Wall clock time and date at job start Tue Mar 31 2020 11:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46811 * 2 1 4 4 C 1.52998 * 109.47358 * 120.00179 * 2 1 3 5 5 C 1.52997 * 109.47030 * 175.00363 * 4 2 1 6 6 N 1.46506 * 109.46793 * 179.97438 * 5 4 2 7 7 C 1.46497 * 119.99611 * 269.99621 * 6 5 4 8 8 C 1.50698 * 109.46945 * 269.99799 * 7 6 5 9 9 H 1.08000 * 120.00435 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00019 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99749 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00330 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47067 * 90.00246 * 12 10 8 14 14 H 1.48502 * 109.47244 * 210.00438 * 12 10 8 15 15 H 1.48504 * 109.46876 * 330.00177 * 12 10 8 16 16 C 1.38579 * 120.00073 * 89.99982 * 6 5 4 17 17 C 1.39461 * 120.49177 * 184.99870 * 16 6 5 18 18 C 1.39197 * 118.22366 * 179.97438 * 17 16 6 19 19 C 1.48423 * 120.50492 * 180.02562 * 18 17 16 20 20 N 1.34067 * 126.67386 * 359.97438 * 19 18 17 21 21 N 1.28984 * 107.26202 * 179.97438 * 20 19 18 22 22 N 1.28731 * 108.95194 * 359.97438 * 21 20 19 23 23 H 0.96997 * 125.34017 * 179.97438 * 22 21 20 24 24 N 1.28871 * 109.31971 * 359.75168 * 22 21 20 25 25 N 1.33356 * 118.98890 * 359.97438 * 18 17 16 26 26 C 1.31634 * 120.88911 * 0.02562 * 25 18 17 27 27 N 1.31799 * 121.96579 * 0.25806 * 26 25 18 28 28 H 1.08994 * 109.46907 * 299.99920 * 1 2 3 29 29 H 1.09000 * 109.46929 * 60.00168 * 1 2 3 30 30 H 1.09003 * 109.46576 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46646 * 240.00084 * 2 1 3 32 32 H 1.08999 * 109.47007 * 59.99975 * 3 2 1 33 33 H 1.09001 * 109.46800 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47000 * 300.00139 * 3 2 1 35 35 H 1.08999 * 109.47104 * 54.99747 * 4 2 1 36 36 H 1.09005 * 109.46437 * 295.00364 * 4 2 1 37 37 H 1.08994 * 109.47229 * 59.99850 * 5 4 2 38 38 H 1.09001 * 109.47050 * 299.99210 * 5 4 2 39 39 H 1.09000 * 109.47610 * 30.00288 * 7 6 5 40 40 H 1.09004 * 109.46870 * 150.00432 * 7 6 5 41 41 H 0.96996 * 119.99868 * 179.97438 * 11 10 8 42 42 H 1.07992 * 120.89033 * 359.97438 * 17 16 6 43 43 H 1.08002 * 119.01325 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8309 1.1879 6 7 4.0534 -1.5211 2.3844 7 6 4.4018 -0.7528 3.5821 8 6 5.8557 -0.3609 3.5221 9 1 6.4597 -0.6544 2.6763 10 6 6.4149 0.3723 4.5472 11 7 5.6795 0.7293 5.5775 12 14 8.2169 0.8587 4.4727 13 1 8.3471 2.1732 3.7943 14 1 8.7605 0.9569 5.8511 15 1 8.9755 -0.1676 3.7133 16 6 4.1858 -2.9005 2.3831 17 6 4.5499 -3.5775 3.5467 18 6 4.6687 -4.9633 3.4922 19 6 5.0527 -5.7347 4.7007 20 7 5.3178 -5.2376 5.9172 21 7 5.6090 -6.2340 6.6828 22 7 5.5362 -7.3220 5.9987 23 1 5.7090 -8.2128 6.3414 24 7 5.1931 -7.0425 4.7884 25 7 4.4312 -5.5875 2.3379 26 6 4.0896 -4.9109 1.2616 27 7 3.9719 -3.5982 1.2708 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6055 -1.7198 1.2951 36 1 1.7517 -0.1583 2.1369 37 1 3.9995 0.1676 1.1420 38 1 3.8533 -1.3939 0.3002 39 1 3.7852 0.1448 3.6302 40 1 4.2260 -1.3623 4.4685 41 1 6.0730 1.2448 6.2988 42 1 4.7347 -3.0410 4.4655 43 1 3.9047 -5.4471 0.3425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589600328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:22 Heat of formation + Delta-G solvation = 148.313984 kcal Electronic energy + Delta-G solvation = -26243.233923 eV Core-core repulsion = 22553.790738 eV Total energy + Delta-G solvation = -3689.443184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.56818 -41.81367 -38.84790 -36.86724 -35.76463 -35.13849 -34.63390 -33.13732 -32.36902 -30.56472 -28.56204 -27.94242 -26.56477 -26.01397 -25.31607 -24.25815 -23.83738 -21.93475 -20.80104 -20.29026 -18.75918 -18.45156 -18.32068 -18.24910 -16.80581 -16.49081 -16.22730 -15.92963 -15.68316 -15.55395 -15.20024 -14.94632 -14.79507 -14.40817 -14.33097 -13.64307 -13.41341 -13.34426 -13.22345 -12.97597 -12.79421 -12.63521 -12.60424 -12.41742 -12.28972 -12.26037 -12.14274 -12.02682 -11.65422 -11.49751 -11.49188 -11.35232 -11.28524 -10.62387 -10.54342 -10.20985 -8.77592 -8.16737 -6.36338 -0.50161 0.09449 0.37788 1.23467 1.31164 1.37834 1.40177 1.49296 2.03802 2.30196 2.39783 2.94506 3.01048 3.08429 3.49187 3.73047 3.84328 3.99626 4.04306 4.09864 4.13690 4.35494 4.37977 4.54628 4.62995 4.70852 4.76800 4.84136 4.87626 4.93577 5.02700 5.07874 5.16082 5.19313 5.23087 5.36737 5.42214 5.52212 5.57099 5.58581 5.62596 5.83313 6.02421 6.38542 6.54378 6.75774 7.02137 7.29060 7.37214 8.83774 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.008355 B = 0.005005 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.497106 B = 5593.167767 C = 8189.431709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.115 4.115 5 C 0.127 3.873 6 N -0.574 5.574 7 C 0.265 3.735 8 C -0.545 4.545 9 H 0.050 0.950 10 C 0.023 3.977 11 N -0.918 5.918 12 Si 0.954 3.046 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.276 1.276 16 C 0.441 3.559 17 C -0.251 4.251 18 C 0.262 3.738 19 C 0.206 3.794 20 N -0.281 5.281 21 N -0.052 5.052 22 N -0.194 5.194 23 H 0.498 0.502 24 N -0.254 5.254 25 N -0.558 5.558 26 C 0.340 3.660 27 N -0.581 5.581 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.027 0.973 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.135 0.865 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 -10.684 -7.227 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.206 4.206 4 C -0.154 4.154 5 C 0.005 3.995 6 N -0.281 5.281 7 C 0.144 3.856 8 C -0.583 4.583 9 H 0.068 0.932 10 C -0.178 4.178 11 N -0.557 5.557 12 Si 0.779 3.221 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.201 1.201 16 C 0.196 3.804 17 C -0.283 4.283 18 C 0.119 3.881 19 C -0.075 4.075 20 N -0.155 5.155 21 N -0.047 5.047 22 N -0.046 5.046 23 H 0.358 0.642 24 N -0.108 5.108 25 N -0.279 5.279 26 C 0.050 3.950 27 N -0.307 5.307 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.153 0.847 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -5.923 -10.882 -7.202 14.331 hybrid contribution 1.199 0.478 1.136 1.720 sum -4.724 -10.405 -6.065 12.937 Atomic orbital electron populations 1.21795 0.94293 1.01793 1.02015 1.21014 0.96363 0.96075 0.97112 1.21899 1.00949 0.95892 1.01905 1.21899 0.94788 1.00158 0.98549 1.21567 0.94184 0.96927 0.86854 1.47111 1.63934 1.01088 1.15972 1.19029 0.94663 0.90218 0.81684 1.21631 0.96136 1.34799 1.05779 0.93167 1.25630 1.01962 0.95529 0.94685 1.70006 1.37808 1.38359 1.09493 0.85612 0.80152 0.78776 0.77513 1.19348 1.20581 1.20065 1.18548 0.86925 0.86378 0.88584 1.22055 1.10789 0.94507 1.00951 1.17689 0.93672 0.87900 0.88849 1.23044 1.03842 0.87174 0.93405 1.76246 1.16072 1.22308 1.00824 1.78898 1.15588 0.89087 1.21132 1.47899 1.40468 1.12656 1.03570 0.64225 1.75048 1.17404 1.15675 1.02631 1.68248 1.19983 1.40811 0.98901 1.25363 0.87545 0.85589 0.96459 1.68020 1.25247 1.10321 1.27105 0.93324 0.91271 0.92714 0.90251 0.93498 0.93154 0.91219 0.92704 0.93556 0.91140 0.89679 0.95495 0.96149 0.92287 0.84709 0.74457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.19 71.99 0.66 -2.16 16 2 C -0.09 -2.00 2.92 -10.79 -0.03 -2.03 16 3 C -0.15 -3.43 8.95 71.98 0.64 -2.79 16 4 C -0.12 -3.42 5.01 30.59 0.15 -3.27 16 5 C 0.13 4.40 5.24 86.38 0.45 4.86 16 6 N -0.57 -24.02 2.56 -707.77 -1.81 -25.84 16 7 C 0.26 13.15 5.03 85.63 0.43 13.58 16 8 C -0.54 -29.45 9.39 25.60 0.24 -29.21 16 9 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 10 C 0.02 1.23 5.46 84.65 0.46 1.69 16 11 N -0.92 -52.39 13.29 21.45 0.28 -52.10 16 12 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 C 0.44 17.88 7.39 133.10 0.98 18.86 16 17 C -0.25 -10.56 8.99 22.80 0.20 -10.36 16 18 C 0.26 9.88 6.79 41.86 0.28 10.17 16 19 C 0.21 7.28 8.06 137.36 1.11 8.39 16 20 N -0.28 -10.29 12.30 -52.19 -0.64 -10.94 16 21 N -0.05 -1.49 13.47 37.02 0.50 -0.99 16 22 N -0.19 -4.05 7.90 37.02 0.29 -3.76 16 23 H 0.50 4.31 8.96 -347.54 -3.12 1.20 16 24 N -0.25 -7.18 12.40 -52.14 -0.65 -7.83 16 25 N -0.56 -18.77 10.40 -189.28 -1.97 -20.74 16 26 C 0.34 10.07 12.28 180.93 2.22 12.29 16 27 N -0.58 -20.15 9.22 -197.76 -1.82 -21.97 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.25 6.57 -2.39 -0.02 1.24 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.07 2.54 6.49 -2.39 -0.02 2.53 16 38 H 0.08 2.81 7.33 -2.39 -0.02 2.79 16 39 H 0.03 1.40 8.07 -2.39 -0.02 1.38 16 40 H 0.02 1.10 6.05 -2.39 -0.01 1.09 16 41 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.14 6.38 6.06 -2.91 -0.02 6.36 16 43 H 0.24 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -67.25 365.90 1.96 -65.29 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -2.07 Total: 13.26 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 7.81 Total: 20.02 kcal Atomic # 7 Polarization: -138.35 SS G_CDS: -5.82 Total: -144.16 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.25 1.96 -65.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589600328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.608 kcal (2) G-P(sol) polarization free energy of solvation -67.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds