Wall clock time and date at job start Tue Mar 31 2020 11:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 C 1.52997 * 109.46935 * 239.99986 * 2 1 3 5 5 C 1.53000 * 109.47277 * 119.99983 * 2 1 3 6 6 N 1.46498 * 109.47099 * 59.99833 * 5 2 1 7 7 C 1.46498 * 119.99963 * 270.00364 * 6 5 2 8 8 C 1.50701 * 109.46864 * 269.99682 * 7 6 5 9 9 H 1.07996 * 120.00170 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99893 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99542 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00092 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46816 * 90.00249 * 12 10 8 14 14 H 1.48503 * 109.47334 * 210.00476 * 12 10 8 15 15 H 1.48496 * 109.47140 * 330.00507 * 12 10 8 16 16 C 1.39082 * 119.99993 * 89.99723 * 6 5 2 17 17 C 1.39290 * 120.10113 * 5.28707 * 16 6 5 18 18 C 1.39646 * 117.77158 * 180.21367 * 17 16 6 19 19 C 1.48471 * 121.09651 * 179.78609 * 18 17 16 20 20 N 1.34051 * 126.67166 * 359.40018 * 19 18 17 21 21 N 1.28991 * 107.26519 * 180.26320 * 20 19 18 22 22 N 1.28727 * 108.94656 * 0.02562 * 21 20 19 23 23 H 0.96997 * 125.34472 * 179.97438 * 22 21 20 24 24 N 1.28874 * 109.31728 * 359.97438 * 22 21 20 25 25 C 1.39881 * 117.81020 * 359.51242 * 18 17 16 26 26 N 1.31663 * 119.83913 * 0.25007 * 25 18 17 27 27 N 1.28290 * 122.41627 * 0.02562 * 26 25 18 28 28 H 1.09002 * 109.47099 * 300.00276 * 1 2 3 29 29 H 1.09000 * 109.47541 * 59.99645 * 1 2 3 30 30 H 1.08992 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47463 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46807 * 300.00059 * 3 2 1 33 33 H 1.09002 * 109.47326 * 59.99863 * 3 2 1 34 34 H 1.08997 * 109.47371 * 299.99736 * 4 2 1 35 35 H 1.09007 * 109.47314 * 59.99784 * 4 2 1 36 36 H 1.09004 * 109.46955 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.46845 * 299.99897 * 5 2 1 38 38 H 1.08997 * 109.47346 * 179.97438 * 5 2 1 39 39 H 1.09000 * 109.47765 * 29.99556 * 7 6 5 40 40 H 1.08999 * 109.47521 * 150.00194 * 7 6 5 41 41 H 0.97007 * 119.99676 * 179.97438 * 11 10 8 42 42 H 1.07999 * 121.11490 * 359.97438 * 17 16 6 43 43 H 1.07992 * 120.07874 * 180.27851 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2493 7 6 0.2716 -2.4267 1.8836 8 6 0.5025 -2.7748 3.3316 9 1 1.5026 -2.7559 3.7387 10 6 -0.5632 -3.1174 4.1366 11 7 -0.3616 -3.4206 5.4004 12 14 -2.2931 -3.1495 3.4327 13 1 -2.5839 -4.5031 2.8957 14 1 -3.2691 -2.8212 4.5027 15 1 -2.4015 -2.1497 2.3401 16 6 2.3033 -3.1058 0.6469 17 6 3.5694 -2.8217 0.1405 18 6 4.2797 -3.8644 -0.4582 19 6 5.6333 -3.6429 -1.0265 20 7 6.3112 -2.4867 -1.0528 21 7 7.4389 -2.7173 -1.6352 22 7 7.4900 -3.9591 -1.9702 23 1 8.2327 -4.3879 -2.4236 24 7 6.3997 -4.5435 -1.6088 25 6 3.6763 -5.1257 -0.4997 26 7 2.4751 -5.2944 0.0123 27 7 1.8192 -4.3362 0.5578 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6765 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -0.2074 2.1392 38 1 3.1300 -0.7216 1.2490 39 1 -0.3945 -1.5665 1.8185 40 1 -0.1817 -3.2767 1.3735 41 1 -1.1114 -3.6613 5.9669 42 1 3.9862 -1.8275 0.2052 43 1 4.1947 -5.9591 -0.9501 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603074558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:15 Heat of formation + Delta-G solvation = 169.024016 kcal Electronic energy + Delta-G solvation = -27119.273246 eV Core-core repulsion = 23430.728116 eV Total energy + Delta-G solvation = -3688.545130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.56142 -42.01871 -39.56492 -36.39510 -35.87835 -35.06809 -34.70920 -32.96343 -32.22865 -30.08036 -28.16510 -28.08798 -27.19933 -26.54096 -25.78302 -24.42020 -24.02498 -22.24674 -20.27054 -19.86304 -19.06414 -18.41778 -18.37838 -18.22651 -17.22351 -16.59426 -16.43908 -16.02195 -15.66734 -15.35020 -15.16327 -15.03605 -14.60663 -14.29411 -14.20845 -13.63820 -13.43752 -13.37491 -13.08216 -12.92388 -12.76465 -12.54510 -12.49306 -12.47933 -12.38281 -12.30937 -12.27568 -11.95681 -11.82911 -11.70798 -11.52979 -11.45575 -11.20924 -10.76339 -10.56119 -10.48261 -8.59111 -8.27541 -6.30908 -0.65952 0.08816 0.26411 1.19869 1.31570 1.36533 1.41257 1.47829 2.01627 2.35834 2.42905 2.76236 2.98712 3.08211 3.47427 3.64198 3.67569 3.86756 3.90792 3.95852 4.04485 4.18273 4.36526 4.46354 4.57806 4.60248 4.75240 4.78536 4.83903 4.92530 4.95250 4.97120 5.00590 5.10068 5.13483 5.20143 5.21771 5.35868 5.47633 5.51246 5.57142 5.57957 6.02252 6.40762 6.46402 6.70859 7.02018 7.32118 8.00529 8.89405 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.004412 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.035985 B = 6345.200013 C = 7566.443716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.132 4.132 4 C -0.135 4.135 5 C 0.125 3.875 6 N -0.571 5.571 7 C 0.236 3.764 8 C -0.527 4.527 9 H 0.026 0.974 10 C 0.015 3.985 11 N -0.948 5.948 12 Si 0.939 3.061 13 H -0.275 1.275 14 H -0.280 1.280 15 H -0.238 1.238 16 C 0.352 3.648 17 C -0.135 4.135 18 C 0.022 3.978 19 C 0.211 3.789 20 N -0.279 5.279 21 N -0.049 5.049 22 N -0.192 5.192 23 H 0.498 0.502 24 N -0.274 5.274 25 C 0.006 3.994 26 N -0.227 5.227 27 N -0.333 5.333 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.266 0.734 42 H 0.172 0.828 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.627 5.721 -19.177 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.190 4.190 4 C -0.192 4.192 5 C 0.002 3.998 6 N -0.280 5.280 7 C 0.114 3.886 8 C -0.566 4.566 9 H 0.045 0.955 10 C -0.183 4.183 11 N -0.588 5.588 12 Si 0.762 3.238 13 H -0.200 1.200 14 H -0.206 1.206 15 H -0.161 1.161 16 C 0.110 3.890 17 C -0.171 4.171 18 C 0.008 3.992 19 C -0.070 4.070 20 N -0.152 5.152 21 N -0.043 5.043 22 N -0.044 5.044 23 H 0.358 0.642 24 N -0.127 5.127 25 C -0.167 4.167 26 N -0.066 5.066 27 N -0.185 5.185 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.189 0.811 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 12.680 5.187 -18.750 23.222 hybrid contribution 0.434 -0.148 0.171 0.489 sum 13.114 5.039 -18.580 23.293 Atomic orbital electron populations 1.21955 0.94925 1.01167 1.01979 1.20992 0.96033 0.96673 0.94507 1.21761 1.01585 0.92951 1.02667 1.21921 1.01067 0.99077 0.97157 1.21850 0.99557 0.79546 0.98820 1.46580 1.21136 1.05033 1.55247 1.19454 0.81947 0.96612 0.90588 1.21584 0.93941 1.46018 0.95029 0.95525 1.25734 1.03594 0.94112 0.94822 1.70057 1.33110 1.48300 1.07350 0.85839 0.79026 0.79830 0.79065 1.20010 1.20554 1.16063 1.20037 0.89280 0.89725 0.90007 1.22000 0.92943 1.01886 1.00314 1.18068 0.88844 0.94632 0.97698 1.23014 0.96409 0.86567 1.01017 1.76109 0.99562 1.23355 1.16135 1.78890 1.14527 0.99961 1.10959 1.47818 1.14380 1.05421 1.36802 0.64229 1.74908 0.96309 1.25073 1.16424 1.24333 0.93981 0.97012 1.01408 1.72739 1.06498 1.23084 1.04250 1.72917 1.29534 0.97778 1.18293 0.92746 0.91344 0.94285 0.91473 0.91183 0.92206 0.95221 0.91504 0.91756 0.90356 0.89706 0.93092 0.95402 0.92513 0.81123 0.78612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 7.23 71.98 0.52 -3.32 16 2 C -0.08 -1.98 0.84 -52.18 -0.04 -2.03 16 3 C -0.13 -2.44 8.47 71.98 0.61 -1.83 16 4 C -0.13 -3.23 6.98 71.98 0.50 -2.73 16 5 C 0.13 3.86 4.53 86.38 0.39 4.25 16 6 N -0.57 -22.56 2.07 -707.89 -1.47 -24.03 16 7 C 0.24 11.09 3.21 85.63 0.27 11.37 16 8 C -0.53 -30.36 9.94 25.60 0.25 -30.10 16 9 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 10 C 0.02 0.88 5.47 84.66 0.46 1.35 16 11 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 12 Si 0.94 44.34 27.47 68.60 1.88 46.22 16 13 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 16 C 0.35 13.79 5.92 133.04 0.79 14.57 16 17 C -0.13 -4.24 7.12 22.86 0.16 -4.07 16 18 C 0.02 0.62 5.92 -19.81 -0.12 0.50 16 19 C 0.21 5.05 7.98 137.38 1.10 6.15 16 20 N -0.28 -6.60 12.37 -52.17 -0.65 -7.24 16 21 N -0.05 -0.88 13.47 37.02 0.50 -0.38 16 22 N -0.19 -2.34 7.90 37.02 0.29 -2.05 16 23 H 0.50 0.67 8.96 -347.54 -3.12 -2.44 16 24 N -0.27 -5.08 12.18 -52.12 -0.63 -5.71 16 25 C 0.01 0.18 11.02 85.12 0.94 1.11 16 26 N -0.23 -8.93 11.48 -56.58 -0.65 -9.58 16 27 N -0.33 -14.79 10.25 -55.18 -0.57 -15.35 16 28 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.25 5.99 -2.39 -0.01 1.23 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 0.86 6.11 -2.39 -0.01 0.85 16 35 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.06 1.41 6.71 -2.39 -0.02 1.40 16 37 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 38 H 0.08 2.31 6.02 -2.39 -0.01 2.30 16 39 H 0.05 2.25 5.11 -2.39 -0.01 2.24 16 40 H 0.03 1.40 6.75 -2.39 -0.02 1.38 16 41 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 42 H 0.17 4.64 5.06 -2.91 -0.01 4.63 16 43 H 0.20 4.57 7.97 -2.91 -0.02 4.55 16 Total: -1.00 -76.21 348.41 2.75 -73.46 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.11 Total: 9.10 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.84 Total: -4.79 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -2.87 Total: -123.99 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -76.21 2.75 -73.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603074558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.483 kcal (2) G-P(sol) polarization free energy of solvation -76.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds