Wall clock time and date at job start Tue Mar 31 2020 11:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47295 * 2 1 4 4 C 1.53005 * 109.47246 * 239.99796 * 2 1 3 5 5 C 1.53003 * 109.47010 * 119.99862 * 2 1 3 6 6 H 1.09008 * 112.77754 * 175.58944 * 5 2 1 7 7 C 1.53493 * 113.46888 * 306.37412 * 5 2 1 8 8 C 1.53241 * 83.42986 * 140.68127 * 7 5 2 9 9 N 1.47066 * 113.46632 * 44.81231 * 5 2 1 10 10 C 1.34773 * 136.05882 * 38.06784 * 9 5 2 11 11 O 1.21283 * 120.00260 * 4.92164 * 10 9 5 12 12 C 1.50706 * 119.99937 * 184.93021 * 10 9 5 13 13 C 1.50696 * 109.47204 * 179.97438 * 12 10 9 14 14 C 1.38308 * 119.93024 * 89.99448 * 13 12 10 15 15 C 1.38100 * 120.06708 * 179.97438 * 14 13 12 16 16 C 1.38876 * 119.93384 * 0.02562 * 15 14 13 17 17 O 1.35753 * 120.06975 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00096 * 5.73710 * 17 16 15 19 19 H 1.08002 * 119.99722 * 354.93477 * 18 17 16 20 20 C 1.38655 * 119.99990 * 174.65821 * 18 17 16 21 21 N 1.31551 * 119.99647 * 180.27401 * 20 18 17 22 22 Si 1.86798 * 119.99735 * 0.27771 * 20 18 17 23 23 H 1.48502 * 109.47112 * 89.99889 * 22 20 18 24 24 H 1.48503 * 109.46631 * 209.99821 * 22 20 18 25 25 H 1.48495 * 109.47196 * 329.99513 * 22 20 18 26 26 C 1.38885 * 119.85989 * 0.26746 * 16 15 14 27 27 C 1.38101 * 119.92995 * 359.47508 * 26 16 15 28 28 H 1.09002 * 109.47408 * 305.22154 * 1 2 3 29 29 H 1.08999 * 109.47176 * 65.22316 * 1 2 3 30 30 H 1.09003 * 109.47151 * 185.22656 * 1 2 3 31 31 H 1.09003 * 109.47285 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46922 * 300.00034 * 3 2 1 33 33 H 1.09003 * 109.47142 * 59.99943 * 3 2 1 34 34 H 1.08997 * 109.46594 * 311.64490 * 4 2 1 35 35 H 1.09002 * 109.46529 * 71.64347 * 4 2 1 36 36 H 1.08999 * 109.47079 * 191.64502 * 4 2 1 37 37 H 1.09007 * 114.20478 * 254.43464 * 7 5 2 38 38 H 1.09001 * 114.20849 * 27.06487 * 7 5 2 39 39 H 1.08999 * 113.37838 * 219.29557 * 8 7 5 40 40 H 1.08997 * 113.47160 * 88.92815 * 8 7 5 41 41 H 1.08994 * 109.47194 * 59.99098 * 12 10 9 42 42 H 1.09006 * 109.46840 * 299.99436 * 12 10 9 43 43 H 1.07999 * 119.96531 * 359.97438 * 14 13 12 44 44 H 1.07999 * 120.03207 * 179.97438 * 15 14 13 45 45 H 0.97006 * 119.99325 * 180.02562 * 21 20 18 46 46 H 1.08000 * 120.03038 * 179.72649 * 26 16 15 47 47 H 1.07996 * 119.96518 * 180.22513 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1254 -0.8201 1.2660 7 6 1.4564 -0.1668 2.5562 8 6 1.4132 -1.6449 2.9581 9 7 1.3328 -1.9802 1.5284 10 6 0.8282 -2.9927 0.7959 11 8 0.9985 -3.0164 -0.4047 12 6 0.0521 -4.0955 1.4687 13 6 -0.3990 -5.0951 0.4351 14 6 0.4090 -6.1717 0.1175 15 6 -0.0018 -7.0898 -0.8288 16 6 -1.2274 -6.9308 -1.4623 17 8 -1.6342 -7.8318 -2.3926 18 6 -0.8590 -8.9205 -2.5704 19 1 0.0810 -9.0056 -2.0453 20 6 -1.2712 -9.9334 -3.4228 21 7 -0.5173 -10.9981 -3.5920 22 14 -2.8970 -9.7860 -4.3309 23 1 -2.6752 -9.1156 -5.6372 24 1 -3.4609 -11.1407 -4.5591 25 1 -3.8470 -8.9848 -3.5181 26 6 -2.0338 -5.8453 -1.1456 27 6 -1.6198 -4.9336 -0.1945 28 1 -0.3634 0.5927 0.8395 29 1 -0.3633 0.4307 -0.9330 30 1 -0.3633 -1.0234 0.0936 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.5172 -1.6714 -1.3590 35 1 1.8559 -0.1018 -2.1270 36 1 3.1101 -0.9045 -1.1516 37 1 2.1546 0.4362 3.1370 38 1 0.4753 0.2955 2.4471 39 1 0.5179 -1.9149 3.5181 40 1 2.3299 -1.9923 3.4346 41 1 -0.8189 -3.6734 1.9698 42 1 0.6878 -4.5922 2.2018 43 1 1.3622 -6.2946 0.6102 44 1 0.6298 -7.9300 -1.0767 45 1 -0.8056 -11.7065 -4.1887 46 1 -2.9855 -5.7165 -1.6397 47 1 -2.2480 -4.0913 0.0549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647650836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:01 Heat of formation + Delta-G solvation = 1.237624 kcal Electronic energy + Delta-G solvation = -26702.496112 eV Core-core repulsion = 23045.630059 eV Total energy + Delta-G solvation = -3656.866053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11637 -39.22904 -38.06581 -36.48346 -35.73299 -32.47794 -31.65328 -30.20312 -29.82335 -27.41552 -27.39071 -26.57191 -25.84524 -24.79063 -22.37557 -22.04037 -20.71677 -19.84358 -18.30710 -17.84818 -17.23552 -17.13779 -16.25786 -15.87693 -15.07211 -14.65464 -14.54892 -14.20618 -14.08796 -13.79191 -13.69877 -13.58837 -13.37491 -13.17480 -12.77378 -12.64682 -12.46884 -12.43245 -12.24691 -12.16295 -11.98446 -11.77718 -11.60134 -11.48368 -11.27732 -10.95087 -10.78130 -10.76341 -10.63420 -10.60603 -10.30780 -10.11565 -9.34365 -9.24568 -8.82225 -8.76407 -8.18862 -7.26080 -6.38066 -4.04332 2.17238 2.20566 2.71666 2.84745 3.25556 3.28446 3.43139 4.04118 4.27116 4.36688 4.50664 4.65626 4.69241 4.78121 4.84259 4.90212 5.00974 5.12410 5.14889 5.20272 5.22169 5.28060 5.33394 5.40416 5.46302 5.62098 5.63409 5.67949 5.71042 5.76512 5.80017 5.83301 5.94037 6.01210 6.05105 6.15966 6.18020 6.30099 6.37874 6.61198 6.75943 6.84207 7.07598 7.26968 7.35384 7.64201 7.71718 7.84722 8.08089 8.42293 8.97452 9.60596 10.69729 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.002691 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.643287 B =10401.568348 C =10732.079301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.137 4.137 4 C -0.175 4.175 5 C 0.143 3.857 6 H 0.086 0.914 7 C -0.156 4.156 8 C 0.099 3.901 9 N -0.648 5.648 10 C 0.540 3.460 11 O -0.507 6.507 12 C -0.074 4.074 13 C -0.161 4.161 14 C -0.057 4.057 15 C -0.219 4.219 16 C 0.163 3.837 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.191 4.191 27 C -0.061 4.061 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.132 0.868 45 H 0.279 0.721 46 H 0.116 0.884 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 23.201 15.026 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.069 4.069 3 C -0.195 4.195 4 C -0.231 4.231 5 C 0.040 3.960 6 H 0.104 0.896 7 C -0.194 4.194 8 C -0.024 4.024 9 N -0.386 5.386 10 C 0.331 3.669 11 O -0.382 6.382 12 C -0.114 4.114 13 C -0.162 4.162 14 C -0.076 4.076 15 C -0.238 4.238 16 C 0.111 3.889 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.210 4.210 27 C -0.079 4.079 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.150 0.850 45 H 0.089 0.911 46 H 0.134 0.866 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.491 22.729 13.956 26.899 hybrid contribution -0.256 -0.114 -0.369 0.463 sum 3.235 22.615 13.587 26.581 Atomic orbital electron populations 1.21855 0.94291 1.02218 1.00931 1.20626 0.96166 0.94939 0.95180 1.21812 1.00837 0.95103 1.01715 1.22552 1.01236 1.04228 0.95129 1.22714 0.96591 0.82217 0.94519 0.89589 1.23530 1.02931 0.96062 0.96885 1.22830 1.02217 0.93533 0.83821 1.49894 1.58420 1.21745 1.08562 1.20585 0.78733 0.80505 0.87093 1.90480 1.58658 1.74577 1.14440 1.20357 0.99781 0.93612 0.97660 1.18701 0.96874 0.97761 1.02857 1.20554 0.97420 0.93402 0.96200 1.21215 0.98235 1.02781 1.01571 1.19123 0.92252 0.89689 0.87879 1.83569 1.49334 1.30011 1.49419 1.20777 1.03144 0.94086 1.28362 0.87650 1.24465 0.99082 0.93741 0.96740 1.69650 1.37889 1.07576 1.36803 0.86177 0.82956 0.77493 0.80266 1.19888 1.20853 1.18336 1.20144 1.00971 0.96684 1.03211 1.20380 0.95235 0.97081 0.95220 0.93133 0.92927 0.92152 0.92773 0.92474 0.92711 0.86730 0.93864 0.93934 0.89608 0.88398 0.90366 0.89954 0.89135 0.89168 0.87627 0.85000 0.91101 0.86586 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 7.80 37.16 0.29 -1.12 16 2 C -0.07 -0.68 0.60 -154.51 -0.09 -0.77 16 3 C -0.14 -1.05 8.31 37.16 0.31 -0.74 16 4 C -0.18 -2.24 8.17 37.16 0.30 -1.94 16 5 C 0.14 1.25 3.24 -72.40 -0.23 1.02 16 6 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 7 C -0.16 -0.88 7.11 -26.35 -0.19 -1.06 16 8 C 0.10 0.62 8.40 -8.64 -0.07 0.55 16 9 N -0.65 -6.64 2.98 -177.61 -0.53 -7.17 16 10 C 0.54 7.41 6.47 -10.98 -0.07 7.34 16 11 O -0.51 -8.98 12.20 5.56 0.07 -8.91 16 12 C -0.07 -0.94 5.66 -29.03 -0.16 -1.10 16 13 C -0.16 -2.75 4.38 -104.58 -0.46 -3.20 16 14 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 15 C -0.22 -4.93 9.17 -39.40 -0.36 -5.29 16 16 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 17 O -0.22 -5.94 8.59 0.04 0.00 -5.94 16 18 C -0.39 -11.22 9.95 30.89 0.31 -10.91 16 19 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 20 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 21 N -0.88 -25.93 13.96 55.48 0.77 -25.15 16 22 Si 0.91 22.15 28.62 -169.99 -4.86 17.28 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.19 -3.96 9.99 -39.39 -0.39 -4.35 16 27 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 28 H 0.05 0.42 6.47 -51.93 -0.34 0.09 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.76 5.60 -51.93 -0.29 0.47 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.34 7.64 -51.93 -0.40 -0.06 16 34 H 0.11 1.87 4.08 -53.23 -0.22 1.65 16 35 H 0.04 0.53 8.10 -51.93 -0.42 0.10 16 36 H 0.04 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 38 H 0.10 0.56 6.17 -51.93 -0.32 0.24 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 42 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 44 H 0.13 3.11 5.64 -52.49 -0.30 2.82 16 45 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 47 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -32.55 371.33 -8.09 -40.64 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.19 Total: 2.85 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.95 Total: -19.18 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.25 Total: -32.33 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.07 Total: -14.86 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.55 -8.09 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647650836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.874 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds