Wall clock time and date at job start Tue Mar 31 2020 11:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.46504 * 120.00381 * 269.99975 * 6 5 4 8 8 C 1.50704 * 109.46773 * 90.00257 * 7 6 5 9 9 H 1.07998 * 119.99721 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99850 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99639 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 119.99704 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47527 * 89.99985 * 12 10 8 14 14 H 1.48503 * 109.46701 * 209.99660 * 12 10 8 15 15 H 1.48497 * 109.47342 * 329.99388 * 12 10 8 16 16 C 1.38931 * 119.99878 * 90.00197 * 6 5 4 17 17 C 1.39426 * 119.98973 * 5.00384 * 16 6 5 18 18 N 1.31792 * 120.01221 * 179.97438 * 17 16 6 19 19 C 1.33041 * 120.00187 * 359.97438 * 18 17 16 20 20 C 1.48394 * 120.01280 * 179.97438 * 19 18 17 21 21 N 1.34071 * 126.67836 * 180.02562 * 20 19 18 22 22 N 1.28980 * 107.26779 * 180.02562 * 21 20 19 23 23 N 1.28731 * 108.94831 * 359.97438 * 22 21 20 24 24 H 0.97004 * 125.33500 * 179.97438 * 23 22 21 25 25 N 1.28868 * 109.32660 * 359.73077 * 23 22 21 26 26 C 1.39247 * 119.97672 * 0.02562 * 19 18 17 27 27 N 1.32088 * 119.98769 * 359.73672 * 26 19 18 28 28 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 30 30 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 31 31 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 32 32 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 34 34 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 35 35 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 36 36 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 37 37 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 38 38 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 39 39 H 1.08992 * 109.47334 * 209.99920 * 7 6 5 40 40 H 1.08994 * 109.46680 * 330.00544 * 7 6 5 41 41 H 0.96999 * 119.99319 * 179.97438 * 11 10 8 42 42 H 1.07999 * 119.99428 * 359.94605 * 17 16 6 43 43 H 1.08002 * 120.00952 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3841 7 6 3.4514 -3.5042 2.3827 8 6 4.4729 -2.5009 2.8529 9 1 4.1635 -1.5028 3.1259 10 6 5.8023 -2.8571 2.9346 11 7 6.6937 -1.9814 3.3444 12 14 6.3374 -4.5832 2.4617 13 1 6.6734 -4.6187 1.0157 14 1 7.5316 -4.9665 3.2569 15 1 5.2327 -5.5367 2.7368 16 6 1.3263 -2.9548 3.5201 17 6 0.0235 -2.4590 3.4885 18 7 -0.7330 -2.5244 4.5657 19 6 -0.2539 -3.0641 5.6833 20 6 -1.1053 -3.1374 6.8965 21 7 -0.7611 -3.6496 8.0867 22 7 -1.7796 -3.5218 8.8676 23 7 -2.7358 -2.9552 8.2180 24 1 -3.6116 -2.7453 8.5785 25 7 -2.3454 -2.7061 7.0154 26 6 1.0472 -3.5593 5.7146 27 7 1.8033 -3.4976 4.6333 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6769 1.9563 0.8901 35 1 1.6055 -0.2618 2.1369 36 1 3.1264 -0.6445 1.2950 37 1 0.5489 -2.2724 1.1419 38 1 2.0698 -2.6550 0.3000 39 1 3.4525 -4.3646 3.0519 40 1 3.6997 -3.8293 1.3724 41 1 7.6290 -2.2322 3.4022 42 1 -0.3655 -2.0208 2.5813 43 1 1.4369 -3.9971 6.6218 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603282732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:37 Heat of formation + Delta-G solvation = 173.052227 kcal Electronic energy + Delta-G solvation = -26186.086298 eV Core-core repulsion = 22497.715844 eV Total energy + Delta-G solvation = -3688.370454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.36597 -40.64493 -37.66117 -35.67260 -34.31857 -33.80295 -33.11667 -32.58253 -30.27864 -29.48627 -27.34135 -27.06854 -25.01781 -24.67845 -23.89662 -22.63839 -22.35438 -20.61152 -19.80171 -19.26290 -17.26331 -17.12227 -17.07794 -16.84472 -16.31791 -15.10777 -14.88494 -14.58862 -14.32998 -13.96990 -13.90164 -13.67965 -13.40804 -13.14042 -12.65071 -12.37426 -12.21950 -12.18803 -12.07500 -11.77651 -11.48519 -11.31269 -11.15503 -11.07403 -11.03607 -10.97066 -10.77266 -10.58529 -10.55269 -10.42004 -10.28098 -10.14970 -9.57033 -9.20082 -8.65647 -8.62642 -7.07928 -6.12353 -4.11296 0.87678 1.24704 1.55138 2.26859 2.50405 3.22659 3.27389 3.34672 3.37676 3.64559 4.17421 4.22454 4.35522 4.74282 4.80568 4.97861 5.02322 5.07300 5.10925 5.19273 5.31970 5.39750 5.49804 5.63631 5.65154 5.70517 5.73930 5.84297 5.87233 5.95297 6.01469 6.14546 6.18966 6.35127 6.37954 6.44115 6.54912 6.57201 6.78975 6.83558 7.37159 7.51790 7.64443 7.91439 8.21404 8.35128 8.47608 8.91386 9.46982 11.00608 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.004268 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.393378 B = 6558.677364 C = 8776.018268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.135 4.135 5 C 0.122 3.878 6 N -0.559 5.559 7 C 0.218 3.782 8 C -0.524 4.524 9 H 0.077 0.923 10 C 0.075 3.925 11 N -0.895 5.895 12 Si 0.871 3.129 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.264 1.264 16 C 0.390 3.610 17 C -0.022 4.022 18 N -0.371 5.371 19 C 0.028 3.972 20 C 0.254 3.746 21 N -0.268 5.268 22 N -0.056 5.056 23 N -0.235 5.235 24 H 0.473 0.527 25 N -0.279 5.279 26 C 0.169 3.831 27 N -0.483 5.483 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.166 0.834 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.059 0.431 -0.876 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.174 4.174 5 C -0.001 4.001 6 N -0.263 5.263 7 C 0.097 3.903 8 C -0.562 4.562 9 H 0.095 0.905 10 C -0.127 4.127 11 N -0.533 5.533 12 Si 0.698 3.302 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.188 1.188 16 C 0.148 3.852 17 C -0.196 4.196 18 N -0.085 5.085 19 C -0.115 4.115 20 C -0.027 4.027 21 N -0.143 5.143 22 N -0.051 5.051 23 N -0.081 5.081 24 H 0.326 0.674 25 N -0.131 5.131 26 C 0.002 3.998 27 N -0.203 5.203 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.183 0.817 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.806 0.290 -0.445 16.814 hybrid contribution 0.076 -0.447 -0.347 0.571 sum -16.729 -0.157 -0.792 16.749 Atomic orbital electron populations 1.21936 0.95714 1.01574 1.01557 1.21070 0.95307 0.96378 0.98536 1.21808 1.01466 0.95878 1.01156 1.22148 1.03876 0.94187 0.97196 1.21676 0.98613 0.92833 0.87015 1.47049 1.16900 1.53570 1.08736 1.19851 0.78423 0.94852 0.97125 1.21259 0.90698 0.99343 1.44920 0.90508 1.24818 0.96473 0.96817 0.94631 1.69886 1.02108 1.34508 1.46828 0.86931 0.78963 0.85647 0.78672 1.20268 1.20977 1.18830 1.19600 0.88740 0.89021 0.87875 1.22971 0.91165 1.07491 0.97966 1.67843 1.34957 1.08004 0.97718 1.18111 0.92800 1.10458 0.90093 1.22957 0.88736 0.97531 0.93458 1.76065 1.18440 1.19541 1.00247 1.78862 0.92781 1.11808 1.21643 1.47770 1.15966 1.38307 1.06078 0.67373 1.75136 1.14567 1.22184 1.01254 1.23442 0.88502 0.91160 0.96725 1.68379 1.34268 1.19499 0.98194 0.92621 0.92638 0.93085 0.91225 0.92352 0.93189 0.92860 0.92069 0.89217 0.91084 0.90025 0.93598 0.95575 0.92560 0.81687 0.81016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.95 37.16 0.33 -1.16 16 2 C -0.09 -1.10 2.92 -90.62 -0.26 -1.36 16 3 C -0.15 -1.70 9.19 37.15 0.34 -1.36 16 4 C -0.14 -2.00 5.01 -26.73 -0.13 -2.14 16 5 C 0.12 1.76 5.06 -4.04 -0.02 1.74 16 6 N -0.56 -10.42 2.57 -175.05 -0.45 -10.87 16 7 C 0.22 4.84 4.26 -5.19 -0.02 4.81 16 8 C -0.52 -13.82 9.48 -34.44 -0.33 -14.15 16 9 H 0.08 2.25 7.67 -52.49 -0.40 1.85 16 10 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 11 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 12 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 16 C 0.39 7.29 7.37 -154.71 -1.14 6.15 16 17 C -0.02 -0.35 10.42 -17.13 -0.18 -0.53 16 18 N -0.37 -6.30 10.43 -9.41 -0.10 -6.39 16 19 C 0.03 0.47 6.75 -82.79 -0.56 -0.09 16 20 C 0.25 3.95 8.04 -156.29 -1.26 2.70 16 21 N -0.27 -4.02 12.22 32.15 0.39 -3.63 16 22 N -0.06 -0.69 13.47 60.35 0.81 0.12 16 23 N -0.24 -2.35 7.90 60.35 0.48 -1.87 16 24 H 0.47 2.20 8.96 -340.36 -3.05 -0.85 16 25 N -0.28 -3.82 12.39 32.16 0.40 -3.42 16 26 C 0.17 2.94 10.87 -17.07 -0.19 2.76 16 27 N -0.48 -9.70 9.32 -11.98 -0.11 -9.81 16 28 H 0.05 0.51 6.57 -51.93 -0.34 0.16 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.65 7.26 -51.93 -0.38 1.27 16 37 H 0.07 0.84 4.41 -51.93 -0.23 0.61 16 38 H 0.08 1.11 7.89 -51.93 -0.41 0.70 16 39 H 0.05 1.09 6.52 -51.93 -0.34 0.75 16 40 H 0.03 0.55 7.32 -51.93 -0.38 0.17 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.17 2.20 6.02 -52.49 -0.32 1.88 16 43 H 0.17 2.64 7.87 -52.49 -0.41 2.23 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -32.46 360.07 -8.94 -41.41 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.38 Total: -0.44 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -3.51 Total: -0.66 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 2.19 Total: -61.55 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.46 -8.94 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603282732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.457 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds