Wall clock time and date at job start Tue Mar 31 2020 11:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 C 1.52997 * 109.46935 * 239.99986 * 2 1 3 5 5 C 1.53000 * 109.47277 * 119.99983 * 2 1 3 6 6 N 1.46498 * 109.47099 * 59.99833 * 5 2 1 7 7 C 1.46498 * 119.99963 * 270.00364 * 6 5 2 8 8 C 1.50701 * 109.46864 * 269.99682 * 7 6 5 9 9 H 1.07996 * 120.00170 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99893 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99542 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00092 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46816 * 90.00249 * 12 10 8 14 14 H 1.48503 * 109.47334 * 210.00476 * 12 10 8 15 15 H 1.48496 * 109.47140 * 330.00507 * 12 10 8 16 16 C 1.39082 * 119.99993 * 89.99723 * 6 5 2 17 17 C 1.39290 * 120.10113 * 5.28707 * 16 6 5 18 18 C 1.39646 * 117.77158 * 180.21367 * 17 16 6 19 19 C 1.48471 * 121.09651 * 179.78609 * 18 17 16 20 20 N 1.34051 * 126.67166 * 359.40018 * 19 18 17 21 21 N 1.28991 * 107.26519 * 180.26320 * 20 19 18 22 22 N 1.28727 * 108.94656 * 0.02562 * 21 20 19 23 23 H 0.96997 * 125.34472 * 179.97438 * 22 21 20 24 24 N 1.28874 * 109.31728 * 359.97438 * 22 21 20 25 25 C 1.39881 * 117.81020 * 359.51242 * 18 17 16 26 26 N 1.31663 * 119.83913 * 0.25007 * 25 18 17 27 27 N 1.28290 * 122.41627 * 0.02562 * 26 25 18 28 28 H 1.09002 * 109.47099 * 300.00276 * 1 2 3 29 29 H 1.09000 * 109.47541 * 59.99645 * 1 2 3 30 30 H 1.08992 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47463 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46807 * 300.00059 * 3 2 1 33 33 H 1.09002 * 109.47326 * 59.99863 * 3 2 1 34 34 H 1.08997 * 109.47371 * 299.99736 * 4 2 1 35 35 H 1.09007 * 109.47314 * 59.99784 * 4 2 1 36 36 H 1.09004 * 109.46955 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.46845 * 299.99897 * 5 2 1 38 38 H 1.08997 * 109.47346 * 179.97438 * 5 2 1 39 39 H 1.09000 * 109.47765 * 29.99556 * 7 6 5 40 40 H 1.08999 * 109.47521 * 150.00194 * 7 6 5 41 41 H 0.97007 * 119.99676 * 179.97438 * 11 10 8 42 42 H 1.07999 * 121.11490 * 359.97438 * 17 16 6 43 43 H 1.07992 * 120.07874 * 180.27851 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2493 7 6 0.2716 -2.4267 1.8836 8 6 0.5025 -2.7748 3.3316 9 1 1.5026 -2.7559 3.7387 10 6 -0.5632 -3.1174 4.1366 11 7 -0.3616 -3.4206 5.4004 12 14 -2.2931 -3.1495 3.4327 13 1 -2.5839 -4.5031 2.8957 14 1 -3.2691 -2.8212 4.5027 15 1 -2.4015 -2.1497 2.3401 16 6 2.3033 -3.1058 0.6469 17 6 3.5694 -2.8217 0.1405 18 6 4.2797 -3.8644 -0.4582 19 6 5.6333 -3.6429 -1.0265 20 7 6.3112 -2.4867 -1.0528 21 7 7.4389 -2.7173 -1.6352 22 7 7.4900 -3.9591 -1.9702 23 1 8.2327 -4.3879 -2.4236 24 7 6.3997 -4.5435 -1.6088 25 6 3.6763 -5.1257 -0.4997 26 7 2.4751 -5.2944 0.0123 27 7 1.8192 -4.3362 0.5578 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6765 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -0.2074 2.1392 38 1 3.1300 -0.7216 1.2490 39 1 -0.3945 -1.5665 1.8185 40 1 -0.1817 -3.2767 1.3735 41 1 -1.1114 -3.6613 5.9669 42 1 3.9862 -1.8275 0.2052 43 1 4.1947 -5.9591 -0.9501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603074558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:16 Heat of formation + Delta-G solvation = 192.001554 kcal Electronic energy + Delta-G solvation = -27118.276865 eV Core-core repulsion = 23430.728116 eV Total energy + Delta-G solvation = -3687.548749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.67412 -40.65406 -38.31234 -35.12249 -34.78158 -34.07953 -32.71142 -31.73907 -30.75514 -28.42617 -27.16948 -26.98115 -25.90128 -25.29052 -24.76987 -23.08608 -22.56652 -20.83241 -19.36506 -18.76411 -17.35947 -17.17074 -16.98234 -16.94341 -15.88832 -15.20603 -15.03468 -14.56610 -14.24540 -14.21862 -14.06130 -13.70018 -13.20735 -13.05263 -12.56703 -12.40908 -12.24594 -12.02920 -11.84935 -11.65894 -11.54760 -11.48075 -11.42888 -11.38475 -11.28564 -10.88710 -10.65500 -10.59838 -10.44349 -10.32607 -10.25704 -9.82133 -9.43986 -9.34143 -9.10716 -8.56377 -7.09116 -6.07367 -4.06210 0.50039 0.99312 1.57748 1.99529 2.30264 3.29257 3.33720 3.37597 3.40444 3.50862 3.99485 4.12293 4.40997 4.78504 4.86393 4.91350 4.94178 5.00408 5.07316 5.14754 5.22871 5.26154 5.43817 5.57828 5.64412 5.71057 5.83909 5.88432 5.91627 6.03048 6.05641 6.12353 6.13468 6.18428 6.29581 6.31098 6.35136 6.49486 6.55571 6.74362 6.93808 7.59824 7.71867 7.89225 7.92152 8.50816 8.96099 9.38781 9.52677 11.05978 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.004412 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.035985 B = 6345.200013 C = 7566.443716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.142 4.142 5 C 0.129 3.871 6 N -0.562 5.562 7 C 0.218 3.782 8 C -0.529 4.529 9 H 0.073 0.927 10 C 0.075 3.925 11 N -0.897 5.897 12 Si 0.872 3.128 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.265 1.265 16 C 0.364 3.636 17 C -0.145 4.145 18 C 0.011 3.989 19 C 0.227 3.773 20 N -0.261 5.261 21 N -0.050 5.050 22 N -0.227 5.227 23 H 0.476 0.524 24 N -0.283 5.283 25 C -0.008 4.008 26 N -0.194 5.194 27 N -0.279 5.279 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.043 0.957 41 H 0.264 0.736 42 H 0.154 0.846 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.248 4.564 -16.363 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.199 4.199 5 C 0.005 3.995 6 N -0.269 5.269 7 C 0.098 3.902 8 C -0.568 4.568 9 H 0.091 0.909 10 C -0.127 4.127 11 N -0.535 5.535 12 Si 0.699 3.301 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.190 1.190 16 C 0.122 3.878 17 C -0.182 4.182 18 C -0.003 4.003 19 C -0.053 4.053 20 N -0.134 5.134 21 N -0.045 5.045 22 N -0.073 5.073 23 H 0.330 0.670 24 N -0.135 5.135 25 C -0.180 4.180 26 N -0.035 5.035 27 N -0.133 5.133 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.172 0.828 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.262 4.025 -15.896 19.893 hybrid contribution 0.549 0.301 -0.615 0.878 sum 11.812 4.326 -16.511 20.757 Atomic orbital electron populations 1.21973 0.94169 1.02729 1.01170 1.21044 0.96677 0.95363 0.95837 1.21801 1.00888 0.95012 1.01832 1.21993 1.00667 1.00521 0.96736 1.21628 0.98710 0.81288 0.97856 1.46704 1.21891 1.03585 1.54719 1.19905 0.79744 0.96884 0.93688 1.21331 0.96088 1.46835 0.92501 0.90856 1.24815 0.98842 0.94439 0.94637 1.69898 1.31653 1.46354 1.05623 0.86908 0.84773 0.79379 0.79010 1.19699 1.21217 1.19002 1.19896 0.88221 0.90228 0.89489 1.21910 0.94267 1.00799 1.01223 1.18013 0.88026 0.95325 0.98910 1.23406 0.96723 0.85787 0.99418 1.76120 0.98880 1.23069 1.15322 1.78925 1.15356 0.99203 1.11037 1.47746 1.14698 1.06176 1.38717 0.66990 1.74952 0.95939 1.25469 1.17183 1.23876 0.95147 0.95765 1.03213 1.72855 1.04804 1.23055 1.02823 1.73074 1.27594 0.96525 1.16102 0.92366 0.93365 0.91623 0.92575 0.92687 0.92350 0.92658 0.93066 0.92550 0.89072 0.91150 0.94452 0.93924 0.92588 0.82836 0.81609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.23 37.16 0.27 -1.74 16 2 C -0.09 -1.15 0.84 -154.51 -0.13 -1.28 16 3 C -0.14 -1.46 8.47 37.16 0.31 -1.15 16 4 C -0.14 -1.83 6.98 37.16 0.26 -1.57 16 5 C 0.13 2.01 4.53 -4.04 -0.02 1.99 16 6 N -0.56 -10.83 2.07 -175.10 -0.36 -11.19 16 7 C 0.22 4.98 3.21 -5.19 -0.02 4.97 16 8 C -0.53 -14.57 9.94 -34.44 -0.34 -14.91 16 9 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 10 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 11 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 12 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 16 C 0.36 6.97 5.92 -154.78 -0.92 6.05 16 17 C -0.14 -2.31 7.12 -38.66 -0.28 -2.59 16 18 C 0.01 0.17 5.92 -104.54 -0.62 -0.45 16 19 C 0.23 3.01 7.98 -156.29 -1.25 1.76 16 20 N -0.26 -3.42 12.37 32.16 0.40 -3.02 16 21 N -0.05 -0.53 13.47 60.35 0.81 0.28 16 22 N -0.23 -1.79 7.90 60.35 0.48 -1.31 16 23 H 0.48 1.27 8.96 -340.37 -3.05 -1.79 16 24 N -0.28 -3.08 12.18 32.17 0.39 -2.69 16 25 C -0.01 -0.13 11.02 -17.01 -0.19 -0.32 16 26 N -0.19 -3.76 11.48 30.76 0.35 -3.40 16 27 N -0.28 -5.99 10.25 31.21 0.32 -5.67 16 28 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.07 5.99 -51.93 -0.31 0.76 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.83 6.11 -51.93 -0.32 0.52 16 35 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.06 0.69 6.71 -51.93 -0.35 0.34 16 37 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 38 H 0.07 0.99 6.02 -51.93 -0.31 0.67 16 39 H 0.04 0.82 5.11 -51.93 -0.27 0.56 16 40 H 0.04 1.04 6.75 -51.93 -0.35 0.69 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.15 2.19 5.06 -52.49 -0.27 1.93 16 43 H 0.17 2.11 7.97 -52.49 -0.42 1.69 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -33.24 348.41 -7.44 -40.69 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.18 Total: -1.67 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -3.01 Total: -7.21 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 3.16 Total: -53.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.24 -7.44 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603074558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.689 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds