Wall clock time and date at job start Tue Mar 31 2020 11:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.53001 * 109.47596 * 120.00540 * 2 1 3 5 5 C 1.53000 * 109.46886 * 64.99349 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.46504 * 120.00381 * 269.99975 * 6 5 4 8 8 C 1.50704 * 109.46773 * 90.00257 * 7 6 5 9 9 H 1.07998 * 119.99721 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99850 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99639 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 119.99704 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47527 * 89.99985 * 12 10 8 14 14 H 1.48503 * 109.46701 * 209.99660 * 12 10 8 15 15 H 1.48497 * 109.47342 * 329.99388 * 12 10 8 16 16 C 1.38931 * 119.99878 * 90.00197 * 6 5 4 17 17 C 1.39426 * 119.98973 * 5.00384 * 16 6 5 18 18 N 1.31792 * 120.01221 * 179.97438 * 17 16 6 19 19 C 1.33041 * 120.00187 * 359.97438 * 18 17 16 20 20 C 1.48394 * 120.01280 * 179.97438 * 19 18 17 21 21 N 1.34071 * 126.67836 * 180.02562 * 20 19 18 22 22 N 1.28980 * 107.26779 * 180.02562 * 21 20 19 23 23 N 1.28731 * 108.94831 * 359.97438 * 22 21 20 24 24 H 0.97004 * 125.33500 * 179.97438 * 23 22 21 25 25 N 1.28868 * 109.32660 * 359.73077 * 23 22 21 26 26 C 1.39247 * 119.97672 * 0.02562 * 19 18 17 27 27 N 1.32088 * 119.98769 * 359.73672 * 26 19 18 28 28 H 1.08994 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46227 * 299.99751 * 1 2 3 30 30 H 1.08996 * 109.47271 * 59.99107 * 1 2 3 31 31 H 1.09008 * 109.46731 * 240.00275 * 2 1 3 32 32 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47654 * 300.00659 * 3 2 1 34 34 H 1.09005 * 109.47243 * 60.00872 * 3 2 1 35 35 H 1.09001 * 109.46652 * 304.99694 * 4 2 1 36 36 H 1.08992 * 109.47514 * 184.99783 * 4 2 1 37 37 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 38 38 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 39 39 H 1.08992 * 109.47334 * 209.99920 * 7 6 5 40 40 H 1.08994 * 109.46680 * 330.00544 * 7 6 5 41 41 H 0.96999 * 119.99319 * 179.97438 * 11 10 8 42 42 H 1.07999 * 119.99428 * 359.94605 * 17 16 6 43 43 H 1.08002 * 120.00952 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3841 7 6 3.4514 -3.5042 2.3827 8 6 4.4729 -2.5009 2.8529 9 1 4.1635 -1.5028 3.1259 10 6 5.8023 -2.8571 2.9346 11 7 6.6937 -1.9814 3.3444 12 14 6.3374 -4.5832 2.4617 13 1 6.6734 -4.6187 1.0157 14 1 7.5316 -4.9665 3.2569 15 1 5.2327 -5.5367 2.7368 16 6 1.3263 -2.9548 3.5201 17 6 0.0235 -2.4590 3.4885 18 7 -0.7330 -2.5244 4.5657 19 6 -0.2539 -3.0641 5.6833 20 6 -1.1053 -3.1374 6.8965 21 7 -0.7611 -3.6496 8.0867 22 7 -1.7796 -3.5218 8.8676 23 7 -2.7358 -2.9552 8.2180 24 1 -3.6116 -2.7453 8.5785 25 7 -2.3454 -2.7061 7.0154 26 6 1.0472 -3.5593 5.7146 27 7 1.8033 -3.4976 4.6333 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6769 1.9563 0.8901 35 1 1.6055 -0.2618 2.1369 36 1 3.1264 -0.6445 1.2950 37 1 0.5489 -2.2724 1.1419 38 1 2.0698 -2.6550 0.3000 39 1 3.4525 -4.3646 3.0519 40 1 3.6997 -3.8293 1.3724 41 1 7.6290 -2.2322 3.4022 42 1 -0.3655 -2.0208 2.5813 43 1 1.4369 -3.9971 6.6218 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603282732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:36 Heat of formation + Delta-G solvation = 150.947332 kcal Electronic energy + Delta-G solvation = -26187.044838 eV Core-core repulsion = 22497.715844 eV Total energy + Delta-G solvation = -3689.328994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.42590 -42.00482 -38.93104 -36.84965 -35.41921 -35.15462 -34.66523 -34.17355 -31.63767 -30.95240 -28.83687 -27.91800 -26.33130 -25.94554 -25.14657 -23.93914 -23.78996 -22.05862 -20.82211 -20.29862 -18.98526 -18.56544 -18.43668 -18.12942 -17.56646 -16.55383 -16.20520 -15.94271 -15.73685 -15.30929 -15.07881 -14.92634 -14.59294 -14.41253 -14.30942 -13.69494 -13.63982 -13.42460 -13.22458 -13.01741 -12.73235 -12.61914 -12.52422 -12.34069 -12.29216 -12.16202 -12.07887 -11.99077 -11.81345 -11.71848 -11.65308 -11.41786 -11.29585 -10.73155 -10.63992 -10.03629 -8.49651 -8.24243 -6.27232 -0.38561 0.15293 0.23637 1.26151 1.37004 1.41102 1.43356 1.50618 1.98271 2.37386 2.46888 2.87551 3.01851 3.10611 3.41915 3.51137 3.74800 3.97072 4.00957 4.13609 4.17549 4.26963 4.27352 4.50844 4.51574 4.63270 4.69099 4.77763 4.85980 4.88756 4.93231 5.01005 5.11409 5.18118 5.22165 5.28446 5.40105 5.53552 5.58859 5.59765 5.66267 5.89879 6.11399 6.40652 6.55512 6.74645 7.00677 7.15951 7.35232 8.92250 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.004268 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.393378 B = 6558.677364 C = 8776.018268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.126 4.126 5 C 0.119 3.881 6 N -0.568 5.568 7 C 0.229 3.771 8 C -0.514 4.514 9 H 0.031 0.969 10 C 0.013 3.987 11 N -0.949 5.949 12 Si 0.940 3.060 13 H -0.260 1.260 14 H -0.289 1.289 15 H -0.249 1.249 16 C 0.372 3.628 17 C -0.005 4.005 18 N -0.378 5.378 19 C 0.034 3.966 20 C 0.236 3.764 21 N -0.288 5.288 22 N -0.052 5.052 23 N -0.200 5.200 24 H 0.495 0.505 25 N -0.280 5.280 26 C 0.159 3.841 27 N -0.522 5.522 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.034 0.966 40 H 0.045 0.955 41 H 0.264 0.736 42 H 0.198 0.802 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.981 -0.634 -1.968 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.165 4.165 5 C -0.003 4.003 6 N -0.274 5.274 7 C 0.107 3.893 8 C -0.553 4.553 9 H 0.049 0.951 10 C -0.184 4.184 11 N -0.589 5.589 12 Si 0.764 3.236 13 H -0.185 1.185 14 H -0.215 1.215 15 H -0.172 1.172 16 C 0.130 3.870 17 C -0.178 4.178 18 N -0.092 5.092 19 C -0.108 4.108 20 C -0.045 4.045 21 N -0.162 5.162 22 N -0.047 5.047 23 N -0.052 5.052 24 H 0.354 0.646 25 N -0.133 5.133 26 C -0.006 4.006 27 N -0.244 5.244 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.214 0.786 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.801 -0.772 -1.510 19.873 hybrid contribution 0.817 0.011 0.147 0.830 sum -18.984 -0.760 -1.363 19.048 Atomic orbital electron populations 1.21907 0.93548 1.02719 1.02207 1.21045 0.96997 0.95710 0.96972 1.21824 1.00240 0.96412 1.01946 1.22005 1.00713 0.95367 0.98372 1.21957 1.00688 0.91737 0.85905 1.47002 1.15773 1.54536 1.10066 1.19485 0.79300 0.93248 0.97286 1.21453 0.91890 0.98333 1.43587 0.95109 1.25728 0.96613 1.01207 0.94864 1.70059 1.02497 1.37051 1.49338 0.85829 0.78472 0.80357 0.78988 1.18476 1.21524 1.17227 1.19891 0.89791 0.89715 0.87597 1.23352 0.89879 1.05848 0.98751 1.67951 1.34946 1.08390 0.97921 1.18262 0.92710 1.09212 0.90605 1.22770 0.89369 0.98995 0.93377 1.76067 1.19521 1.20276 1.00288 1.78813 0.92793 1.11861 1.21230 1.47811 1.16456 1.36070 1.04837 0.64584 1.75072 1.13851 1.21887 1.02513 1.23593 0.88843 0.91636 0.96539 1.68283 1.35892 1.20792 0.99413 0.91203 0.93020 0.91459 0.90242 0.94355 0.90989 0.93440 0.93621 0.93967 0.87534 0.88688 0.94760 0.93707 0.92684 0.78558 0.79955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.95 71.98 0.64 -1.80 16 2 C -0.09 -1.94 2.92 -10.80 -0.03 -1.97 16 3 C -0.15 -3.37 9.19 71.98 0.66 -2.71 16 4 C -0.13 -3.75 5.01 30.59 0.15 -3.60 16 5 C 0.12 3.25 5.06 86.38 0.44 3.69 16 6 N -0.57 -21.01 2.57 -707.73 -1.82 -22.83 16 7 C 0.23 10.18 4.26 85.63 0.37 10.54 16 8 C -0.51 -28.19 9.48 25.60 0.24 -27.95 16 9 H 0.03 1.93 7.67 -2.91 -0.02 1.91 16 10 C 0.01 0.75 5.47 84.66 0.46 1.21 16 11 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 12 Si 0.94 42.69 27.47 68.60 1.88 44.58 16 13 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 14 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 15 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 16 C 0.37 13.78 7.37 133.06 0.98 14.76 16 17 C 0.00 -0.15 10.42 84.99 0.89 0.74 16 18 N -0.38 -12.25 10.43 -183.68 -1.92 -14.16 16 19 C 0.03 1.12 6.75 41.91 0.28 1.40 16 20 C 0.24 7.05 8.04 137.34 1.10 8.15 16 21 N -0.29 -8.29 12.22 -52.21 -0.64 -8.93 16 22 N -0.05 -1.20 13.47 37.02 0.50 -0.70 16 23 N -0.20 -3.49 7.90 37.02 0.29 -3.20 16 24 H 0.49 3.07 8.96 -347.53 -3.12 -0.04 16 25 N -0.28 -7.04 12.39 -52.15 -0.65 -7.69 16 26 C 0.16 5.60 10.87 84.90 0.92 6.53 16 27 N -0.52 -21.30 9.32 -191.83 -1.79 -23.09 16 28 H 0.07 0.97 6.57 -2.39 -0.02 0.96 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.04 1.65 7.26 -2.39 -0.02 1.63 16 37 H 0.11 2.14 4.41 -2.39 -0.01 2.13 16 38 H 0.09 2.36 7.89 -2.39 -0.02 2.34 16 39 H 0.03 1.62 6.52 -2.39 -0.02 1.60 16 40 H 0.05 1.83 7.32 -2.39 -0.02 1.82 16 41 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.20 4.59 6.02 -2.91 -0.02 4.57 16 43 H 0.18 5.75 7.87 -2.91 -0.02 5.72 16 Total: -1.00 -73.89 360.07 1.17 -72.72 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -2.12 Total: 12.60 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 7.11 Total: 8.99 kcal Atomic # 7 Polarization: -133.17 SS G_CDS: -5.72 Total: -138.89 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.58 kcal Total: -73.89 1.17 -72.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603282732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.670 kcal (2) G-P(sol) polarization free energy of solvation -73.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds