Wall clock time and date at job start Tue Mar 31 2020 12:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 C 1.50695 * 109.47164 * 119.99593 * 2 1 3 5 5 H 1.07999 * 119.99968 * 123.16545 * 4 2 1 6 6 C 1.37880 * 120.00064 * 303.16674 * 4 2 1 7 7 N 1.31518 * 119.99986 * 164.11268 * 6 4 2 8 8 Si 1.86796 * 120.00048 * 344.10612 * 6 4 2 9 9 H 1.48505 * 109.47437 * 269.13742 * 8 6 4 10 10 H 1.48507 * 109.47171 * 29.13648 * 8 6 4 11 11 H 1.48502 * 109.47175 * 149.13756 * 8 6 4 12 12 C 1.53002 * 109.47232 * 240.00079 * 2 1 3 13 13 N 1.46898 * 109.47080 * 59.99672 * 12 2 1 14 14 C 1.46905 * 110.99518 * 184.92623 * 13 12 2 15 15 H 1.09000 * 109.25050 * 327.06922 * 14 13 12 16 16 C 1.52731 * 109.24774 * 86.52849 * 14 13 12 17 17 C 1.53332 * 108.35509 * 171.38279 * 16 14 13 18 18 C 1.52718 * 108.37047 * 290.00265 * 17 16 14 19 19 C 1.50693 * 110.60741 * 51.14345 * 18 17 16 20 20 C 1.39080 * 117.60025 * 162.48314 * 19 18 17 21 21 C 1.37611 * 120.76842 * 179.76117 * 20 19 18 22 22 C 1.39661 * 119.60952 * 0.02562 * 21 20 19 23 23 C 1.47727 * 120.27424 * 180.12551 * 22 21 20 24 24 O 1.21471 * 120.00137 * 180.02562 * 23 22 21 25 25 O 1.34709 * 120.00010 * 0.02562 * 23 22 21 26 26 C 1.39308 * 119.44785 * 0.10792 * 22 21 20 27 27 C 1.37792 * 122.47587 * 342.38622 * 19 18 17 28 28 H 1.08995 * 109.46862 * 291.19487 * 1 2 3 29 29 H 1.09001 * 109.46683 * 51.19209 * 1 2 3 30 30 H 1.09001 * 109.46850 * 171.19223 * 1 2 3 31 31 H 1.09009 * 109.47022 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47013 * 299.99207 * 3 2 1 33 33 H 1.08997 * 109.47652 * 59.99738 * 3 2 1 34 34 H 0.97000 * 119.99677 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47199 * 180.02562 * 12 2 1 36 36 H 1.08998 * 109.46525 * 299.99715 * 12 2 1 37 37 H 1.00899 * 111.00046 * 60.97974 * 13 12 2 38 38 H 1.08998 * 109.68708 * 291.09904 * 16 14 13 39 39 H 1.08999 * 109.68513 * 51.66834 * 16 14 13 40 40 H 1.08996 * 109.68329 * 49.72475 * 17 16 14 41 41 H 1.08999 * 109.67873 * 170.28445 * 17 16 14 42 42 H 1.09002 * 109.25149 * 171.42986 * 18 17 16 43 43 H 1.08997 * 109.25340 * 290.85552 * 18 17 16 44 44 H 1.08001 * 119.61988 * 359.78573 * 20 19 18 45 45 H 1.07999 * 120.19537 * 179.97438 * 21 20 19 46 46 H 0.96706 * 117.00139 * 179.97438 * 25 23 22 47 47 H 1.08001 * 119.78088 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6948 -1.5576 1.1323 6 6 1.6463 -0.2785 2.4817 7 7 1.8148 -1.0580 3.5274 8 14 0.8840 1.4139 2.6916 9 1 1.9522 2.4068 2.9714 10 1 0.1698 1.7931 1.4460 11 1 -0.0761 1.3874 3.8242 12 6 2.0401 -0.7212 -1.2493 13 7 1.5503 -0.0288 -2.4487 14 6 1.9229 -0.7596 -3.6674 15 1 2.8842 -1.2496 -3.5128 16 6 0.8612 -1.8164 -3.9651 17 6 1.1512 -2.4165 -5.3460 18 6 0.8516 -1.3565 -6.4039 19 6 1.5509 -0.0635 -6.0720 20 6 1.6946 0.8714 -7.0916 21 6 2.3183 2.0759 -6.8595 22 6 2.8130 2.3625 -5.5853 23 6 3.4825 3.6522 -5.3190 24 8 3.9114 3.8961 -4.2090 25 8 3.6175 4.5577 -6.3072 26 6 2.6695 1.4223 -4.5674 27 6 2.0388 0.2118 -4.8131 28 1 -0.3633 0.3715 0.9581 29 1 -0.3633 0.6441 -0.8008 30 1 -0.3633 -1.0156 -0.1574 31 1 3.1301 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9565 0.8899 34 1 1.5429 -0.7543 4.4076 35 1 3.1301 -0.7216 -1.2490 36 1 1.6767 -1.7489 -1.2492 37 1 1.8869 0.9219 -2.4801 38 1 0.9008 -2.6000 -3.2085 39 1 -0.1263 -1.3549 -3.9652 40 1 2.1993 -2.7095 -5.4063 41 1 0.5160 -3.2872 -5.5086 42 1 1.1950 -1.7115 -7.3756 43 1 -0.2237 -1.1833 -6.4447 44 1 1.3121 0.6497 -8.0770 45 1 2.4252 2.7950 -7.6581 46 1 4.0622 5.3871 -6.0849 47 1 3.0504 1.6382 -3.5801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603575953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:20 Heat of formation + Delta-G solvation = -81.437076 kcal Electronic energy + Delta-G solvation = -27213.482756 eV Core-core repulsion = 23553.031659 eV Total energy + Delta-G solvation = -3660.451097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72861 -40.71745 -38.85651 -37.17979 -37.04407 -35.39112 -33.78404 -31.86153 -31.61608 -29.24327 -27.95676 -27.10918 -26.26167 -25.58722 -23.88028 -22.82470 -22.29659 -20.67598 -20.38204 -19.00086 -18.48686 -18.05461 -17.36654 -16.84341 -16.70756 -16.53339 -16.25347 -15.75571 -15.38675 -15.15376 -14.91994 -14.71273 -14.48359 -14.35920 -14.23372 -14.02954 -13.83373 -13.68742 -13.39208 -13.20503 -12.94320 -12.66063 -12.53996 -12.42717 -12.31336 -12.06591 -11.97035 -11.84876 -11.75429 -11.60544 -11.38533 -11.23597 -11.00131 -10.55696 -10.29059 -9.99206 -9.79085 -9.18931 -8.31303 -6.28484 -0.36266 0.29742 1.33001 1.37565 1.45912 1.46677 2.01108 2.34466 2.68159 3.05318 3.30072 3.53323 3.72177 3.81854 4.02584 4.08317 4.15925 4.24192 4.28946 4.37356 4.38864 4.42174 4.54328 4.55517 4.68601 4.80262 4.83649 4.87492 4.92725 5.00693 5.02412 5.06699 5.09717 5.13883 5.16068 5.23771 5.26762 5.32133 5.41366 5.49168 5.52482 5.57712 5.61519 5.74316 5.84713 5.85270 6.15934 6.32480 6.47913 6.76749 6.92014 7.36217 8.85852 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.004090 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.559928 B = 6844.069623 C = 8546.251283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.037 3.963 3 C -0.146 4.146 4 C -0.513 4.513 5 H 0.030 0.970 6 C 0.022 3.978 7 N -0.944 5.944 8 Si 0.926 3.074 9 H -0.289 1.289 10 H -0.205 1.205 11 H -0.308 1.308 12 C 0.098 3.902 13 N -0.681 5.681 14 C 0.125 3.875 15 H 0.044 0.956 16 C -0.105 4.105 17 C -0.116 4.116 18 C -0.082 4.082 19 C -0.029 4.029 20 C -0.127 4.127 21 C -0.055 4.055 22 C -0.149 4.149 23 C 0.530 3.470 24 O -0.554 6.554 25 O -0.499 6.499 26 C -0.071 4.071 27 C -0.095 4.095 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.009 0.991 36 H 0.059 0.941 37 H 0.337 0.663 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.169 0.831 45 H 0.162 0.838 46 H 0.433 0.567 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 5.228 -29.722 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.036 3.964 3 C -0.203 4.203 4 C -0.551 4.551 5 H 0.049 0.951 6 C -0.175 4.175 7 N -0.584 5.584 8 Si 0.755 3.245 9 H -0.217 1.217 10 H -0.128 1.128 11 H -0.237 1.237 12 C -0.031 4.031 13 N -0.315 5.315 14 C 0.015 3.985 15 H 0.062 0.938 16 C -0.143 4.143 17 C -0.154 4.154 18 C -0.119 4.119 19 C -0.029 4.029 20 C -0.145 4.145 21 C -0.073 4.073 22 C -0.150 4.150 23 C 0.376 3.624 24 O -0.447 6.447 25 O -0.313 6.313 26 C -0.090 4.090 27 C -0.096 4.096 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.078 0.922 37 H 0.158 0.842 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.186 0.814 45 H 0.179 0.821 46 H 0.295 0.705 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.727 4.641 -29.324 29.814 hybrid contribution 1.603 1.394 1.753 2.755 sum -1.124 6.035 -27.571 28.246 Atomic orbital electron populations 1.21971 0.96361 1.00078 0.99168 1.18453 0.93611 0.92082 0.92264 1.22305 1.00065 0.98215 0.99708 1.21163 1.28842 1.14289 0.90807 0.95134 1.25722 0.95752 1.00458 0.95609 1.70121 1.50414 1.37597 1.00287 0.86674 0.78714 0.81011 0.78054 1.21705 1.12840 1.23678 1.21690 0.95018 0.97439 0.88909 1.60786 1.64189 1.05612 1.00882 1.20407 0.97626 0.93278 0.87150 0.93848 1.21541 0.98504 0.96588 0.97662 1.21571 1.02333 0.98482 0.93043 1.20686 1.00884 0.90064 1.00232 1.20279 0.93908 0.97278 0.91456 1.21550 0.99763 0.92673 1.00477 1.21624 0.93357 0.97528 0.94802 1.18963 1.06873 0.92416 0.96773 1.21058 0.75299 0.84613 0.81437 1.90918 1.48509 1.79295 1.25957 1.84484 1.74352 1.31126 1.41346 1.21185 0.96412 0.93064 0.98338 1.19632 0.99990 0.94448 0.95504 0.95125 0.92555 0.94326 0.94163 0.92348 0.94792 0.92823 0.97315 0.92225 0.84172 0.92576 0.91092 0.91880 0.89213 0.87522 0.88565 0.81359 0.82067 0.70528 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 7.47 71.98 0.54 -4.65 16 2 C 0.04 1.72 0.57 -52.93 -0.03 1.69 16 3 C -0.15 -6.37 7.43 71.98 0.54 -5.83 16 4 C -0.51 -29.54 8.61 25.60 0.22 -29.31 16 5 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 6 C 0.02 1.30 5.30 84.65 0.45 1.75 16 7 N -0.94 -60.39 13.96 21.45 0.30 -60.09 16 8 Si 0.93 45.93 22.95 68.60 1.57 47.51 16 9 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 10 H -0.20 -9.08 4.39 99.48 0.44 -8.64 16 11 H -0.31 -15.39 7.11 99.48 0.71 -14.69 16 12 C 0.10 3.97 4.33 86.30 0.37 4.34 16 13 N -0.68 -22.56 5.61 -495.97 -2.78 -25.34 16 14 C 0.12 3.38 2.52 44.07 0.11 3.50 16 15 H 0.04 1.27 7.81 -2.39 -0.02 1.25 16 16 C -0.10 -2.42 5.42 30.62 0.17 -2.25 16 17 C -0.12 -1.79 5.98 30.61 0.18 -1.61 16 18 C -0.08 -0.98 5.66 29.75 0.17 -0.81 16 19 C -0.03 -0.49 5.75 -19.77 -0.11 -0.60 16 20 C -0.13 -1.66 9.58 22.32 0.21 -1.45 16 21 C -0.06 -0.85 9.62 22.47 0.22 -0.64 16 22 C -0.15 -3.36 5.87 -20.17 -0.12 -3.48 16 23 C 0.53 12.47 8.27 70.33 0.58 13.06 16 24 O -0.55 -17.62 17.13 19.93 0.34 -17.28 16 25 O -0.50 -7.29 12.70 -56.19 -0.71 -8.00 16 26 C -0.07 -1.88 8.38 22.64 0.19 -1.69 16 27 C -0.10 -2.26 5.55 -19.87 -0.11 -2.38 16 28 H 0.03 1.39 3.94 -2.39 -0.01 1.38 16 29 H 0.06 2.20 7.87 -2.39 -0.02 2.18 16 30 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 31 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.06 2.23 6.69 -2.39 -0.02 2.21 16 33 H 0.03 1.53 2.60 -2.39 -0.01 1.52 16 34 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.06 2.47 7.60 -2.39 -0.02 2.45 16 37 H 0.34 11.30 4.29 -89.69 -0.38 10.92 16 38 H 0.06 1.44 7.70 -2.39 -0.02 1.42 16 39 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 40 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.11 0.73 8.12 -2.39 -0.02 0.71 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.17 0.95 8.05 -2.91 -0.02 0.92 16 45 H 0.16 1.67 7.63 -2.91 -0.02 1.65 16 46 H 0.43 2.63 9.11 -74.05 -0.67 1.95 16 47 H 0.11 3.43 6.14 -2.91 -0.02 3.42 16 Total: -1.00 -75.04 357.99 1.96 -73.07 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.33 Total: 20.50 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 3.57 Total: -30.37 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.48 Total: -85.43 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.37 Total: -25.28 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.57 Total: 47.51 kcal Total: -75.04 1.96 -73.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603575953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.366 kcal (2) G-P(sol) polarization free energy of solvation -75.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds