Wall clock time and date at job start Tue Mar 31 2020 11:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46811 * 2 1 4 4 C 1.52998 * 109.47358 * 120.00179 * 2 1 3 5 5 C 1.52997 * 109.47030 * 175.00363 * 4 2 1 6 6 N 1.46506 * 109.46793 * 179.97438 * 5 4 2 7 7 C 1.46497 * 119.99611 * 269.99621 * 6 5 4 8 8 C 1.50698 * 109.46945 * 269.99799 * 7 6 5 9 9 H 1.08000 * 120.00435 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00019 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99749 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00330 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47067 * 90.00246 * 12 10 8 14 14 H 1.48502 * 109.47244 * 210.00438 * 12 10 8 15 15 H 1.48504 * 109.46876 * 330.00177 * 12 10 8 16 16 C 1.38579 * 120.00073 * 89.99982 * 6 5 4 17 17 C 1.39461 * 120.49177 * 184.99870 * 16 6 5 18 18 C 1.39197 * 118.22366 * 179.97438 * 17 16 6 19 19 C 1.48423 * 120.50492 * 180.02562 * 18 17 16 20 20 N 1.34067 * 126.67386 * 359.97438 * 19 18 17 21 21 N 1.28984 * 107.26202 * 179.97438 * 20 19 18 22 22 N 1.28731 * 108.95194 * 359.97438 * 21 20 19 23 23 H 0.96997 * 125.34017 * 179.97438 * 22 21 20 24 24 N 1.28871 * 109.31971 * 359.75168 * 22 21 20 25 25 N 1.33356 * 118.98890 * 359.97438 * 18 17 16 26 26 C 1.31634 * 120.88911 * 0.02562 * 25 18 17 27 27 N 1.31799 * 121.96579 * 0.25806 * 26 25 18 28 28 H 1.08994 * 109.46907 * 299.99920 * 1 2 3 29 29 H 1.09000 * 109.46929 * 60.00168 * 1 2 3 30 30 H 1.09003 * 109.46576 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46646 * 240.00084 * 2 1 3 32 32 H 1.08999 * 109.47007 * 59.99975 * 3 2 1 33 33 H 1.09001 * 109.46800 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47000 * 300.00139 * 3 2 1 35 35 H 1.08999 * 109.47104 * 54.99747 * 4 2 1 36 36 H 1.09005 * 109.46437 * 295.00364 * 4 2 1 37 37 H 1.08994 * 109.47229 * 59.99850 * 5 4 2 38 38 H 1.09001 * 109.47050 * 299.99210 * 5 4 2 39 39 H 1.09000 * 109.47610 * 30.00288 * 7 6 5 40 40 H 1.09004 * 109.46870 * 150.00432 * 7 6 5 41 41 H 0.96996 * 119.99868 * 179.97438 * 11 10 8 42 42 H 1.07992 * 120.89033 * 359.97438 * 17 16 6 43 43 H 1.08002 * 119.01325 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8309 1.1879 6 7 4.0534 -1.5211 2.3844 7 6 4.4018 -0.7528 3.5821 8 6 5.8557 -0.3609 3.5221 9 1 6.4597 -0.6544 2.6763 10 6 6.4149 0.3723 4.5472 11 7 5.6795 0.7293 5.5775 12 14 8.2169 0.8587 4.4727 13 1 8.3471 2.1732 3.7943 14 1 8.7605 0.9569 5.8511 15 1 8.9755 -0.1676 3.7133 16 6 4.1858 -2.9005 2.3831 17 6 4.5499 -3.5775 3.5467 18 6 4.6687 -4.9633 3.4922 19 6 5.0527 -5.7347 4.7007 20 7 5.3178 -5.2376 5.9172 21 7 5.6090 -6.2340 6.6828 22 7 5.5362 -7.3220 5.9987 23 1 5.7090 -8.2128 6.3414 24 7 5.1931 -7.0425 4.7884 25 7 4.4312 -5.5875 2.3379 26 6 4.0896 -4.9109 1.2616 27 7 3.9719 -3.5982 1.2708 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6055 -1.7198 1.2951 36 1 1.7517 -0.1583 2.1369 37 1 3.9995 0.1676 1.1420 38 1 3.8533 -1.3939 0.3002 39 1 3.7852 0.1448 3.6302 40 1 4.2260 -1.3623 4.4685 41 1 6.0730 1.2448 6.2988 42 1 4.7347 -3.0410 4.4655 43 1 3.9047 -5.4471 0.3425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589600328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:23 Heat of formation + Delta-G solvation = 165.669269 kcal Electronic energy + Delta-G solvation = -26242.481341 eV Core-core repulsion = 22553.790738 eV Total energy + Delta-G solvation = -3688.690603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.34459 -40.36981 -37.46664 -35.60619 -34.46669 -33.73416 -32.79762 -31.72877 -30.99320 -29.02026 -27.08603 -26.81062 -25.22122 -24.65408 -23.70020 -22.94901 -22.33518 -20.50283 -19.72168 -19.08975 -17.20487 -17.04200 -16.89716 -16.50329 -15.31447 -14.83865 -14.83610 -14.53662 -14.26304 -14.17975 -13.89080 -13.70970 -13.53557 -12.95501 -12.70729 -12.38094 -12.17737 -12.08338 -11.80465 -11.44592 -11.41283 -11.22961 -11.08850 -11.01755 -10.89646 -10.83294 -10.74722 -10.48368 -10.29827 -10.22976 -10.20902 -9.88297 -9.57533 -9.09805 -8.78084 -8.55270 -7.14545 -6.15401 -4.24343 0.87055 1.33671 1.82068 2.29271 2.62452 3.24610 3.32192 3.35277 3.50590 3.66940 4.23472 4.34700 4.44349 4.78922 5.04014 5.06656 5.12339 5.15242 5.17302 5.33634 5.47199 5.60306 5.70440 5.72165 5.81321 5.88276 5.95196 5.98340 6.01269 6.10267 6.20931 6.25821 6.30664 6.38105 6.42405 6.57140 6.66083 6.76440 6.92206 7.12476 7.36033 7.74565 7.98410 8.04232 8.11440 8.26713 8.71138 8.85133 9.43056 10.89807 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.008355 B = 0.005005 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.497106 B = 5593.167767 C = 8189.431709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.127 4.127 5 C 0.125 3.875 6 N -0.565 5.565 7 C 0.246 3.754 8 C -0.538 4.538 9 H 0.060 0.940 10 C 0.068 3.932 11 N -0.888 5.888 12 Si 0.896 3.104 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.450 3.550 17 C -0.224 4.224 18 C 0.254 3.746 19 C 0.228 3.772 20 N -0.244 5.244 21 N -0.054 5.054 22 N -0.235 5.235 23 H 0.474 0.526 24 N -0.263 5.263 25 N -0.557 5.557 26 C 0.333 3.667 27 N -0.583 5.583 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.266 0.734 42 H 0.162 0.838 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 -9.183 -5.630 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.166 4.166 5 C 0.001 3.999 6 N -0.271 5.271 7 C 0.127 3.873 8 C -0.577 4.577 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.526 5.526 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.204 3.796 17 C -0.256 4.256 18 C 0.112 3.888 19 C -0.053 4.053 20 N -0.118 5.118 21 N -0.049 5.049 22 N -0.080 5.080 23 H 0.327 0.673 24 N -0.115 5.115 25 N -0.279 5.279 26 C 0.043 3.957 27 N -0.309 5.309 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.179 0.821 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.987 -9.358 -5.589 12.436 hybrid contribution 1.222 0.225 0.624 1.391 sum -4.764 -9.133 -4.965 11.436 Atomic orbital electron populations 1.21824 0.95649 1.01396 1.01347 1.21032 0.95293 0.96332 0.98430 1.21910 1.01641 0.95870 1.01325 1.22014 0.96523 1.00377 0.97658 1.21455 0.92819 0.97668 0.87928 1.47264 1.63019 1.00707 1.16131 1.19537 0.96103 0.90932 0.80771 1.21441 0.95006 1.35053 1.06211 0.92147 1.24907 0.98236 0.95462 0.94971 1.69911 1.36229 1.37607 1.08887 0.86516 0.84734 0.78891 0.77485 1.20519 1.20947 1.19852 1.18458 0.86689 0.86509 0.87972 1.22243 1.08124 0.93639 1.01570 1.17543 0.94931 0.88321 0.87961 1.23152 1.02245 0.86358 0.93590 1.76243 1.14654 1.20742 1.00188 1.78967 1.15624 0.88831 1.21506 1.47850 1.43395 1.11976 1.04810 0.67259 1.75109 1.17844 1.17022 1.01543 1.68110 1.19853 1.40957 0.99010 1.24355 0.89813 0.86129 0.95453 1.67930 1.25214 1.09497 1.28285 0.92839 0.93076 0.92954 0.91242 0.92627 0.92077 0.93262 0.92140 0.91893 0.90254 0.90403 0.94014 0.94085 0.92433 0.82055 0.79207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.09 -1.11 2.92 -90.61 -0.26 -1.38 16 3 C -0.15 -1.79 8.95 37.16 0.33 -1.46 16 4 C -0.13 -1.87 5.01 -26.73 -0.13 -2.00 16 5 C 0.12 2.13 5.24 -4.04 -0.02 2.11 16 6 N -0.56 -11.39 2.56 -175.06 -0.45 -11.84 16 7 C 0.25 5.78 5.03 -5.20 -0.03 5.75 16 8 C -0.54 -14.06 9.39 -34.44 -0.32 -14.38 16 9 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 10 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 11 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 12 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.45 8.94 7.39 -154.77 -1.14 7.79 16 17 C -0.22 -4.53 8.99 -38.77 -0.35 -4.88 16 18 C 0.25 4.78 6.79 -82.65 -0.56 4.22 16 19 C 0.23 4.04 8.06 -156.29 -1.26 2.78 16 20 N -0.24 -4.41 12.30 32.15 0.40 -4.02 16 21 N -0.05 -0.79 13.47 60.35 0.81 0.02 16 22 N -0.23 -2.68 7.90 60.35 0.48 -2.21 16 23 H 0.47 2.72 8.96 -340.37 -3.05 -0.33 16 24 N -0.26 -3.93 12.40 32.17 0.40 -3.53 16 25 N -0.56 -9.80 10.40 -11.18 -0.12 -9.92 16 26 C 0.33 5.31 12.28 -92.29 -1.13 4.18 16 27 N -0.58 -10.41 9.22 -13.86 -0.13 -10.53 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.39 6.49 -51.93 -0.34 1.05 16 38 H 0.08 1.30 7.33 -51.93 -0.38 0.92 16 39 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 40 H 0.04 1.02 6.05 -51.93 -0.31 0.71 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.16 3.54 6.06 -52.49 -0.32 3.22 16 43 H 0.19 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -30.51 365.90 -10.53 -41.04 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.51 Total: 0.20 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -4.64 Total: 3.22 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: 2.13 Total: -65.94 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.51 -10.53 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589600328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.710 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds