 13 2 41 41 H 1.09000 * 110.82231 * 149.20433 * 17 15 14 42 42 H 1.09002 * 110.82550 * 25.65003 * 17 15 14 43 43 H 0.96701 * 116.99224 * 180.02562 * 22 20 18 44 44 H 1.07998 * 119.89215 * 359.97438 * 24 23 18 45 45 H 1.07998 * 120.02842 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.03204 * 179.97438 * 26 25 24 47 47 H 1.08008 * 119.89228 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0110 -2.4796 6 1 0.9166 0.8669 -2.3806 7 6 1.8714 -0.4818 -3.7319 8 7 2.6282 -1.5506 -3.8525 9 14 1.2483 0.3983 -5.2572 10 1 2.2258 1.4407 -5.6613 11 1 1.0842 -0.5809 -6.3614 12 1 -0.0604 1.0349 -4.9615 13 6 2.0400 -0.7212 1.2493 14 7 1.5502 -0.0286 2.4487 15 6 2.0207 -0.6951 3.6704 16 1 2.0998 -1.7699 3.5077 17 6 1.0628 -0.4001 4.8442 18 6 1.7051 0.8456 5.4908 19 1 1.2711 1.7544 5.0741 20 6 1.5184 0.8136 6.9859 21 8 0.9310 -0.1075 7.5018 22 8 2.0039 1.8092 7.7443 23 6 3.1758 0.7585 5.1432 24 6 4.2689 1.4029 5.6983 25 6 5.5385 1.1634 5.2104 26 6 5.7199 0.2773 4.1648 27 6 4.6313 -0.3670 3.6107 28 6 3.3571 -0.1267 4.0973 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1301 -0.7217 -1.2489 36 1 1.6767 -1.7490 -1.2491 37 1 2.8626 -1.8820 -4.7335 38 1 3.1299 -0.7208 1.2496 39 1 1.6766 -1.7489 1.2494 40 1 0.5437 0.0415 2.4401 41 1 1.0419 -1.2337 5.5461 42 1 0.0609 -0.1740 4.4793 43 1 1.8599 1.7445 8.6983 44 1 4.1279 2.0950 6.5154 45 1 6.3887 1.6678 5.6452 46 1 6.7120 0.0891 3.7818 47 1 4.7738 -1.0588 2.7936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588758613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:02 Heat of formation + Delta-G solvation = -98.236962 kcal Electronic energy + Delta-G solvation = -26872.442968 eV Core-core repulsion = 23211.263373 eV Total energy + Delta-G solvation = -3661.179594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98912 -40.49095 -39.01529 -37.37022 -36.79413 -34.91293 -33.76092 -31.74653 -30.02718 -29.16472 -28.31111 -27.85909 -26.34708 -24.31447 -23.85365 -23.61286 -21.60479 -21.11925 -19.48749 -19.05618 -18.31955 -17.90481 -17.67656 -16.66814 -16.61865 -16.34465 -16.13722 -15.74402 -15.62265 -15.34420 -14.67080 -14.55357 -14.20177 -14.10378 -14.04333 -13.85793 -13.59329 -13.50807 -12.91099 -12.78412 -12.73140 -12.61992 -12.51987 -12.48218 -12.26051 -12.21327 -12.18773 -12.06117 -11.93965 -11.75437 -11.57660 -11.35841 -10.84095 -10.71017 -10.49534 -9.73830 -9.57826 -9.29345 -8.13120 -6.19956 0.37926 0.48526 1.17828 1.41549 1.41846 1.52386 2.10735 2.44383 2.81116 3.20074 3.20953 3.38947 3.47056 3.86653 4.05280 4.11869 4.19394 4.23823 4.27946 4.31447 4.39709 4.43484 4.55059 4.70325 4.73240 4.80287 4.83767 4.87368 4.96438 4.98822 5.05350 5.11095 5.21343 5.24020 5.24745 5.52861 5.53833 5.56168 5.59958 5.60742 5.63395 5.67422 5.69253 5.89516 5.94314 6.04702 6.09447 6.37892 6.55289 6.95471 6.98892 7.47418 8.99246 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.002953 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.781215 B = 9479.967314 C =10169.211748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.054 4.054 3 C -0.104 4.104 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.085 3.915 14 N -0.666 5.666 15 C 0.121 3.879 16 H 0.052 0.948 17 C -0.102 4.102 18 C -0.031 4.031 19 H 0.141 0.859 20 C 0.498 3.502 21 O -0.544 6.544 22 O -0.506 6.506 23 C -0.098 4.098 24 C -0.104 4.104 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.081 4.081 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.025 0.975 33 H 0.037 0.963 34 H 0.068 0.932 35 H -0.019 1.019 36 H -0.017 1.017 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.351 0.649 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.427 0.573 44 H 0.143 0.857 45 H 0.150 0.850 46 H 0.139 0.861 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 7.105 24.239 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.054 4.054 3 C -0.161 4.161 4 C 0.004 3.996 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.186 1.186 13 C -0.044 4.044 14 N -0.300 5.300 15 C 0.011 3.989 16 H 0.070 0.930 17 C -0.139 4.139 18 C -0.050 4.050 19 H 0.158 0.842 20 C 0.342 3.658 21 O -0.435 6.435 22 O -0.319 6.319 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.081 4.081 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.000 1.000 36 H 0.002 0.998 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.173 0.827 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.289 0.711 44 H 0.161 0.839 45 H 0.168 0.832 46 H 0.157 0.843 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.869 7.246 23.847 24.938 hybrid contribution -0.443 -1.027 -0.835 1.396 sum 0.426 6.219 23.012 23.841 Atomic orbital electron populations 1.21688 0.94435 1.00506 1.01338 1.20481 0.95947 0.95955 0.93025 1.21471 0.98819 0.95345 1.00480 1.18991 0.93904 0.93971 0.92769 1.21626 1.30151 1.11865 0.91435 0.91548 1.25915 0.95752 0.95887 1.02566 1.70111 1.38918 1.24986 1.23988 0.85592 0.79150 0.78214 0.78994 1.20211 1.21319 1.18566 1.21851 0.99079 0.94163 0.89355 1.60452 1.16741 1.53163 0.99644 1.20945 0.91379 0.96131 0.90422 0.92966 1.22513 0.99066 0.96549 0.95817 1.20516 0.94012 1.03273 0.87171 0.84195 1.23286 0.73327 0.78423 0.90805 1.90707 1.41078 1.36388 1.75326 1.84509 1.73531 1.47243 1.26611 1.20123 0.93456 0.98411 0.97907 1.20958 0.91392 0.99369 1.00436 1.21357 0.97596 0.98308 0.96769 1.21351 0.99004 0.96755 0.96755 1.20819 0.92198 1.00838 0.99924 1.20489 0.94204 0.97469 0.95983 0.91030 0.93560 0.94375 0.95600 0.94362 0.91304 1.00030 0.99819 0.93213 0.92870 0.96237 0.82669 0.89291 0.87552 0.71063 0.83897 0.83230 0.84340 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 7.89 71.98 0.57 -3.67 16 2 C -0.05 -2.09 0.60 -52.18 -0.03 -2.12 16 3 C -0.10 -3.91 8.06 71.98 0.58 -3.33 16 4 C 0.04 2.13 4.04 29.85 0.12 2.25 16 5 C -0.51 -28.27 7.65 25.60 0.20 -28.08 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.49 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 9 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 13 C 0.08 2.82 4.49 86.30 0.39 3.21 16 14 N -0.67 -17.13 5.55 -491.97 -2.73 -19.87 16 15 C 0.12 2.83 3.20 44.84 0.14 2.97 16 16 H 0.05 1.30 7.82 -2.39 -0.02 1.28 16 17 C -0.10 -1.93 6.00 31.51 0.19 -1.74 16 18 C -0.03 -0.56 3.37 -11.61 -0.04 -0.60 16 19 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 20 C 0.50 8.95 7.55 71.24 0.54 9.49 16 21 O -0.54 -12.96 16.25 21.98 0.36 -12.60 16 22 O -0.51 -6.00 12.26 -51.47 -0.63 -6.63 16 23 C -0.10 -2.11 5.60 -19.59 -0.11 -2.22 16 24 C -0.10 -1.97 9.63 22.30 0.21 -1.75 16 25 C -0.12 -2.24 10.05 22.24 0.22 -2.02 16 26 C -0.12 -2.57 10.05 22.24 0.22 -2.35 16 27 C -0.12 -3.04 9.76 22.30 0.22 -2.82 16 28 C -0.08 -2.00 5.74 -19.59 -0.11 -2.11 16 29 H 0.07 1.93 6.57 -2.39 -0.02 1.91 16 30 H 0.05 1.77 6.62 -2.39 -0.02 1.75 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 1.53 6.62 -2.39 -0.02 1.52 16 34 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 35 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 36 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.05 1.92 7.44 -2.39 -0.02 1.90 16 39 H 0.02 0.67 8.07 -2.39 -0.02 0.65 16 40 H 0.35 7.90 6.08 -89.69 -0.55 7.36 16 41 H 0.09 1.84 7.02 -2.39 -0.02 1.82 16 42 H 0.11 1.63 7.55 -2.39 -0.02 1.61 16 43 H 0.43 1.46 9.10 -74.06 -0.67 0.78 16 44 H 0.14 2.14 7.13 -2.91 -0.02 2.12 16 45 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 46 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 47 H 0.11 2.94 7.65 -2.91 -0.02 2.92 16 Total: -1.00 -70.41 373.42 2.85 -67.57 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.23 Total: 17.01 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.77 Total: -34.69 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -2.45 Total: -77.11 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.27 Total: -19.23 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.41 2.85 -67.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588758613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.671 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds