Wall clock time and date at job start Tue Mar 31 2020 11:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46645 * 2 1 4 4 C 1.52991 * 109.47319 * 239.99929 * 2 1 3 5 5 C 1.53000 * 109.46864 * 119.99622 * 2 1 3 6 6 H 1.08994 * 112.96613 * 194.68681 * 5 2 1 7 7 C 1.53951 * 113.77044 * 63.00838 * 5 2 1 8 8 C 1.53946 * 86.29034 * 221.97982 * 7 5 2 9 9 N 1.47582 * 86.11833 * 23.60755 * 8 7 5 10 10 C 1.34775 * 134.49294 * 155.36538 * 9 8 7 11 11 O 1.21279 * 119.99835 * 184.49080 * 10 9 8 12 12 C 1.50696 * 120.00055 * 4.48017 * 10 9 8 13 13 C 1.50702 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.38304 * 119.93053 * 269.73058 * 13 12 10 15 15 C 1.38101 * 120.06742 * 179.72278 * 14 13 12 16 16 C 1.38885 * 119.92752 * 0.54850 * 15 14 13 17 17 O 1.35749 * 120.06389 * 179.74776 * 16 15 14 18 18 C 1.34831 * 116.99576 * 185.39951 * 17 16 15 19 19 H 1.07991 * 120.00185 * 354.95521 * 18 17 16 20 20 C 1.38654 * 119.99805 * 174.95845 * 18 17 16 21 21 N 1.31558 * 120.00264 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99898 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47069 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47254 * 119.99944 * 22 20 18 25 25 H 1.48502 * 109.46765 * 239.99916 * 22 20 18 26 26 C 1.38879 * 119.86307 * 359.72827 * 16 15 14 27 27 C 1.38095 * 119.92988 * 359.97438 * 26 16 15 28 28 H 1.08994 * 109.47515 * 305.04453 * 1 2 3 29 29 H 1.09003 * 109.47070 * 65.04781 * 1 2 3 30 30 H 1.09002 * 109.47024 * 185.03664 * 1 2 3 31 31 H 1.09006 * 109.46977 * 185.46795 * 3 2 1 32 32 H 1.08997 * 109.47214 * 305.46974 * 3 2 1 33 33 H 1.08997 * 109.47161 * 65.47198 * 3 2 1 34 34 H 1.09005 * 109.47417 * 299.99765 * 4 2 1 35 35 H 1.08998 * 109.47683 * 59.99799 * 4 2 1 36 36 H 1.08997 * 109.47034 * 180.02562 * 4 2 1 37 37 H 1.08999 * 113.73934 * 336.32484 * 7 5 2 38 38 H 1.08993 * 113.74007 * 107.52281 * 7 5 2 39 39 H 1.08999 * 113.76712 * 137.90429 * 8 7 5 40 40 H 1.08999 * 113.76832 * 269.19103 * 8 7 5 41 41 H 1.09001 * 109.47320 * 300.00594 * 12 10 9 42 42 H 1.09002 * 109.46890 * 60.00770 * 12 10 9 43 43 H 1.08005 * 119.96358 * 0.02562 * 14 13 12 44 44 H 1.07999 * 120.03561 * 180.27022 * 15 14 13 45 45 H 0.97003 * 120.00358 * 180.02562 * 21 20 18 46 46 H 1.07997 * 120.03141 * 180.02562 * 26 16 15 47 47 H 1.08000 * 119.96335 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0400 -0.7212 1.2493 6 1 3.0970 -0.5395 1.4436 7 6 1.6439 -2.2075 1.3129 8 6 1.3516 -1.9626 2.8044 9 7 1.1784 -0.5444 2.4345 10 6 0.5043 0.4947 2.9657 11 8 0.4774 1.5598 2.3863 12 6 -0.2161 0.3332 4.2794 13 6 -0.8852 1.6321 4.6485 14 6 -0.2049 2.5677 5.4066 15 6 -0.8133 3.7613 5.7416 16 6 -2.1136 4.0169 5.3261 17 8 -2.7161 5.1871 5.6582 18 6 -4.0140 5.3249 5.3199 19 1 -4.5043 4.5593 4.7371 20 6 -4.7191 6.4497 5.7202 21 7 -4.1219 7.3822 6.4305 22 14 -6.5174 6.6403 5.2520 23 1 -6.9498 5.4621 4.4581 24 1 -7.3419 6.7377 6.4833 25 1 -6.6900 7.8728 4.4419 26 6 -2.7960 3.0729 4.5698 27 6 -2.1800 1.8838 4.2329 28 1 -0.3634 0.5901 0.8413 29 1 -0.3633 0.4335 -0.9318 30 1 -0.3633 -1.0237 0.0902 31 1 3.1256 1.4441 -0.0979 32 1 1.5988 1.9838 -0.8369 33 1 1.7588 1.9272 0.9349 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 0.7581 -2.4511 0.7263 38 1 2.4738 -2.8908 1.1330 39 1 0.4370 -2.4394 3.1569 40 1 2.2059 -2.1475 3.4556 41 1 -0.9690 -0.4496 4.1870 42 1 0.4994 0.0595 5.0548 43 1 0.8049 2.3666 5.7327 44 1 -0.2800 4.4934 6.3299 45 1 -4.6153 8.1689 6.7109 46 1 -3.8071 3.2690 4.2449 47 1 -2.7100 1.1495 3.6444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647650835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:57 Heat of formation + Delta-G solvation = -28.706933 kcal Electronic energy + Delta-G solvation = -26690.509702 eV Core-core repulsion = 23032.345156 eV Total energy + Delta-G solvation = -3658.164546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76065 -40.76951 -39.15514 -37.94546 -36.44937 -34.39898 -32.89535 -31.79790 -30.62909 -28.35330 -28.17429 -27.73026 -27.00393 -26.41311 -23.65082 -23.11753 -22.08282 -20.77056 -19.85583 -19.03725 -18.81575 -17.90876 -17.04519 -16.88438 -16.44811 -16.28738 -15.84996 -15.66362 -15.50784 -15.08026 -14.87756 -14.64396 -14.46433 -14.24329 -14.15966 -13.84694 -13.61547 -13.39094 -13.19231 -13.01405 -12.93947 -12.81373 -12.49944 -12.47333 -12.35677 -12.30500 -12.25970 -12.12354 -12.09544 -11.56498 -11.50279 -11.19383 -11.13014 -10.82353 -10.38830 -9.78045 -9.50221 -8.90220 -8.48618 -6.16856 0.59800 0.66218 1.32805 1.41489 1.51798 1.81123 2.02067 2.16536 2.81714 3.14822 3.50346 3.55097 3.80263 3.81534 3.94909 3.98828 4.03402 4.06837 4.17771 4.32127 4.40851 4.48062 4.56871 4.58088 4.66526 4.70714 4.75851 4.78092 4.80064 4.81922 4.91684 4.99419 5.04865 5.08526 5.12551 5.13344 5.17235 5.24930 5.29353 5.39737 5.41522 5.54516 5.58475 5.62270 5.70215 5.77239 6.01786 6.21757 6.89869 6.95951 7.42843 7.77363 8.75221 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.002722 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.134121 B =10283.043306 C =10734.161990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.154 4.154 4 C -0.131 4.131 5 C 0.133 3.867 6 H 0.095 0.905 7 C -0.135 4.135 8 C 0.099 3.901 9 N -0.647 5.647 10 C 0.526 3.474 11 O -0.562 6.562 12 C -0.072 4.072 13 C -0.141 4.141 14 C -0.058 4.058 15 C -0.206 4.206 16 C 0.113 3.887 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.268 1.268 26 C -0.243 4.243 27 C -0.059 4.059 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.143 0.857 44 H 0.111 0.889 45 H 0.273 0.727 46 H 0.116 0.884 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.821 -26.625 -11.073 31.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.211 4.211 4 C -0.189 4.189 5 C 0.031 3.969 6 H 0.112 0.888 7 C -0.173 4.173 8 C -0.022 4.022 9 N -0.383 5.383 10 C 0.317 3.683 11 O -0.441 6.441 12 C -0.112 4.112 13 C -0.142 4.142 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.063 3.937 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.176 1.176 24 H -0.190 1.190 25 H -0.193 1.193 26 C -0.262 4.262 27 C -0.077 4.077 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.161 0.839 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.740 -25.518 -11.073 30.595 hybrid contribution -0.865 1.284 0.001 1.548 sum 11.875 -24.234 -11.072 29.170 Atomic orbital electron populations 1.21987 0.95308 1.01622 1.01128 1.20564 0.95392 0.94959 0.95537 1.22074 1.00080 0.96802 1.02176 1.21773 1.01436 1.00543 0.95155 1.23096 0.94449 0.95075 0.84286 0.88771 1.23602 1.03698 0.94117 0.95861 1.23445 1.03369 0.77672 0.97694 1.50392 1.48517 1.11061 1.28350 1.20689 0.78961 0.82262 0.86394 1.90654 1.62725 1.28270 1.62489 1.20433 1.00612 0.95486 0.94631 1.19229 0.94516 0.97623 1.02863 1.20828 0.99079 0.91430 0.96226 1.20424 0.93801 1.00273 1.07989 1.19909 0.93576 0.86301 0.93915 1.83937 1.26360 1.31442 1.72343 1.21858 0.84111 1.07841 1.35177 0.88314 1.26623 1.05467 0.94106 0.95934 1.70196 1.39237 1.09873 1.36745 0.84514 0.73711 0.79233 0.78610 1.17556 1.18971 1.19345 1.21204 1.01799 0.96795 1.06390 1.20873 0.94813 0.95243 0.96797 0.93488 0.94297 0.91691 0.92608 0.94413 0.92488 0.90735 0.93202 0.91578 0.88732 0.87038 0.88426 0.87700 0.86411 0.86126 0.83889 0.87039 0.91806 0.86573 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 7.72 71.98 0.56 -2.66 16 2 C -0.06 -1.18 0.58 -52.18 -0.03 -1.21 16 3 C -0.15 -3.82 8.32 71.98 0.60 -3.22 16 4 C -0.13 -1.67 8.24 71.98 0.59 -1.07 16 5 C 0.13 1.94 3.56 45.09 0.16 2.10 16 6 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 7 C -0.14 -0.90 6.63 31.26 0.21 -0.69 16 8 C 0.10 0.73 8.61 86.48 0.74 1.47 16 9 N -0.65 -11.23 2.92 -813.88 -2.37 -13.61 16 10 C 0.53 13.53 6.85 87.66 0.60 14.13 16 11 O -0.56 -20.25 11.47 -3.03 -0.03 -20.28 16 12 C -0.07 -1.61 5.58 29.10 0.16 -1.45 16 13 C -0.14 -4.75 4.38 -19.83 -0.09 -4.83 16 14 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 15 C -0.21 -9.56 9.99 22.39 0.22 -9.34 16 16 C 0.11 6.08 6.65 22.58 0.15 6.23 16 17 O -0.23 -14.93 9.76 -22.73 -0.22 -15.15 16 18 C -0.41 -25.35 9.49 67.92 0.64 -24.71 16 19 H 0.10 5.61 5.20 -2.91 -0.02 5.59 16 20 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 21 N -0.92 -58.64 13.67 21.61 0.30 -58.35 16 22 Si 1.02 44.62 29.55 68.60 2.03 46.64 16 23 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 C -0.24 -11.51 9.17 22.39 0.21 -11.31 16 27 C -0.06 -2.24 9.69 22.25 0.22 -2.03 16 28 H 0.05 1.40 4.54 -2.39 -0.01 1.38 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.16 6.49 -2.39 -0.02 1.15 16 31 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.85 5.08 -2.39 -0.01 1.84 16 34 H 0.07 0.67 7.25 -2.38 -0.02 0.66 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 0.68 6.39 -2.39 -0.02 0.67 16 38 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.12 1.99 8.08 -2.39 -0.02 1.97 16 42 H 0.12 2.00 8.08 -2.39 -0.02 1.99 16 43 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 45 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 46 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 47 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -82.98 371.85 6.28 -76.70 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.96 Total: 25.52 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 5.63 Total: -41.47 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -2.08 Total: -71.95 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.26 Total: -35.43 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -82.98 6.28 -76.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647650835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.993 kcal (2) G-P(sol) polarization free energy of solvation -82.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds