Wall clock time and date at job start Tue Mar 31 2020 11:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 C 1.53004 * 109.46880 * 239.99895 * 2 1 3 5 5 C 1.52995 * 109.46663 * 120.00120 * 2 1 3 6 6 N 1.46504 * 109.47291 * 59.99829 * 5 2 1 7 7 C 1.46496 * 120.00044 * 269.99666 * 6 5 2 8 8 C 1.50695 * 109.47051 * 270.00014 * 7 6 5 9 9 H 1.07999 * 120.00639 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99814 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99684 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99938 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47547 * 59.99826 * 12 10 8 14 14 H 1.48497 * 109.47078 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.47144 * 299.99804 * 12 10 8 16 16 C 1.38999 * 119.99581 * 89.99662 * 6 5 2 17 17 C 1.39401 * 120.02891 * 184.95783 * 16 6 5 18 18 N 1.31980 * 120.10238 * 180.02562 * 17 16 6 19 19 C 1.32123 * 120.17721 * 359.97438 * 18 17 16 20 20 C 1.39221 * 120.07044 * 0.03126 * 19 18 17 21 21 C 1.48414 * 120.05431 * 179.97438 * 20 19 18 22 22 N 1.34067 * 126.67666 * 180.02562 * 21 20 19 23 23 N 1.28986 * 107.26256 * 179.97438 * 22 21 20 24 24 N 1.28726 * 108.95332 * 0.02562 * 23 22 21 25 25 H 0.96999 * 125.33849 * 179.97438 * 24 23 22 26 26 N 1.28872 * 109.32072 * 359.72828 * 24 23 22 27 27 N 1.32535 * 120.03413 * 5.00527 * 16 6 5 28 28 H 1.08996 * 109.46759 * 300.00288 * 1 2 3 29 29 H 1.09007 * 109.46504 * 59.99990 * 1 2 3 30 30 H 1.08995 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47109 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47115 * 300.00270 * 3 2 1 33 33 H 1.08997 * 109.46921 * 59.99931 * 3 2 1 34 34 H 1.08999 * 109.47081 * 300.00454 * 4 2 1 35 35 H 1.08997 * 109.46854 * 60.00243 * 4 2 1 36 36 H 1.08996 * 109.46882 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47298 * 299.99869 * 5 2 1 38 38 H 1.09001 * 109.46905 * 179.97438 * 5 2 1 39 39 H 1.08994 * 109.47105 * 30.00395 * 7 6 5 40 40 H 1.09001 * 109.46733 * 149.99882 * 7 6 5 41 41 H 0.97010 * 119.99880 * 180.02562 * 11 10 8 42 42 H 1.07997 * 119.94962 * 359.97438 * 17 16 6 43 43 H 1.08004 * 119.96221 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 7 1.5515 -2.1025 1.2492 7 6 0.2715 -2.4268 1.8836 8 6 0.5023 -2.7748 3.3315 9 1 1.5025 -2.7567 3.7385 10 6 -0.5634 -3.1174 4.1365 11 7 -1.7812 -3.1409 3.6406 12 14 -0.2773 -3.5481 5.9315 13 1 0.3393 -2.3898 6.6264 14 1 -1.5747 -3.8782 6.5742 15 1 0.6309 -4.7197 6.0208 16 6 2.3027 -3.1052 0.6473 17 6 1.7926 -4.3993 0.5554 18 7 2.5049 -5.3526 -0.0153 19 6 3.7036 -5.0849 -0.5024 20 6 4.2201 -3.7951 -0.4145 21 6 5.5669 -3.4949 -0.9612 22 7 6.1901 -2.3080 -0.9481 23 7 7.3354 -2.4707 -1.5186 24 7 7.4498 -3.6998 -1.8837 25 1 8.2182 -4.0815 -2.3361 26 7 6.3853 -4.3447 -1.5494 27 7 3.5050 -2.8321 0.1610 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.6766 -0.2075 2.1392 38 1 3.1299 -0.7217 1.2490 39 1 -0.3946 -1.5665 1.8184 40 1 -0.1818 -3.2767 1.3733 41 1 -2.5310 -3.3816 4.2071 42 1 0.8135 -4.6223 0.9527 43 1 4.2833 -5.8675 -0.9691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589129630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:30 Heat of formation + Delta-G solvation = 177.010514 kcal Electronic energy + Delta-G solvation = -27148.507168 eV Core-core repulsion = 23460.308359 eV Total energy + Delta-G solvation = -3688.198809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.49232 -40.59314 -38.00020 -34.98983 -34.55307 -33.86759 -33.22743 -32.28407 -29.86508 -27.95280 -26.91747 -26.72766 -25.75750 -25.19700 -24.46285 -23.20012 -22.48422 -20.83332 -19.33208 -18.52669 -17.19796 -16.96662 -16.84858 -16.64322 -15.97690 -15.06178 -14.96214 -14.70248 -14.18028 -13.98467 -13.92218 -13.63646 -12.88187 -12.62540 -12.44409 -12.27824 -12.11656 -11.83059 -11.56556 -11.44811 -11.30802 -11.26060 -11.24511 -11.15928 -11.04500 -10.91078 -10.83569 -10.78080 -10.35268 -10.28203 -10.21147 -10.05919 -9.74265 -9.04425 -8.68110 -8.52622 -6.94547 -6.17144 -4.27348 0.69158 1.19809 1.82736 2.11530 2.44018 3.25064 3.29830 3.31051 3.36514 3.74749 4.19856 4.29542 4.35647 4.90556 4.95749 5.06475 5.14265 5.21072 5.23534 5.30456 5.37922 5.57413 5.70501 5.89462 5.91442 5.95842 5.98612 6.12977 6.19925 6.23876 6.26935 6.34566 6.36611 6.53080 6.58210 6.63649 6.76668 6.83916 6.91713 7.11715 7.45455 7.74770 7.96902 8.01843 8.10958 8.18253 8.43385 8.80893 9.40304 10.86253 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.004485 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.100360 B = 6241.830736 C = 7496.088741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.128 4.128 5 C 0.135 3.865 6 N -0.564 5.564 7 C 0.244 3.756 8 C -0.540 4.540 9 H 0.060 0.940 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.381 3.619 17 C 0.021 3.979 18 N -0.406 5.406 19 C -0.008 4.008 20 C 0.190 3.810 21 C 0.237 3.763 22 N -0.238 5.238 23 N -0.058 5.058 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.285 5.285 27 N -0.482 5.482 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.037 0.963 41 H 0.266 0.734 42 H 0.179 0.821 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.959 1.566 -11.048 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C -0.193 4.193 4 C -0.185 4.185 5 C 0.011 3.989 6 N -0.271 5.271 7 C 0.125 3.875 8 C -0.579 4.579 9 H 0.078 0.922 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.139 3.861 17 C -0.152 4.152 18 N -0.118 5.118 19 C -0.170 4.170 20 C 0.046 3.954 21 C -0.044 4.044 22 N -0.111 5.111 23 N -0.054 5.054 24 N -0.076 5.076 25 H 0.328 0.672 26 N -0.138 5.138 27 N -0.207 5.207 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.196 0.804 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.128 2.093 -11.013 16.515 hybrid contribution 0.256 -0.736 0.900 1.190 sum 12.383 1.358 -10.113 16.046 Atomic orbital electron populations 1.21968 0.94495 1.02573 1.00768 1.20954 0.96025 0.95097 0.96345 1.21773 1.00934 0.95325 1.01290 1.21782 1.01411 0.99526 0.95799 1.21451 0.99590 0.81331 0.96561 1.47205 1.21410 1.04301 1.54152 1.19641 0.77997 0.97799 0.92047 1.21478 0.94068 1.47569 0.94764 0.92152 1.24906 0.94880 0.94966 0.98837 1.69901 0.98726 1.47641 1.36578 0.86568 0.77474 0.79088 0.84437 1.20170 1.21116 1.20107 1.19257 0.87729 0.89454 0.89667 1.23608 1.02135 0.88603 1.00846 1.68325 1.04756 1.33483 1.05199 1.22972 0.94541 0.95084 1.04401 1.18295 0.88631 0.91081 0.97371 1.23095 0.95998 0.86008 0.99343 1.76281 0.98610 1.21844 1.14379 1.78973 1.14617 1.00842 1.10958 1.47742 1.15129 1.05782 1.38979 0.67171 1.74899 0.96300 1.24641 1.17948 1.67731 1.05521 1.33654 1.13813 0.92619 0.93806 0.91644 0.92622 0.93051 0.92763 0.93476 0.94178 0.91921 0.90526 0.90271 0.93055 0.94517 0.92390 0.80385 0.82105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.22 37.16 0.27 -1.93 16 2 C -0.08 -1.26 0.84 -154.51 -0.13 -1.39 16 3 C -0.14 -1.76 8.47 37.16 0.31 -1.45 16 4 C -0.13 -2.00 7.19 37.16 0.27 -1.73 16 5 C 0.13 2.36 4.62 -4.04 -0.02 2.34 16 6 N -0.56 -11.03 2.07 -175.09 -0.36 -11.39 16 7 C 0.24 5.46 3.92 -5.20 -0.02 5.44 16 8 C -0.54 -13.67 9.39 -34.44 -0.32 -14.00 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -23.93 13.29 55.43 0.74 -23.19 16 12 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.38 7.36 5.61 -154.81 -0.87 6.49 16 17 C 0.02 0.41 10.42 -17.06 -0.18 0.23 16 18 N -0.41 -7.39 10.48 -12.62 -0.13 -7.52 16 19 C -0.01 -0.13 10.87 -17.06 -0.19 -0.31 16 20 C 0.19 3.20 6.76 -82.79 -0.56 2.64 16 21 C 0.24 3.58 8.05 -156.29 -1.26 2.32 16 22 N -0.24 -3.68 12.53 32.15 0.40 -3.28 16 23 N -0.06 -0.72 13.47 60.35 0.81 0.10 16 24 N -0.23 -2.08 7.90 60.35 0.48 -1.61 16 25 H 0.47 1.72 8.96 -340.37 -3.05 -1.33 16 26 N -0.28 -3.42 12.07 32.17 0.39 -3.04 16 27 N -0.48 -8.84 7.65 -8.78 -0.07 -8.91 16 28 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 29 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 1.14 5.99 -51.93 -0.31 0.83 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.82 6.21 -51.93 -0.32 0.49 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 37 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.08 1.42 7.31 -51.93 -0.38 1.04 16 39 H 0.05 1.19 6.05 -51.93 -0.31 0.88 16 40 H 0.04 0.86 6.00 -51.93 -0.31 0.55 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.18 3.57 6.03 -52.49 -0.32 3.25 16 43 H 0.16 2.18 7.87 -52.48 -0.41 1.77 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -28.78 354.23 -8.53 -37.31 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.32 Total: 0.39 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.79 Total: 0.30 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 2.26 Total: -58.83 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.78 -8.53 -37.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589129630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.323 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds