Wall clock time and date at job start Tue Mar 31 2020 12:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 C 1.52996 * 109.47051 * 184.78278 * 3 2 1 5 5 H 1.08995 * 110.00259 * 305.25862 * 4 3 2 6 6 C 1.54315 * 109.77373 * 66.41631 * 4 3 2 7 7 C 1.55158 * 102.86529 * 141.88445 * 6 4 3 8 8 C 1.54904 * 101.58027 * 324.30458 * 7 6 4 9 9 N 1.47027 * 109.88538 * 184.16023 * 4 3 2 10 10 C 1.34781 * 125.64266 * 61.68197 * 9 4 3 11 11 O 1.21281 * 120.00077 * 4.61633 * 10 9 4 12 12 C 1.50696 * 119.99846 * 184.61990 * 10 9 4 13 13 C 1.50696 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.38305 * 119.92597 * 90.00126 * 13 12 10 15 15 C 1.38100 * 120.06693 * 180.02562 * 14 13 12 16 16 C 1.38884 * 119.93170 * 359.97438 * 15 14 13 17 17 O 1.35745 * 120.07253 * 180.02562 * 16 15 14 18 18 C 1.34831 * 117.00422 * 185.45213 * 17 16 15 19 19 H 1.08002 * 119.99667 * 354.56986 * 18 17 16 20 20 C 1.38650 * 119.99944 * 174.83747 * 18 17 16 21 21 N 1.31559 * 120.00500 * 359.72913 * 20 18 17 22 22 Si 1.86808 * 119.99651 * 179.72515 * 20 18 17 23 23 H 1.48498 * 109.46858 * 90.00661 * 22 20 18 24 24 H 1.48500 * 109.46819 * 210.00014 * 22 20 18 25 25 H 1.48492 * 109.47203 * 330.00423 * 22 20 18 26 26 C 1.38878 * 119.85927 * 0.27428 * 16 15 14 27 27 C 1.38099 * 119.93399 * 359.43395 * 26 16 15 28 28 H 1.09003 * 109.47147 * 299.99571 * 1 2 3 29 29 H 1.08998 * 109.47777 * 59.99531 * 1 2 3 30 30 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47147 * 240.00428 * 2 1 3 32 32 H 1.08995 * 109.47186 * 120.00017 * 2 1 3 33 33 H 1.08999 * 109.47123 * 64.78906 * 3 2 1 34 34 H 1.09003 * 109.47348 * 304.78642 * 3 2 1 35 35 H 1.08999 * 110.92762 * 23.46743 * 6 4 3 36 36 H 1.09005 * 110.74376 * 260.21736 * 6 4 3 37 37 H 1.09001 * 110.99851 * 206.22732 * 7 6 4 38 38 H 1.08996 * 111.00392 * 82.37759 * 7 6 4 39 39 H 1.09009 * 110.36507 * 278.16979 * 8 7 6 40 40 H 1.08998 * 110.46135 * 155.89855 * 8 7 6 41 41 H 1.09004 * 109.47102 * 59.99789 * 12 10 9 42 42 H 1.09000 * 109.47177 * 300.00416 * 12 10 9 43 43 H 1.07994 * 119.96698 * 0.02562 * 14 13 12 44 44 H 1.08001 * 120.03543 * 179.97438 * 15 14 13 45 45 H 0.97001 * 120.00338 * 179.97438 * 21 20 18 46 46 H 1.08010 * 120.03425 * 179.72197 * 26 16 15 47 47 H 1.07994 * 119.97205 * 180.27084 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5652 1.4442 -0.1203 5 1 4.0019 0.8303 0.6674 6 6 3.9803 0.9010 -1.5037 7 6 5.1905 1.7971 -1.8777 8 6 4.7651 3.1604 -1.2777 9 7 4.0731 2.8204 -0.0213 10 6 3.9341 3.6342 1.0441 11 8 3.4218 3.2187 2.0618 12 6 4.4151 5.0604 0.9706 13 6 4.1439 5.7503 2.2826 14 6 5.0957 5.7240 3.2857 15 6 4.8499 6.3548 4.4894 16 6 3.6457 7.0165 4.6918 17 8 3.4014 7.6380 5.8736 18 6 2.1718 8.1636 6.0462 19 1 1.4626 8.1571 5.2317 20 6 1.8197 8.7172 7.2677 21 7 2.6835 8.7250 8.2599 22 14 0.1187 9.4523 7.5044 23 1 -0.8105 8.4023 7.9935 24 1 0.1892 10.5530 8.4986 25 1 -0.3746 9.9856 6.2093 26 6 2.6900 7.0367 3.6844 27 6 2.9441 6.4091 2.4808 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.7483 1.9310 0.9298 34 1 1.6083 1.9805 -0.8440 35 1 3.1738 1.0206 -2.2270 36 1 4.2816 -0.1443 -1.4335 37 1 5.3065 1.8653 -2.9594 38 1 6.1054 1.4330 -1.4104 39 1 4.0871 3.6784 -1.9561 40 1 5.6406 3.7768 -1.0738 41 1 3.8880 5.5809 0.1710 42 1 5.4860 5.0727 0.7677 43 1 6.0320 5.2097 3.1275 44 1 5.5934 6.3336 5.2725 45 1 2.4373 9.1127 9.1143 46 1 1.7507 7.5466 3.8405 47 1 2.2031 6.4282 1.6954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772106699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:14 Heat of formation + Delta-G solvation = -53.556392 kcal Electronic energy + Delta-G solvation = -26078.271231 eV Core-core repulsion = 22419.029131 eV Total energy + Delta-G solvation = -3659.242099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.34323 -38.95850 -37.70664 -36.30469 -34.94018 -32.46391 -31.96801 -31.01194 -30.09757 -29.93640 -26.62973 -25.89009 -25.10007 -23.10141 -22.06647 -21.90639 -21.08532 -20.30987 -18.88786 -17.91846 -17.09750 -16.90611 -16.46403 -15.37885 -15.35585 -14.74749 -14.54370 -14.36008 -14.10197 -13.95154 -13.73118 -13.48261 -13.43537 -13.18083 -13.04587 -12.85696 -12.63838 -12.46773 -12.18664 -11.88717 -11.73878 -11.52192 -11.45057 -11.23405 -11.20890 -11.17531 -10.98492 -10.78778 -10.69136 -10.60428 -10.56454 -10.38278 -9.57084 -9.26580 -8.76550 -8.66725 -8.08281 -7.09655 -6.39339 -3.97849 2.30899 2.32206 2.82091 3.00473 3.16614 3.18490 3.22048 4.01704 4.21064 4.24877 4.52081 4.60893 4.73081 4.85443 4.92504 5.01354 5.05667 5.11423 5.14519 5.24108 5.31878 5.32301 5.36917 5.38907 5.44545 5.51838 5.61243 5.62483 5.67285 5.72183 5.72946 5.79654 5.85901 5.91480 5.99265 6.11811 6.16569 6.28022 6.40165 6.48501 6.77035 6.98254 7.11892 7.30664 7.43893 7.50116 7.54204 7.90728 8.06164 8.36559 9.06501 9.77613 10.78948 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.002671 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.330207 B =10479.206225 C =11561.009081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.131 4.131 4 C 0.138 3.862 5 H 0.073 0.927 6 C -0.127 4.127 7 C -0.134 4.134 8 C 0.100 3.900 9 N -0.626 5.626 10 C 0.526 3.474 11 O -0.516 6.516 12 C -0.075 4.075 13 C -0.169 4.169 14 C -0.059 4.059 15 C -0.191 4.191 16 C 0.157 3.843 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -14.266 -23.017 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.169 4.169 4 C 0.035 3.965 5 H 0.091 0.909 6 C -0.165 4.165 7 C -0.172 4.172 8 C -0.024 4.024 9 N -0.363 5.363 10 C 0.315 3.685 11 O -0.390 6.390 12 C -0.115 4.115 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.251 4.251 27 C -0.075 4.075 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.400 -14.283 -21.909 26.263 hybrid contribution -0.906 0.339 0.022 0.968 sum 1.493 -13.944 -21.887 25.994 Atomic orbital electron populations 1.21759 0.95777 1.01434 1.01982 1.21467 0.96008 0.96430 1.01861 1.21978 0.94393 0.97243 1.03313 1.21531 0.94302 0.83381 0.97332 0.90904 1.22728 0.98145 0.99719 0.95942 1.22783 0.98462 0.94798 1.01197 1.22286 0.96769 0.97425 0.85873 1.48721 1.57367 1.14520 1.15698 1.20746 0.78803 0.87497 0.81480 1.90741 1.42863 1.76045 1.29342 1.20395 1.02105 0.91051 0.97922 1.18648 0.96856 1.06230 0.95326 1.20390 0.97690 0.97317 0.92372 1.20150 0.97486 1.04880 0.98536 1.19374 0.93224 0.90338 0.86757 1.83976 1.33290 1.61556 1.29412 1.21324 0.88661 1.37668 0.99008 0.89113 1.25279 0.99655 0.97287 0.94321 1.70042 1.34625 1.42406 1.02867 0.85721 0.80436 0.78657 0.78663 1.19895 1.20289 1.19219 1.21100 1.01536 1.08016 0.94479 1.20496 0.94993 0.95801 0.96169 0.92535 0.92900 0.92843 0.92085 0.91934 0.90418 0.92047 0.90443 0.90243 0.89912 0.90580 0.91498 0.90481 0.89181 0.89227 0.87454 0.86562 0.92086 0.85610 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.12 -1.04 5.84 -26.73 -0.16 -1.19 16 3 C -0.13 -1.39 4.68 -26.73 -0.12 -1.51 16 4 C 0.14 1.39 2.88 -66.96 -0.19 1.19 16 5 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.13 -0.82 5.48 -24.90 -0.14 -0.96 16 7 C -0.13 -0.75 7.08 -24.58 -0.17 -0.93 16 8 C 0.10 0.73 6.65 -2.54 -0.02 0.71 16 9 N -0.63 -7.02 3.07 -163.03 -0.50 -7.52 16 10 C 0.53 7.85 7.57 -10.99 -0.08 7.76 16 11 O -0.52 -10.16 15.20 5.56 0.08 -10.08 16 12 C -0.07 -1.01 4.91 -29.04 -0.14 -1.15 16 13 C -0.17 -3.08 4.38 -104.58 -0.46 -3.54 16 14 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 15 C -0.19 -4.31 9.99 -39.39 -0.39 -4.70 16 16 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16 17 O -0.18 -5.31 9.76 0.06 0.00 -5.30 16 18 C -0.39 -11.29 9.49 30.88 0.29 -11.00 16 19 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -26.02 13.67 55.48 0.76 -25.26 16 22 Si 0.94 21.13 29.55 -169.99 -5.02 16.10 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 C -0.23 -5.35 9.17 -39.40 -0.36 -5.71 16 27 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 7.30 -51.93 -0.38 0.05 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.11 6.89 -51.93 -0.36 0.75 16 34 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 35 H 0.08 0.45 7.79 -51.93 -0.40 0.05 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.08 0.49 7.50 -51.93 -0.39 0.10 16 41 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 42 H 0.09 0.99 7.71 -51.93 -0.40 0.59 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 47 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -34.52 382.05 -9.17 -43.70 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.55 Total: 2.83 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.70 Total: -20.23 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.26 Total: -32.78 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.52 -9.17 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772106699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.861 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds