Wall clock time and date at job start Tue Mar 31 2020 12:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 C 1.50695 * 109.47164 * 119.99593 * 2 1 3 5 5 H 1.07999 * 119.99968 * 123.16545 * 4 2 1 6 6 C 1.37880 * 120.00064 * 303.16674 * 4 2 1 7 7 N 1.31518 * 119.99986 * 164.11268 * 6 4 2 8 8 Si 1.86796 * 120.00048 * 344.10612 * 6 4 2 9 9 H 1.48505 * 109.47437 * 269.13742 * 8 6 4 10 10 H 1.48507 * 109.47171 * 29.13648 * 8 6 4 11 11 H 1.48502 * 109.47175 * 149.13756 * 8 6 4 12 12 C 1.53002 * 109.47232 * 240.00079 * 2 1 3 13 13 N 1.46898 * 109.47080 * 59.99672 * 12 2 1 14 14 C 1.46905 * 110.99518 * 184.92623 * 13 12 2 15 15 H 1.09000 * 109.25050 * 327.06922 * 14 13 12 16 16 C 1.52731 * 109.24774 * 86.52849 * 14 13 12 17 17 C 1.53332 * 108.35509 * 171.38279 * 16 14 13 18 18 C 1.52718 * 108.37047 * 290.00265 * 17 16 14 19 19 C 1.50693 * 110.60741 * 51.14345 * 18 17 16 20 20 C 1.39080 * 117.60025 * 162.48314 * 19 18 17 21 21 C 1.37611 * 120.76842 * 179.76117 * 20 19 18 22 22 C 1.39661 * 119.60952 * 0.02562 * 21 20 19 23 23 C 1.47727 * 120.27424 * 180.12551 * 22 21 20 24 24 O 1.21471 * 120.00137 * 180.02562 * 23 22 21 25 25 O 1.34709 * 120.00010 * 0.02562 * 23 22 21 26 26 C 1.39308 * 119.44785 * 0.10792 * 22 21 20 27 27 C 1.37792 * 122.47587 * 342.38622 * 19 18 17 28 28 H 1.08995 * 109.46862 * 291.19487 * 1 2 3 29 29 H 1.09001 * 109.46683 * 51.19209 * 1 2 3 30 30 H 1.09001 * 109.46850 * 171.19223 * 1 2 3 31 31 H 1.09009 * 109.47022 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47013 * 299.99207 * 3 2 1 33 33 H 1.08997 * 109.47652 * 59.99738 * 3 2 1 34 34 H 0.97000 * 119.99677 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47199 * 180.02562 * 12 2 1 36 36 H 1.08998 * 109.46525 * 299.99715 * 12 2 1 37 37 H 1.00899 * 111.00046 * 60.97974 * 13 12 2 38 38 H 1.08998 * 109.68708 * 291.09904 * 16 14 13 39 39 H 1.08999 * 109.68513 * 51.66834 * 16 14 13 40 40 H 1.08996 * 109.68329 * 49.72475 * 17 16 14 41 41 H 1.08999 * 109.67873 * 170.28445 * 17 16 14 42 42 H 1.09002 * 109.25149 * 171.42986 * 18 17 16 43 43 H 1.08997 * 109.25340 * 290.85552 * 18 17 16 44 44 H 1.08001 * 119.61988 * 359.78573 * 20 19 18 45 45 H 1.07999 * 120.19537 * 179.97438 * 21 20 19 46 46 H 0.96706 * 117.00139 * 179.97438 * 25 23 22 47 47 H 1.08001 * 119.78088 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6948 -1.5576 1.1323 6 6 1.6463 -0.2785 2.4817 7 7 1.8148 -1.0580 3.5274 8 14 0.8840 1.4139 2.6916 9 1 1.9522 2.4068 2.9714 10 1 0.1698 1.7931 1.4460 11 1 -0.0761 1.3874 3.8242 12 6 2.0401 -0.7212 -1.2493 13 7 1.5503 -0.0288 -2.4487 14 6 1.9229 -0.7596 -3.6674 15 1 2.8842 -1.2496 -3.5128 16 6 0.8612 -1.8164 -3.9651 17 6 1.1512 -2.4165 -5.3460 18 6 0.8516 -1.3565 -6.4039 19 6 1.5509 -0.0635 -6.0720 20 6 1.6946 0.8714 -7.0916 21 6 2.3183 2.0759 -6.8595 22 6 2.8130 2.3625 -5.5853 23 6 3.4825 3.6522 -5.3190 24 8 3.9114 3.8961 -4.2090 25 8 3.6175 4.5577 -6.3072 26 6 2.6695 1.4223 -4.5674 27 6 2.0388 0.2118 -4.8131 28 1 -0.3633 0.3715 0.9581 29 1 -0.3633 0.6441 -0.8008 30 1 -0.3633 -1.0156 -0.1574 31 1 3.1301 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9565 0.8899 34 1 1.5429 -0.7543 4.4076 35 1 3.1301 -0.7216 -1.2490 36 1 1.6767 -1.7489 -1.2492 37 1 1.8869 0.9219 -2.4801 38 1 0.9008 -2.6000 -3.2085 39 1 -0.1263 -1.3549 -3.9652 40 1 2.1993 -2.7095 -5.4063 41 1 0.5160 -3.2872 -5.5086 42 1 1.1950 -1.7115 -7.3756 43 1 -0.2237 -1.1833 -6.4447 44 1 1.3121 0.6497 -8.0770 45 1 2.4252 2.7950 -7.6581 46 1 4.0622 5.3871 -6.0849 47 1 3.0504 1.6382 -3.5801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603575953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:21 Heat of formation + Delta-G solvation = -59.342761 kcal Electronic energy + Delta-G solvation = -27212.524674 eV Core-core repulsion = 23553.031659 eV Total energy + Delta-G solvation = -3659.493015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85277 -39.80631 -37.34611 -36.32432 -35.95820 -34.14588 -31.83050 -30.88729 -30.57429 -28.25700 -26.13719 -25.24974 -24.97433 -24.25508 -22.96663 -21.97230 -21.35434 -19.61797 -18.79231 -18.08005 -17.49684 -16.14944 -15.95610 -15.80804 -15.63564 -15.48224 -15.04521 -14.58768 -14.41325 -14.09964 -13.53247 -13.43240 -13.29715 -13.00888 -12.81266 -12.70159 -12.49004 -12.19256 -12.03168 -11.91303 -11.72808 -11.70362 -11.61945 -11.06957 -10.99054 -10.91698 -10.65434 -10.39381 -10.22426 -10.02524 -9.93245 -9.74717 -9.14418 -8.99408 -8.89479 -8.46651 -8.29835 -7.85646 -6.05244 -3.99401 0.47968 1.11651 2.33809 2.77966 3.36082 3.46235 3.47812 3.51336 4.38624 4.42922 4.48650 4.54726 4.61895 4.79630 4.94080 4.99519 5.07091 5.12644 5.28155 5.32079 5.38923 5.52733 5.62393 5.68617 5.73309 5.83718 5.85957 6.01631 6.03892 6.10698 6.13591 6.22717 6.26045 6.33509 6.36321 6.43963 6.55190 6.62287 6.66353 6.80295 6.91171 6.98743 7.10691 7.44998 7.50363 7.63218 7.68024 7.83337 7.94791 8.58555 9.00224 9.62283 11.08114 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.004090 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.559928 B = 6844.069623 C = 8546.251283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.042 3.958 3 C -0.149 4.149 4 C -0.513 4.513 5 H 0.070 0.930 6 C 0.076 3.924 7 N -0.896 5.896 8 Si 0.872 3.128 9 H -0.289 1.289 10 H -0.237 1.237 11 H -0.304 1.304 12 C 0.083 3.917 13 N -0.685 5.685 14 C 0.125 3.875 15 H 0.056 0.944 16 C -0.107 4.107 17 C -0.121 4.121 18 C -0.085 4.085 19 C -0.031 4.031 20 C -0.137 4.137 21 C -0.066 4.066 22 C -0.131 4.131 23 C 0.525 3.475 24 O -0.508 6.508 25 O -0.515 6.515 26 C -0.051 4.051 27 C -0.079 4.079 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.022 0.978 36 H 0.067 0.933 37 H 0.338 0.662 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.130 0.870 45 H 0.136 0.864 46 H 0.413 0.587 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 4.000 -25.355 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.041 3.959 3 C -0.206 4.206 4 C -0.551 4.551 5 H 0.088 0.912 6 C -0.126 4.126 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.216 1.216 10 H -0.162 1.162 11 H -0.232 1.232 12 C -0.045 4.045 13 N -0.319 5.319 14 C 0.015 3.985 15 H 0.074 0.926 16 C -0.145 4.145 17 C -0.159 4.159 18 C -0.122 4.122 19 C -0.031 4.031 20 C -0.155 4.155 21 C -0.084 4.084 22 C -0.133 4.133 23 C 0.369 3.631 24 O -0.397 6.397 25 O -0.327 6.327 26 C -0.070 4.070 27 C -0.080 4.080 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.159 0.841 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.148 0.852 45 H 0.154 0.846 46 H 0.272 0.728 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.131 3.392 -24.896 25.152 hybrid contribution 1.034 1.841 0.515 2.173 sum -0.097 5.234 -24.382 24.937 Atomic orbital electron populations 1.22075 0.97421 0.99653 0.99104 1.18451 0.92878 0.91555 0.92996 1.22388 1.00224 0.99072 0.98951 1.20843 1.30181 1.15385 0.88647 0.91162 1.24945 0.94762 0.96966 0.95931 1.69991 1.48116 1.35529 0.99661 0.87562 0.79341 0.85692 0.77075 1.21626 1.16238 1.23241 1.22044 0.95971 0.97957 0.88489 1.60822 1.64562 1.05637 1.00849 1.20364 0.97595 0.92751 0.87763 0.92600 1.21565 0.99489 0.97564 0.95863 1.21589 1.01991 0.97556 0.94800 1.20598 1.00324 0.91754 0.99494 1.19953 0.94926 0.95959 0.92299 1.21138 1.01174 0.93794 0.99362 1.21302 0.94819 0.96745 0.95544 1.18854 1.05894 0.92629 0.95873 1.20934 0.76239 0.84146 0.81737 1.90937 1.46360 1.78318 1.24061 1.84537 1.74658 1.30552 1.42923 1.21305 0.95046 0.91834 0.98771 1.19750 0.98349 0.94982 0.94869 0.93973 0.94823 0.94129 0.93710 0.94991 0.93969 0.92824 0.96009 0.91456 0.84068 0.90990 0.90594 0.91695 0.91047 0.90496 0.89878 0.85234 0.84588 0.72789 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 7.47 37.16 0.28 -2.52 16 2 C 0.04 0.97 0.57 -155.66 -0.09 0.89 16 3 C -0.15 -3.30 7.43 37.16 0.28 -3.03 16 4 C -0.51 -14.23 8.61 -34.44 -0.30 -14.53 16 5 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 6 C 0.08 2.19 5.30 -17.82 -0.09 2.10 16 7 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 8 Si 0.87 22.07 22.95 -169.99 -3.90 18.17 16 9 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 10 H -0.24 -5.59 4.39 56.52 0.25 -5.34 16 11 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 12 C 0.08 1.64 4.33 -3.82 -0.02 1.62 16 13 N -0.68 -11.30 5.61 -108.12 -0.61 -11.91 16 14 C 0.12 1.70 2.52 -69.02 -0.17 1.53 16 15 H 0.06 0.79 7.81 -51.93 -0.41 0.38 16 16 C -0.11 -1.28 5.42 -26.70 -0.14 -1.43 16 17 C -0.12 -1.10 5.98 -26.70 -0.16 -1.26 16 18 C -0.08 -0.69 5.66 -28.03 -0.16 -0.85 16 19 C -0.03 -0.32 5.75 -104.48 -0.60 -0.92 16 20 C -0.14 -1.22 9.58 -39.50 -0.38 -1.59 16 21 C -0.07 -0.63 9.62 -39.28 -0.38 -1.01 16 22 C -0.13 -1.58 5.87 -105.09 -0.62 -2.19 16 23 C 0.53 6.43 8.27 34.61 0.29 6.72 16 24 O -0.51 -7.96 17.13 -19.24 -0.33 -8.29 16 25 O -0.51 -4.36 12.70 -40.52 -0.51 -4.88 16 26 C -0.05 -0.68 8.38 -39.02 -0.33 -1.00 16 27 C -0.08 -0.99 5.55 -104.64 -0.58 -1.57 16 28 H 0.04 0.99 3.94 -51.93 -0.20 0.79 16 29 H 0.03 0.69 7.87 -51.93 -0.41 0.28 16 30 H 0.04 0.88 8.12 -51.93 -0.42 0.46 16 31 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.03 0.63 6.69 -51.93 -0.35 0.28 16 33 H 0.04 0.98 2.60 -51.93 -0.13 0.85 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16 37 H 0.34 5.63 4.29 -39.29 -0.17 5.46 16 38 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 39 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.13 0.80 8.05 -52.49 -0.42 0.38 16 45 H 0.14 1.03 7.63 -52.49 -0.40 0.63 16 46 H 0.41 1.72 9.11 45.56 0.42 2.13 16 47 H 0.14 2.01 6.14 -52.49 -0.32 1.68 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -32.97 357.99 -8.63 -41.61 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.28 Total: 5.76 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -3.17 Total: -19.05 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.17 Total: -38.72 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.84 Total: -13.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -3.90 Total: 18.17 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.97 -8.63 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603575953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.737 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds