Wall clock time and date at job start Tue Mar 31 2020 11:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 C 1.53004 * 109.46880 * 239.99895 * 2 1 3 5 5 C 1.52995 * 109.46663 * 120.00120 * 2 1 3 6 6 N 1.46504 * 109.47291 * 59.99829 * 5 2 1 7 7 C 1.46496 * 120.00044 * 269.99666 * 6 5 2 8 8 C 1.50695 * 109.47051 * 270.00014 * 7 6 5 9 9 H 1.07999 * 120.00639 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99814 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99684 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99938 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47547 * 59.99826 * 12 10 8 14 14 H 1.48497 * 109.47078 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.47144 * 299.99804 * 12 10 8 16 16 C 1.38999 * 119.99581 * 89.99662 * 6 5 2 17 17 C 1.39401 * 120.02891 * 184.95783 * 16 6 5 18 18 N 1.31980 * 120.10238 * 180.02562 * 17 16 6 19 19 C 1.32123 * 120.17721 * 359.97438 * 18 17 16 20 20 C 1.39221 * 120.07044 * 0.03126 * 19 18 17 21 21 C 1.48414 * 120.05431 * 179.97438 * 20 19 18 22 22 N 1.34067 * 126.67666 * 180.02562 * 21 20 19 23 23 N 1.28986 * 107.26256 * 179.97438 * 22 21 20 24 24 N 1.28726 * 108.95332 * 0.02562 * 23 22 21 25 25 H 0.96999 * 125.33849 * 179.97438 * 24 23 22 26 26 N 1.28872 * 109.32072 * 359.72828 * 24 23 22 27 27 N 1.32535 * 120.03413 * 5.00527 * 16 6 5 28 28 H 1.08996 * 109.46759 * 300.00288 * 1 2 3 29 29 H 1.09007 * 109.46504 * 59.99990 * 1 2 3 30 30 H 1.08995 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47109 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47115 * 300.00270 * 3 2 1 33 33 H 1.08997 * 109.46921 * 59.99931 * 3 2 1 34 34 H 1.08999 * 109.47081 * 300.00454 * 4 2 1 35 35 H 1.08997 * 109.46854 * 60.00243 * 4 2 1 36 36 H 1.08996 * 109.46882 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47298 * 299.99869 * 5 2 1 38 38 H 1.09001 * 109.46905 * 179.97438 * 5 2 1 39 39 H 1.08994 * 109.47105 * 30.00395 * 7 6 5 40 40 H 1.09001 * 109.46733 * 149.99882 * 7 6 5 41 41 H 0.97010 * 119.99880 * 180.02562 * 11 10 8 42 42 H 1.07997 * 119.94962 * 359.97438 * 17 16 6 43 43 H 1.08004 * 119.96221 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 7 1.5515 -2.1025 1.2492 7 6 0.2715 -2.4268 1.8836 8 6 0.5023 -2.7748 3.3315 9 1 1.5025 -2.7567 3.7385 10 6 -0.5634 -3.1174 4.1365 11 7 -1.7812 -3.1409 3.6406 12 14 -0.2773 -3.5481 5.9315 13 1 0.3393 -2.3898 6.6264 14 1 -1.5747 -3.8782 6.5742 15 1 0.6309 -4.7197 6.0208 16 6 2.3027 -3.1052 0.6473 17 6 1.7926 -4.3993 0.5554 18 7 2.5049 -5.3526 -0.0153 19 6 3.7036 -5.0849 -0.5024 20 6 4.2201 -3.7951 -0.4145 21 6 5.5669 -3.4949 -0.9612 22 7 6.1901 -2.3080 -0.9481 23 7 7.3354 -2.4707 -1.5186 24 7 7.4498 -3.6998 -1.8837 25 1 8.2182 -4.0815 -2.3361 26 7 6.3853 -4.3447 -1.5494 27 7 3.5050 -2.8321 0.1610 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.6766 -0.2075 2.1392 38 1 3.1299 -0.7217 1.2490 39 1 -0.3946 -1.5665 1.8184 40 1 -0.1818 -3.2767 1.3733 41 1 -2.5310 -3.3816 4.2071 42 1 0.8135 -4.6223 0.9527 43 1 4.2833 -5.8675 -0.9691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589129630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:29 Heat of formation + Delta-G solvation = 159.418491 kcal Electronic energy + Delta-G solvation = -27149.270015 eV Core-core repulsion = 23460.308359 eV Total energy + Delta-G solvation = -3688.961657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.50637 -42.02127 -39.38672 -36.41326 -35.74515 -35.06581 -34.82905 -33.79643 -31.25753 -29.63082 -28.08449 -28.05371 -27.25043 -26.42995 -25.63129 -24.85453 -23.74974 -22.28939 -20.34091 -19.81955 -18.66691 -18.35821 -18.19960 -18.17958 -17.40183 -16.60422 -16.43325 -16.27631 -15.57832 -15.26752 -15.08487 -14.97769 -14.42307 -14.24755 -13.90988 -13.47318 -13.33684 -13.23451 -12.97892 -12.93028 -12.64722 -12.62982 -12.50447 -12.43067 -12.40694 -12.36246 -12.32275 -12.21013 -12.01806 -11.69593 -11.55117 -11.48909 -11.39141 -10.58788 -10.47342 -10.05089 -8.54636 -8.08124 -6.32279 -0.55721 0.14717 0.39849 1.21152 1.29829 1.41710 1.43138 1.50262 2.02157 2.39790 2.48928 2.90112 3.04601 3.11741 3.49225 3.65017 3.74046 3.95500 3.95800 4.10148 4.17213 4.29610 4.44475 4.57022 4.60649 4.65473 4.80892 4.84045 4.97576 4.98169 5.04934 5.09479 5.11222 5.22874 5.26400 5.34170 5.39460 5.51682 5.57150 5.61189 5.67418 5.96883 6.09393 6.47314 6.60524 6.79246 6.98587 7.11787 7.38880 8.85977 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.004485 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.100360 B = 6241.830736 C = 7496.088741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.129 4.129 4 C -0.115 4.115 5 C 0.137 3.863 6 N -0.570 5.570 7 C 0.264 3.736 8 C -0.547 4.547 9 H 0.047 0.953 10 C 0.026 3.974 11 N -0.916 5.916 12 Si 0.951 3.049 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.277 1.277 16 C 0.372 3.628 17 C -0.001 4.001 18 N -0.411 5.411 19 C 0.002 3.998 20 C 0.192 3.808 21 C 0.217 3.783 22 N -0.269 5.269 23 N -0.056 5.056 24 N -0.192 5.192 25 H 0.498 0.502 26 N -0.268 5.268 27 N -0.484 5.484 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.024 0.976 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.023 0.977 41 H 0.268 0.732 42 H 0.162 0.838 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.074 1.671 -12.082 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 C -0.187 4.187 4 C -0.173 4.173 5 C 0.014 3.986 6 N -0.278 5.278 7 C 0.143 3.857 8 C -0.586 4.586 9 H 0.065 0.935 10 C -0.175 4.175 11 N -0.556 5.556 12 Si 0.777 3.223 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.203 1.203 16 C 0.131 3.869 17 C -0.172 4.172 18 N -0.124 5.124 19 C -0.161 4.161 20 C 0.047 3.953 21 C -0.064 4.064 22 N -0.141 5.141 23 N -0.051 5.051 24 N -0.044 5.044 25 H 0.358 0.642 26 N -0.122 5.122 27 N -0.209 5.209 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.179 0.821 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 14.262 2.212 -12.056 18.805 hybrid contribution -0.167 -0.857 1.070 1.381 sum 14.094 1.355 -10.986 17.922 Atomic orbital electron populations 1.21885 0.94738 1.01136 1.01432 1.20920 0.95691 0.96349 0.94984 1.21719 1.01089 0.93488 1.02378 1.21649 1.00685 0.98403 0.96555 1.21503 0.99163 0.80510 0.97448 1.46978 1.20811 1.05190 1.54785 1.19186 0.79154 0.96618 0.90704 1.21693 0.93394 1.47252 0.96289 0.93453 1.25553 0.94725 0.95003 1.02206 1.69985 0.99282 1.48542 1.37742 0.85713 0.77413 0.78679 0.80487 1.19772 1.20490 1.20279 1.19216 0.88188 0.89259 0.90198 1.23353 1.02118 0.89180 1.02597 1.68305 1.05558 1.33282 1.05226 1.23447 0.93768 0.95703 1.03191 1.18612 0.89306 0.91013 0.96329 1.22784 0.95874 0.86686 1.01095 1.76268 0.99672 1.22535 1.15644 1.78923 1.13609 1.01701 1.10903 1.47819 1.14923 1.04846 1.36809 0.64225 1.74858 0.96389 1.24056 1.16926 1.67749 1.05081 1.34370 1.13660 0.93146 0.91842 0.94126 0.92326 0.91407 0.92244 0.95706 0.92550 0.92716 0.91515 0.90723 0.94054 0.95940 0.92308 0.82051 0.78990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.22 71.98 0.52 -3.70 16 2 C -0.08 -2.36 0.84 -52.18 -0.04 -2.41 16 3 C -0.13 -3.15 8.47 71.98 0.61 -2.54 16 4 C -0.12 -3.56 7.19 71.98 0.52 -3.04 16 5 C 0.14 4.92 4.62 86.38 0.40 5.32 16 6 N -0.57 -23.20 2.07 -707.87 -1.46 -24.67 16 7 C 0.26 12.38 3.92 85.63 0.34 12.72 16 8 C -0.55 -28.62 9.39 25.60 0.24 -28.38 16 9 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 10 C 0.03 1.36 5.46 84.66 0.46 1.82 16 11 N -0.92 -50.33 13.29 21.45 0.28 -50.04 16 12 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 16 C 0.37 14.82 5.61 133.09 0.75 15.57 16 17 C 0.00 -0.06 10.42 84.95 0.89 0.83 16 18 N -0.41 -15.02 10.48 -193.84 -2.03 -17.05 16 19 C 0.00 0.06 10.87 84.89 0.92 0.98 16 20 C 0.19 6.29 6.76 41.91 0.28 6.57 16 21 C 0.22 6.15 8.05 137.35 1.11 7.25 16 22 N -0.27 -7.86 12.53 -52.20 -0.65 -8.51 16 23 N -0.06 -1.24 13.47 37.02 0.50 -0.74 16 24 N -0.19 -2.83 7.90 37.02 0.29 -2.53 16 25 H 0.50 1.63 8.96 -347.54 -3.12 -1.49 16 26 N -0.27 -5.63 12.07 -52.14 -0.63 -6.26 16 27 N -0.48 -17.84 7.65 -181.68 -1.39 -19.23 16 28 H 0.05 1.60 8.08 -2.39 -0.02 1.58 16 29 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.04 1.46 5.99 -2.39 -0.01 1.45 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.02 0.86 6.21 -2.39 -0.01 0.84 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.76 7.70 -2.39 -0.02 1.74 16 37 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 38 H 0.07 2.72 7.31 -2.39 -0.02 2.70 16 39 H 0.04 2.02 6.05 -2.39 -0.01 2.00 16 40 H 0.02 1.12 6.00 -2.39 -0.01 1.11 16 41 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 42 H 0.16 6.94 6.03 -2.91 -0.02 6.92 16 43 H 0.19 4.67 7.87 -2.91 -0.02 4.65 16 Total: -1.00 -62.58 354.23 1.86 -60.72 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -2.06 Total: 12.79 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.98 Total: 10.99 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -5.09 Total: -129.03 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -62.58 1.86 -60.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589129630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.138 kcal (2) G-P(sol) polarization free energy of solvation -62.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds