Wall clock time and date at job start Tue Mar 31 2020 11:38:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52994 * 109.47368 * 2 1
4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3
5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1
6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2
7 7 C 1.46504 * 120.00381 * 269.99975 * 6 5 4
8 8 C 1.50704 * 109.46773 * 90.00257 * 7 6 5
9 9 H 1.07998 * 119.99721 * 0.02562 * 8 7 6
10 10 C 1.37880 * 119.99850 * 180.02562 * 8 7 6
11 11 N 1.31513 * 119.99639 * 179.97438 * 10 8 7
12 12 Si 1.86796 * 119.99704 * 0.02562 * 10 8 7
13 13 H 1.48498 * 109.47527 * 89.99985 * 12 10 8
14 14 H 1.48503 * 109.46701 * 209.99660 * 12 10 8
15 15 H 1.48497 * 109.47342 * 329.99388 * 12 10 8
16 16 C 1.38931 * 119.99878 * 90.00197 * 6 5 4
17 17 C 1.39426 * 119.98973 * 5.00384 * 16 6 5
18 18 N 1.31792 * 120.01221 * 179.97438 * 17 16 6
19 19 C 1.33041 * 120.00187 * 359.97438 * 18 17 16
20 20 C 1.48394 * 120.01280 * 179.97438 * 19 18 17
21 21 N 1.34071 * 126.67836 * 180.02562 * 20 19 18
22 22 N 1.28980 * 107.26779 * 180.02562 * 21 20 19
23 23 N 1.28731 * 108.94831 * 359.97438 * 22 21 20
24 24 H 0.97004 * 125.33500 * 179.97438 * 23 22 21
25 25 N 1.28868 * 109.32660 * 359.73077 * 23 22 21
26 26 C 1.39247 * 119.97672 * 0.02562 * 19 18 17
27 27 N 1.32088 * 119.98769 * 359.73672 * 26 19 18
28 28 H 1.08994 * 109.46948 * 179.97438 * 1 2 3
29 29 H 1.09005 * 109.46227 * 299.99751 * 1 2 3
30 30 H 1.08996 * 109.47271 * 59.99107 * 1 2 3
31 31 H 1.09008 * 109.46731 * 240.00275 * 2 1 3
32 32 H 1.09000 * 109.47476 * 180.02562 * 3 2 1
33 33 H 1.08996 * 109.47654 * 300.00659 * 3 2 1
34 34 H 1.09005 * 109.47243 * 60.00872 * 3 2 1
35 35 H 1.09001 * 109.46652 * 304.99694 * 4 2 1
36 36 H 1.08992 * 109.47514 * 184.99783 * 4 2 1
37 37 H 1.09002 * 109.47398 * 300.00496 * 5 4 2
38 38 H 1.09001 * 109.47194 * 60.00677 * 5 4 2
39 39 H 1.08992 * 109.47334 * 209.99920 * 7 6 5
40 40 H 1.08994 * 109.46680 * 330.00544 * 7 6 5
41 41 H 0.96999 * 119.99319 * 179.97438 * 11 10 8
42 42 H 1.07999 * 119.99428 * 359.94605 * 17 16 6
43 43 H 1.08002 * 120.00952 * 179.97438 * 26 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0401 -0.7213 1.2491
5 6 1.6353 -2.1955 1.1878
6 7 2.1232 -2.8861 2.3841
7 6 3.4514 -3.5042 2.3827
8 6 4.4729 -2.5009 2.8529
9 1 4.1635 -1.5028 3.1259
10 6 5.8023 -2.8571 2.9346
11 7 6.6937 -1.9814 3.3444
12 14 6.3374 -4.5832 2.4617
13 1 6.6734 -4.6187 1.0157
14 1 7.5316 -4.9665 3.2569
15 1 5.2327 -5.5367 2.7368
16 6 1.3263 -2.9548 3.5201
17 6 0.0235 -2.4590 3.4885
18 7 -0.7330 -2.5244 4.5657
19 6 -0.2539 -3.0641 5.6833
20 6 -1.1053 -3.1374 6.8965
21 7 -0.7611 -3.6496 8.0867
22 7 -1.7796 -3.5218 8.8676
23 7 -2.7358 -2.9552 8.2180
24 1 -3.6116 -2.7453 8.5785
25 7 -2.3454 -2.7061 7.0154
26 6 1.0472 -3.5593 5.7146
27 7 1.8033 -3.4976 4.6333
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3632 0.5138 0.8901
30 1 -0.3633 0.5139 -0.8899
31 1 1.8933 -0.5138 -0.8901
32 1 3.1301 1.4424 -0.0005
33 1 1.6767 1.9564 -0.8899
34 1 1.6769 1.9563 0.8901
35 1 1.6055 -0.2618 2.1369
36 1 3.1264 -0.6445 1.2950
37 1 0.5489 -2.2724 1.1419
38 1 2.0698 -2.6550 0.3000
39 1 3.4525 -4.3646 3.0519
40 1 3.6997 -3.8293 1.3724
41 1 7.6290 -2.2322 3.4022
42 1 -0.3655 -2.0208 2.5813
43 1 1.4369 -3.9971 6.6218
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001603282732.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:38:36
Heat of formation + Delta-G solvation = 150.947332 kcal
Electronic energy + Delta-G solvation = -26187.044838 eV
Core-core repulsion = 22497.715844 eV
Total energy + Delta-G solvation = -3689.328994 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.166 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-45.42590 -42.00482 -38.93104 -36.84965 -35.41921 -35.15462 -34.66523 -34.17355
-31.63767 -30.95240 -28.83687 -27.91800 -26.33130 -25.94554 -25.14657 -23.93914
-23.78996 -22.05862 -20.82211 -20.29862 -18.98526 -18.56544 -18.43668 -18.12942
-17.56646 -16.55383 -16.20520 -15.94271 -15.73685 -15.30929 -15.07881 -14.92634
-14.59294 -14.41253 -14.30942 -13.69494 -13.63982 -13.42460 -13.22458 -13.01741
-12.73235 -12.61914 -12.52422 -12.34069 -12.29216 -12.16202 -12.07887 -11.99077
-11.81345 -11.71848 -11.65308 -11.41786 -11.29585 -10.73155 -10.63992 -10.03629
-8.49651 -8.24243 -6.27232 -0.38561 0.15293 0.23637 1.26151 1.37004
1.41102 1.43356 1.50618 1.98271 2.37386 2.46888 2.87551 3.01851
3.10611 3.41915 3.51137 3.74800 3.97072 4.00957 4.13609 4.17549
4.26963 4.27352 4.50844 4.51574 4.63270 4.69099 4.77763 4.85980
4.88756 4.93231 5.01005 5.11409 5.18118 5.22165 5.28446 5.40105
5.53552 5.58859 5.59765 5.66267 5.89879 6.11399 6.40652 6.55512
6.74645 7.00677 7.15951 7.35232 8.92250
Molecular weight = 317.17amu
Principal moments of inertia in cm(-1)
A = 0.009811 B = 0.004268 C = 0.003190
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2853.393378 B = 6558.677364 C = 8776.018268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.088 4.088
3 C -0.147 4.147
4 C -0.126 4.126
5 C 0.119 3.881
6 N -0.568 5.568
7 C 0.229 3.771
8 C -0.514 4.514
9 H 0.031 0.969
10 C 0.013 3.987
11 N -0.949 5.949
12 Si 0.940 3.060
13 H -0.260 1.260
14 H -0.289 1.289
15 H -0.249 1.249
16 C 0.372 3.628
17 C -0.005 4.005
18 N -0.378 5.378
19 C 0.034 3.966
20 C 0.236 3.764
21 N -0.288 5.288
22 N -0.052 5.052
23 N -0.200 5.200
24 H 0.495 0.505
25 N -0.280 5.280
26 C 0.159 3.841
27 N -0.522 5.522
28 H 0.069 0.931
29 H 0.051 0.949
30 H 0.066 0.934
31 H 0.079 0.921
32 H 0.037 0.963
33 H 0.071 0.929
34 H 0.046 0.954
35 H 0.045 0.955
36 H 0.041 0.959
37 H 0.107 0.893
38 H 0.095 0.905
39 H 0.034 0.966
40 H 0.045 0.955
41 H 0.264 0.736
42 H 0.198 0.802
43 H 0.184 0.816
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.981 -0.634 -1.968 20.087
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.107 4.107
3 C -0.204 4.204
4 C -0.165 4.165
5 C -0.003 4.003
6 N -0.274 5.274
7 C 0.107 3.893
8 C -0.553 4.553
9 H 0.049 0.951
10 C -0.184 4.184
11 N -0.589 5.589
12 Si 0.764 3.236
13 H -0.185 1.185
14 H -0.215 1.215
15 H -0.172 1.172
16 C 0.130 3.870
17 C -0.178 4.178
18 N -0.092 5.092
19 C -0.108 4.108
20 C -0.045 4.045
21 N -0.162 5.162
22 N -0.047 5.047
23 N -0.052 5.052
24 H 0.354 0.646
25 N -0.133 5.133
26 C -0.006 4.006
27 N -0.244 5.244
28 H 0.088 0.912
29 H 0.070 0.930
30 H 0.085 0.915
31 H 0.098 0.902
32 H 0.056 0.944
33 H 0.090 0.910
34 H 0.066 0.934
35 H 0.064 0.936
36 H 0.060 0.940
37 H 0.125 0.875
38 H 0.113 0.887
39 H 0.052 0.948
40 H 0.063 0.937
41 H 0.073 0.927
42 H 0.214 0.786
43 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges -19.801 -0.772 -1.510 19.873
hybrid contribution 0.817 0.011 0.147 0.830
sum -18.984 -0.760 -1.363 19.048
Atomic orbital electron populations
1.21907 0.93548 1.02719 1.02207 1.21045 0.96997 0.95710 0.96972
1.21824 1.00240 0.96412 1.01946 1.22005 1.00713 0.95367 0.98372
1.21957 1.00688 0.91737 0.85905 1.47002 1.15773 1.54536 1.10066
1.19485 0.79300 0.93248 0.97286 1.21453 0.91890 0.98333 1.43587
0.95109 1.25728 0.96613 1.01207 0.94864 1.70059 1.02497 1.37051
1.49338 0.85829 0.78472 0.80357 0.78988 1.18476 1.21524 1.17227
1.19891 0.89791 0.89715 0.87597 1.23352 0.89879 1.05848 0.98751
1.67951 1.34946 1.08390 0.97921 1.18262 0.92710 1.09212 0.90605
1.22770 0.89369 0.98995 0.93377 1.76067 1.19521 1.20276 1.00288
1.78813 0.92793 1.11861 1.21230 1.47811 1.16456 1.36070 1.04837
0.64584 1.75072 1.13851 1.21887 1.02513 1.23593 0.88843 0.91636
0.96539 1.68283 1.35892 1.20792 0.99413 0.91203 0.93020 0.91459
0.90242 0.94355 0.90989 0.93440 0.93621 0.93967 0.87534 0.88688
0.94760 0.93707 0.92684 0.78558 0.79955
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.45 8.95 71.98 0.64 -1.80 16
2 C -0.09 -1.94 2.92 -10.80 -0.03 -1.97 16
3 C -0.15 -3.37 9.19 71.98 0.66 -2.71 16
4 C -0.13 -3.75 5.01 30.59 0.15 -3.60 16
5 C 0.12 3.25 5.06 86.38 0.44 3.69 16
6 N -0.57 -21.01 2.57 -707.73 -1.82 -22.83 16
7 C 0.23 10.18 4.26 85.63 0.37 10.54 16
8 C -0.51 -28.19 9.48 25.60 0.24 -27.95 16
9 H 0.03 1.93 7.67 -2.91 -0.02 1.91 16
10 C 0.01 0.75 5.47 84.66 0.46 1.21 16
11 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16
12 Si 0.94 42.69 27.47 68.60 1.88 44.58 16
13 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16
14 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16
15 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16
16 C 0.37 13.78 7.37 133.06 0.98 14.76 16
17 C 0.00 -0.15 10.42 84.99 0.89 0.74 16
18 N -0.38 -12.25 10.43 -183.68 -1.92 -14.16 16
19 C 0.03 1.12 6.75 41.91 0.28 1.40 16
20 C 0.24 7.05 8.04 137.34 1.10 8.15 16
21 N -0.29 -8.29 12.22 -52.21 -0.64 -8.93 16
22 N -0.05 -1.20 13.47 37.02 0.50 -0.70 16
23 N -0.20 -3.49 7.90 37.02 0.29 -3.20 16
24 H 0.49 3.07 8.96 -347.53 -3.12 -0.04 16
25 N -0.28 -7.04 12.39 -52.15 -0.65 -7.69 16
26 C 0.16 5.60 10.87 84.90 0.92 6.53 16
27 N -0.52 -21.30 9.32 -191.83 -1.79 -23.09 16
28 H 0.07 0.97 6.57 -2.39 -0.02 0.96 16
29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16
30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16
32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16
33 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16
34 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16
35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
36 H 0.04 1.65 7.26 -2.39 -0.02 1.63 16
37 H 0.11 2.14 4.41 -2.39 -0.01 2.13 16
38 H 0.09 2.36 7.89 -2.39 -0.02 2.34 16
39 H 0.03 1.62 6.52 -2.39 -0.02 1.60 16
40 H 0.05 1.83 7.32 -2.39 -0.02 1.82 16
41 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16
42 H 0.20 4.59 6.02 -2.91 -0.02 4.57 16
43 H 0.18 5.75 7.87 -2.91 -0.02 5.72 16
Total: -1.00 -73.89 360.07 1.17 -72.72
By element:
Atomic # 1 Polarization: 14.71 SS G_CDS: -2.12 Total: 12.60 kcal
Atomic # 6 Polarization: 1.88 SS G_CDS: 7.11 Total: 8.99 kcal
Atomic # 7 Polarization: -133.17 SS G_CDS: -5.72 Total: -138.89 kcal
Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.58 kcal
Total: -73.89 1.17 -72.72 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001603282732.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 223.670 kcal
(2) G-P(sol) polarization free energy of solvation -73.888 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.782 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal
(6) G-S(sol) free energy of system = (1) + (5) 150.947 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds