Wall clock time and date at job start Tue Mar 31 2020 11:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46645 * 2 1 4 4 C 1.52991 * 109.47319 * 239.99929 * 2 1 3 5 5 C 1.53000 * 109.46864 * 119.99622 * 2 1 3 6 6 H 1.08994 * 112.96613 * 194.68681 * 5 2 1 7 7 C 1.53951 * 113.77044 * 63.00838 * 5 2 1 8 8 C 1.53946 * 86.29034 * 221.97982 * 7 5 2 9 9 N 1.47582 * 86.11833 * 23.60755 * 8 7 5 10 10 C 1.34775 * 134.49294 * 155.36538 * 9 8 7 11 11 O 1.21279 * 119.99835 * 184.49080 * 10 9 8 12 12 C 1.50696 * 120.00055 * 4.48017 * 10 9 8 13 13 C 1.50702 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.38304 * 119.93053 * 269.73058 * 13 12 10 15 15 C 1.38101 * 120.06742 * 179.72278 * 14 13 12 16 16 C 1.38885 * 119.92752 * 0.54850 * 15 14 13 17 17 O 1.35749 * 120.06389 * 179.74776 * 16 15 14 18 18 C 1.34831 * 116.99576 * 185.39951 * 17 16 15 19 19 H 1.07991 * 120.00185 * 354.95521 * 18 17 16 20 20 C 1.38654 * 119.99805 * 174.95845 * 18 17 16 21 21 N 1.31558 * 120.00264 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99898 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47069 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47254 * 119.99944 * 22 20 18 25 25 H 1.48502 * 109.46765 * 239.99916 * 22 20 18 26 26 C 1.38879 * 119.86307 * 359.72827 * 16 15 14 27 27 C 1.38095 * 119.92988 * 359.97438 * 26 16 15 28 28 H 1.08994 * 109.47515 * 305.04453 * 1 2 3 29 29 H 1.09003 * 109.47070 * 65.04781 * 1 2 3 30 30 H 1.09002 * 109.47024 * 185.03664 * 1 2 3 31 31 H 1.09006 * 109.46977 * 185.46795 * 3 2 1 32 32 H 1.08997 * 109.47214 * 305.46974 * 3 2 1 33 33 H 1.08997 * 109.47161 * 65.47198 * 3 2 1 34 34 H 1.09005 * 109.47417 * 299.99765 * 4 2 1 35 35 H 1.08998 * 109.47683 * 59.99799 * 4 2 1 36 36 H 1.08997 * 109.47034 * 180.02562 * 4 2 1 37 37 H 1.08999 * 113.73934 * 336.32484 * 7 5 2 38 38 H 1.08993 * 113.74007 * 107.52281 * 7 5 2 39 39 H 1.08999 * 113.76712 * 137.90429 * 8 7 5 40 40 H 1.08999 * 113.76832 * 269.19103 * 8 7 5 41 41 H 1.09001 * 109.47320 * 300.00594 * 12 10 9 42 42 H 1.09002 * 109.46890 * 60.00770 * 12 10 9 43 43 H 1.08005 * 119.96358 * 0.02562 * 14 13 12 44 44 H 1.07999 * 120.03561 * 180.27022 * 15 14 13 45 45 H 0.97003 * 120.00358 * 180.02562 * 21 20 18 46 46 H 1.07997 * 120.03141 * 180.02562 * 26 16 15 47 47 H 1.08000 * 119.96335 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0400 -0.7212 1.2493 6 1 3.0970 -0.5395 1.4436 7 6 1.6439 -2.2075 1.3129 8 6 1.3516 -1.9626 2.8044 9 7 1.1784 -0.5444 2.4345 10 6 0.5043 0.4947 2.9657 11 8 0.4774 1.5598 2.3863 12 6 -0.2161 0.3332 4.2794 13 6 -0.8852 1.6321 4.6485 14 6 -0.2049 2.5677 5.4066 15 6 -0.8133 3.7613 5.7416 16 6 -2.1136 4.0169 5.3261 17 8 -2.7161 5.1871 5.6582 18 6 -4.0140 5.3249 5.3199 19 1 -4.5043 4.5593 4.7371 20 6 -4.7191 6.4497 5.7202 21 7 -4.1219 7.3822 6.4305 22 14 -6.5174 6.6403 5.2520 23 1 -6.9498 5.4621 4.4581 24 1 -7.3419 6.7377 6.4833 25 1 -6.6900 7.8728 4.4419 26 6 -2.7960 3.0729 4.5698 27 6 -2.1800 1.8838 4.2329 28 1 -0.3634 0.5901 0.8413 29 1 -0.3633 0.4335 -0.9318 30 1 -0.3633 -1.0237 0.0902 31 1 3.1256 1.4441 -0.0979 32 1 1.5988 1.9838 -0.8369 33 1 1.7588 1.9272 0.9349 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 0.7581 -2.4511 0.7263 38 1 2.4738 -2.8908 1.1330 39 1 0.4370 -2.4394 3.1569 40 1 2.2059 -2.1475 3.4556 41 1 -0.9690 -0.4496 4.1870 42 1 0.4994 0.0595 5.0548 43 1 0.8049 2.3666 5.7327 44 1 -0.2800 4.4934 6.3299 45 1 -4.6153 8.1689 6.7109 46 1 -3.8071 3.2690 4.2449 47 1 -2.7100 1.1495 3.6444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647650835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:58 Heat of formation + Delta-G solvation = -8.426874 kcal Electronic energy + Delta-G solvation = -26689.630292 eV Core-core repulsion = 23032.345156 eV Total energy + Delta-G solvation = -3657.285137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95285 -39.05872 -37.90286 -36.30925 -35.67166 -32.41853 -31.43782 -30.09953 -29.67226 -27.34877 -27.25654 -26.48464 -25.87831 -24.95752 -22.23667 -21.90772 -20.74862 -19.80983 -18.20235 -17.92319 -17.01990 -16.91680 -16.24493 -15.80964 -15.04838 -14.56180 -14.40435 -14.27434 -14.02674 -13.86556 -13.59033 -13.47393 -13.36788 -13.05746 -12.80483 -12.63699 -12.41233 -12.33405 -12.21710 -11.90818 -11.78194 -11.70148 -11.55377 -11.25901 -11.21637 -10.89053 -10.76107 -10.69671 -10.62013 -10.54557 -10.40259 -10.38103 -9.34888 -9.26976 -8.78094 -8.69895 -8.08986 -7.10157 -6.40256 -3.98648 2.28718 2.31281 2.77475 2.87890 3.15794 3.16722 3.22477 4.00871 4.11897 4.43058 4.53849 4.70384 4.71872 4.84007 4.88610 5.03663 5.15506 5.17884 5.23316 5.27135 5.31872 5.36204 5.38215 5.43587 5.50822 5.64122 5.72207 5.78136 5.80281 5.81085 5.83940 5.88544 5.92180 6.09129 6.11119 6.20511 6.27788 6.45282 6.47949 6.60213 6.76563 6.97694 7.11591 7.30261 7.43382 7.50361 7.71538 7.90361 8.05393 8.41026 9.05692 9.76997 10.78100 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.002722 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.134121 B =10283.043306 C =10734.161990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.156 4.156 4 C -0.138 4.138 5 C 0.145 3.855 6 H 0.087 0.913 7 C -0.152 4.152 8 C 0.100 3.900 9 N -0.646 5.646 10 C 0.532 3.468 11 O -0.508 6.508 12 C -0.074 4.074 13 C -0.168 4.168 14 C -0.059 4.059 15 C -0.191 4.191 16 C 0.157 3.843 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.752 -21.628 -9.918 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.213 4.213 4 C -0.195 4.195 5 C 0.042 3.958 6 H 0.105 0.895 7 C -0.190 4.190 8 C -0.023 4.023 9 N -0.384 5.384 10 C 0.322 3.678 11 O -0.383 6.383 12 C -0.114 4.114 13 C -0.169 4.169 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.251 4.251 27 C -0.074 4.074 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.618 -20.412 -9.905 25.490 hybrid contribution -0.823 0.029 -0.265 0.865 sum 10.795 -20.383 -10.170 25.207 Atomic orbital electron populations 1.22047 0.93950 1.01342 1.03056 1.20563 0.96567 0.96065 0.93300 1.22118 0.99330 0.95195 1.04608 1.21828 1.00709 1.00025 0.96966 1.22855 0.94402 0.92949 0.85629 0.89476 1.23659 1.02727 0.96291 0.96279 1.23085 1.01605 0.80761 0.96856 1.50281 1.49775 1.10246 1.28105 1.20694 0.78516 0.82134 0.86428 1.90635 1.60573 1.25957 1.61101 1.20352 0.99343 0.97828 0.93879 1.18636 0.95460 0.96265 1.06584 1.20384 0.97661 0.92828 0.96906 1.20148 0.94525 0.98710 1.07677 1.19378 0.92187 0.86146 0.91951 1.83977 1.25684 1.28899 1.69705 1.21373 0.83652 1.07030 1.34556 0.89056 1.25283 1.00119 0.94925 0.96252 1.70052 1.36805 1.08768 1.34296 0.85654 0.80624 0.78750 0.78435 1.19111 1.20171 1.20175 1.21096 1.01945 0.95725 1.06348 1.20486 0.93846 0.96034 0.97060 0.90306 0.93338 0.93514 0.93850 0.93181 0.89102 0.92657 0.92455 0.92793 0.88762 0.90049 0.90071 0.89945 0.89422 0.89304 0.87507 0.86601 0.92135 0.85633 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 7.72 37.16 0.29 -1.45 16 2 C -0.06 -0.66 0.58 -154.51 -0.09 -0.75 16 3 C -0.16 -1.92 8.32 37.16 0.31 -1.62 16 4 C -0.14 -1.08 8.24 37.15 0.31 -0.77 16 5 C 0.14 1.31 3.56 -66.86 -0.24 1.07 16 6 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.15 -0.91 6.63 -25.80 -0.17 -1.08 16 8 C 0.10 0.65 8.61 -2.97 -0.03 0.62 16 9 N -0.65 -6.81 2.92 -171.18 -0.50 -7.31 16 10 C 0.53 7.53 6.85 -10.99 -0.08 7.46 16 11 O -0.51 -9.23 11.47 5.56 0.06 -9.17 16 12 C -0.07 -0.98 5.58 -29.04 -0.16 -1.15 16 13 C -0.17 -3.01 4.38 -104.57 -0.46 -3.46 16 14 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 15 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 16 C 0.16 3.98 6.65 -39.10 -0.26 3.72 16 17 O -0.18 -5.30 9.76 0.05 0.00 -5.30 16 18 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.92 13.67 55.48 0.76 -25.17 16 22 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 26 C -0.23 -5.31 9.17 -39.40 -0.36 -5.67 16 27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 28 H 0.08 1.19 4.54 -51.93 -0.24 0.95 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.48 6.49 -51.93 -0.34 0.14 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.43 5.08 -51.93 -0.26 1.17 16 34 H 0.05 0.37 7.25 -51.93 -0.38 -0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.59 6.39 -51.93 -0.33 0.26 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.98 8.08 -51.93 -0.42 0.57 16 42 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 43 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 44 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 46 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 47 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -33.70 371.85 -8.16 -41.86 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.16 Total: 4.15 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.90 Total: -20.69 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.26 Total: -32.48 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.06 Total: -14.46 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.70 -8.16 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647650835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.434 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds