Wall clock time and date at job start Tue Mar 31 2020 11:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47295 * 2 1 4 4 C 1.53005 * 109.47246 * 239.99796 * 2 1 3 5 5 C 1.53003 * 109.47010 * 119.99862 * 2 1 3 6 6 H 1.09008 * 112.77754 * 175.58944 * 5 2 1 7 7 C 1.53493 * 113.46888 * 306.37412 * 5 2 1 8 8 C 1.53241 * 83.42986 * 140.68127 * 7 5 2 9 9 N 1.47066 * 113.46632 * 44.81231 * 5 2 1 10 10 C 1.34773 * 136.05882 * 38.06784 * 9 5 2 11 11 O 1.21283 * 120.00260 * 4.92164 * 10 9 5 12 12 C 1.50706 * 119.99937 * 184.93021 * 10 9 5 13 13 C 1.50696 * 109.47204 * 179.97438 * 12 10 9 14 14 C 1.38308 * 119.93024 * 89.99448 * 13 12 10 15 15 C 1.38100 * 120.06708 * 179.97438 * 14 13 12 16 16 C 1.38876 * 119.93384 * 0.02562 * 15 14 13 17 17 O 1.35753 * 120.06975 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00096 * 5.73710 * 17 16 15 19 19 H 1.08002 * 119.99722 * 354.93477 * 18 17 16 20 20 C 1.38655 * 119.99990 * 174.65821 * 18 17 16 21 21 N 1.31551 * 119.99647 * 180.27401 * 20 18 17 22 22 Si 1.86798 * 119.99735 * 0.27771 * 20 18 17 23 23 H 1.48502 * 109.47112 * 89.99889 * 22 20 18 24 24 H 1.48503 * 109.46631 * 209.99821 * 22 20 18 25 25 H 1.48495 * 109.47196 * 329.99513 * 22 20 18 26 26 C 1.38885 * 119.85989 * 0.26746 * 16 15 14 27 27 C 1.38101 * 119.92995 * 359.47508 * 26 16 15 28 28 H 1.09002 * 109.47408 * 305.22154 * 1 2 3 29 29 H 1.08999 * 109.47176 * 65.22316 * 1 2 3 30 30 H 1.09003 * 109.47151 * 185.22656 * 1 2 3 31 31 H 1.09003 * 109.47285 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46922 * 300.00034 * 3 2 1 33 33 H 1.09003 * 109.47142 * 59.99943 * 3 2 1 34 34 H 1.08997 * 109.46594 * 311.64490 * 4 2 1 35 35 H 1.09002 * 109.46529 * 71.64347 * 4 2 1 36 36 H 1.08999 * 109.47079 * 191.64502 * 4 2 1 37 37 H 1.09007 * 114.20478 * 254.43464 * 7 5 2 38 38 H 1.09001 * 114.20849 * 27.06487 * 7 5 2 39 39 H 1.08999 * 113.37838 * 219.29557 * 8 7 5 40 40 H 1.08997 * 113.47160 * 88.92815 * 8 7 5 41 41 H 1.08994 * 109.47194 * 59.99098 * 12 10 9 42 42 H 1.09006 * 109.46840 * 299.99436 * 12 10 9 43 43 H 1.07999 * 119.96531 * 359.97438 * 14 13 12 44 44 H 1.07999 * 120.03207 * 179.97438 * 15 14 13 45 45 H 0.97006 * 119.99325 * 180.02562 * 21 20 18 46 46 H 1.08000 * 120.03038 * 179.72649 * 26 16 15 47 47 H 1.07996 * 119.96518 * 180.22513 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1254 -0.8201 1.2660 7 6 1.4564 -0.1668 2.5562 8 6 1.4132 -1.6449 2.9581 9 7 1.3328 -1.9802 1.5284 10 6 0.8282 -2.9927 0.7959 11 8 0.9985 -3.0164 -0.4047 12 6 0.0521 -4.0955 1.4687 13 6 -0.3990 -5.0951 0.4351 14 6 0.4090 -6.1717 0.1175 15 6 -0.0018 -7.0898 -0.8288 16 6 -1.2274 -6.9308 -1.4623 17 8 -1.6342 -7.8318 -2.3926 18 6 -0.8590 -8.9205 -2.5704 19 1 0.0810 -9.0056 -2.0453 20 6 -1.2712 -9.9334 -3.4228 21 7 -0.5173 -10.9981 -3.5920 22 14 -2.8970 -9.7860 -4.3309 23 1 -2.6752 -9.1156 -5.6372 24 1 -3.4609 -11.1407 -4.5591 25 1 -3.8470 -8.9848 -3.5181 26 6 -2.0338 -5.8453 -1.1456 27 6 -1.6198 -4.9336 -0.1945 28 1 -0.3634 0.5927 0.8395 29 1 -0.3633 0.4307 -0.9330 30 1 -0.3633 -1.0234 0.0936 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.5172 -1.6714 -1.3590 35 1 1.8559 -0.1018 -2.1270 36 1 3.1101 -0.9045 -1.1516 37 1 2.1546 0.4362 3.1370 38 1 0.4753 0.2955 2.4471 39 1 0.5179 -1.9149 3.5181 40 1 2.3299 -1.9923 3.4346 41 1 -0.8189 -3.6734 1.9698 42 1 0.6878 -4.5922 2.2018 43 1 1.3622 -6.2946 0.6102 44 1 0.6298 -7.9300 -1.0767 45 1 -0.8056 -11.7065 -4.1887 46 1 -2.9855 -5.7165 -1.6397 47 1 -2.2480 -4.0913 0.0549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647650836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:01 Heat of formation + Delta-G solvation = -17.905461 kcal Electronic energy + Delta-G solvation = -26703.326218 eV Core-core repulsion = 23045.630059 eV Total energy + Delta-G solvation = -3657.696159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87853 -40.89544 -39.28828 -38.05113 -36.48276 -34.52988 -33.04830 -31.83045 -30.75129 -28.50908 -28.18766 -27.78246 -26.82739 -26.27636 -23.73139 -23.19264 -22.03980 -20.76942 -19.82861 -19.15928 -19.05396 -17.99176 -17.05491 -16.93243 -16.61872 -16.13535 -15.87154 -15.67308 -15.40612 -15.19171 -14.92873 -14.80728 -14.39223 -14.23055 -14.10603 -14.05696 -13.90367 -13.44452 -13.24514 -13.06951 -12.96977 -12.82532 -12.69674 -12.50099 -12.46377 -12.43373 -12.32693 -12.05675 -11.94221 -11.54938 -11.49133 -11.29758 -10.98931 -10.91915 -10.28590 -9.80724 -9.54022 -8.99070 -8.51833 -6.24451 0.56750 0.60016 1.29113 1.34169 1.50058 1.77252 2.01250 2.26747 2.75463 3.03816 3.15140 3.49967 3.76559 3.82337 3.94129 3.98743 4.01437 4.03949 4.14464 4.30111 4.41725 4.46747 4.55239 4.57194 4.64568 4.70302 4.76037 4.78872 4.79409 4.80289 4.90952 4.95714 5.01683 5.06395 5.12918 5.14136 5.22571 5.23619 5.36152 5.36441 5.42744 5.54598 5.56913 5.71684 5.72713 5.78152 5.89708 6.23293 6.82365 6.90844 7.45698 7.57040 8.60081 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.002691 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.643287 B =10401.568348 C =10732.079301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 C -0.131 4.131 4 C -0.175 4.175 5 C 0.130 3.870 6 H 0.087 0.913 7 C -0.136 4.136 8 C 0.097 3.903 9 N -0.650 5.650 10 C 0.534 3.466 11 O -0.561 6.561 12 C -0.072 4.072 13 C -0.134 4.134 14 C -0.064 4.064 15 C -0.237 4.237 16 C 0.119 3.881 17 O -0.246 6.246 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.192 4.192 27 C -0.058 4.058 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.285 0.715 46 H 0.128 0.872 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 27.003 18.426 32.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.069 4.069 3 C -0.189 4.189 4 C -0.231 4.231 5 C 0.027 3.973 6 H 0.105 0.895 7 C -0.174 4.174 8 C -0.024 4.024 9 N -0.386 5.386 10 C 0.326 3.674 11 O -0.440 6.440 12 C -0.111 4.111 13 C -0.135 4.135 14 C -0.082 4.082 15 C -0.257 4.257 16 C 0.070 3.930 17 O -0.154 6.154 18 C -0.477 4.477 19 H 0.096 0.904 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.186 1.186 26 C -0.212 4.212 27 C -0.076 4.076 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.147 0.853 44 H 0.124 0.876 45 H 0.095 0.905 46 H 0.146 0.854 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.700 26.590 17.437 31.912 hybrid contribution 0.151 -0.982 -1.176 1.539 sum 2.852 25.609 16.261 30.469 Atomic orbital electron populations 1.21813 0.94565 1.01052 1.01441 1.20627 0.95890 0.96123 0.94221 1.21764 1.01108 0.93471 1.02574 1.22497 1.00530 1.03082 0.97036 1.22970 0.96795 0.81835 0.95654 0.89474 1.23490 1.03454 0.96099 0.94330 1.23157 1.04048 0.93675 0.81544 1.49973 1.57014 1.20927 1.10687 1.20608 0.78982 0.81259 0.86594 1.90509 1.60865 1.75994 1.16644 1.20437 1.01705 0.92502 0.96499 1.19266 0.95537 0.96947 1.01766 1.20865 0.98754 0.93261 0.95364 1.21230 0.97974 1.03289 1.03173 1.19658 0.93747 0.90621 0.88935 1.83507 1.49597 1.30383 1.51873 1.20714 1.02831 0.95415 1.28698 0.90394 1.25300 1.02722 0.93289 0.97576 1.69733 1.39859 1.08585 1.38339 0.85199 0.78434 0.78172 0.78786 1.19257 1.18889 1.18606 1.20490 1.01064 0.95916 1.03683 1.20887 0.95933 0.97101 0.93634 0.90575 0.94072 0.94430 0.92345 0.93083 0.90390 0.89814 0.94367 0.94523 0.86740 0.87985 0.88385 0.88264 0.85622 0.86539 0.85280 0.87647 0.90533 0.85432 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.80 71.98 0.56 -1.89 16 2 C -0.07 -1.21 0.60 -52.18 -0.03 -1.24 16 3 C -0.13 -1.64 8.31 71.98 0.60 -1.04 16 4 C -0.17 -4.52 8.17 71.98 0.59 -3.93 16 5 C 0.13 1.86 3.24 41.79 0.14 1.99 16 6 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 7 C -0.14 -0.79 7.11 30.84 0.22 -0.57 16 8 C 0.10 0.69 8.40 83.09 0.70 1.39 16 9 N -0.65 -11.03 2.98 -834.22 -2.48 -13.52 16 10 C 0.53 13.30 6.47 87.66 0.57 13.87 16 11 O -0.56 -19.66 12.20 -3.04 -0.04 -19.70 16 12 C -0.07 -1.52 5.66 29.10 0.16 -1.36 16 13 C -0.13 -4.28 4.38 -19.83 -0.09 -4.37 16 14 C -0.06 -2.44 9.69 22.25 0.22 -2.22 16 15 C -0.24 -11.32 9.17 22.39 0.21 -11.11 16 16 C 0.12 5.99 6.65 22.58 0.15 6.14 16 17 O -0.25 -14.14 8.59 -22.76 -0.20 -14.34 16 18 C -0.40 -24.76 9.95 67.92 0.68 -24.09 16 19 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 20 C 0.01 0.56 5.49 84.83 0.47 1.02 16 21 N -0.92 -57.04 13.96 21.61 0.30 -56.74 16 22 Si 0.97 47.19 28.62 68.60 1.96 49.15 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 26 C -0.19 -7.96 9.99 22.39 0.22 -7.74 16 27 C -0.06 -1.92 9.69 22.25 0.22 -1.70 16 28 H 0.08 0.99 6.47 -2.39 -0.02 0.97 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.87 5.60 -2.39 -0.01 0.86 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.62 7.64 -2.39 -0.02 0.61 16 34 H 0.08 2.83 4.08 -22.91 -0.09 2.74 16 35 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 37 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 38 H 0.10 0.57 6.17 -2.39 -0.01 0.56 16 39 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.13 1.85 8.08 -2.39 -0.02 1.83 16 42 H 0.12 1.93 8.09 -2.38 -0.02 1.91 16 43 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 44 H 0.11 5.50 5.64 -2.91 -0.02 5.48 16 45 H 0.29 16.07 8.31 -92.70 -0.77 15.30 16 46 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 47 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -78.73 371.33 5.99 -72.74 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.88 Total: 19.25 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 5.57 Total: -36.84 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -2.18 Total: -70.26 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.23 Total: -34.04 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.96 Total: 49.15 kcal Total: -78.73 5.99 -72.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647650836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.834 kcal (2) G-P(sol) polarization free energy of solvation -78.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds