Wall clock time and date at job start Tue Mar 31 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 C 1.52996 * 109.47051 * 184.78278 * 3 2 1 5 5 H 1.08995 * 110.00259 * 305.25862 * 4 3 2 6 6 C 1.54315 * 109.77373 * 66.41631 * 4 3 2 7 7 C 1.55158 * 102.86529 * 141.88445 * 6 4 3 8 8 C 1.54904 * 101.58027 * 324.30458 * 7 6 4 9 9 N 1.47027 * 109.88538 * 184.16023 * 4 3 2 10 10 C 1.34781 * 125.64266 * 61.68197 * 9 4 3 11 11 O 1.21281 * 120.00077 * 4.61633 * 10 9 4 12 12 C 1.50696 * 119.99846 * 184.61990 * 10 9 4 13 13 C 1.50696 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.38305 * 119.92597 * 90.00126 * 13 12 10 15 15 C 1.38100 * 120.06693 * 180.02562 * 14 13 12 16 16 C 1.38884 * 119.93170 * 359.97438 * 15 14 13 17 17 O 1.35745 * 120.07253 * 180.02562 * 16 15 14 18 18 C 1.34831 * 117.00422 * 185.45213 * 17 16 15 19 19 H 1.08002 * 119.99667 * 354.56986 * 18 17 16 20 20 C 1.38650 * 119.99944 * 174.83747 * 18 17 16 21 21 N 1.31559 * 120.00500 * 359.72913 * 20 18 17 22 22 Si 1.86808 * 119.99651 * 179.72515 * 20 18 17 23 23 H 1.48498 * 109.46858 * 90.00661 * 22 20 18 24 24 H 1.48500 * 109.46819 * 210.00014 * 22 20 18 25 25 H 1.48492 * 109.47203 * 330.00423 * 22 20 18 26 26 C 1.38878 * 119.85927 * 0.27428 * 16 15 14 27 27 C 1.38099 * 119.93399 * 359.43395 * 26 16 15 28 28 H 1.09003 * 109.47147 * 299.99571 * 1 2 3 29 29 H 1.08998 * 109.47777 * 59.99531 * 1 2 3 30 30 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47147 * 240.00428 * 2 1 3 32 32 H 1.08995 * 109.47186 * 120.00017 * 2 1 3 33 33 H 1.08999 * 109.47123 * 64.78906 * 3 2 1 34 34 H 1.09003 * 109.47348 * 304.78642 * 3 2 1 35 35 H 1.08999 * 110.92762 * 23.46743 * 6 4 3 36 36 H 1.09005 * 110.74376 * 260.21736 * 6 4 3 37 37 H 1.09001 * 110.99851 * 206.22732 * 7 6 4 38 38 H 1.08996 * 111.00392 * 82.37759 * 7 6 4 39 39 H 1.09009 * 110.36507 * 278.16979 * 8 7 6 40 40 H 1.08998 * 110.46135 * 155.89855 * 8 7 6 41 41 H 1.09004 * 109.47102 * 59.99789 * 12 10 9 42 42 H 1.09000 * 109.47177 * 300.00416 * 12 10 9 43 43 H 1.07994 * 119.96698 * 0.02562 * 14 13 12 44 44 H 1.08001 * 120.03543 * 179.97438 * 15 14 13 45 45 H 0.97001 * 120.00338 * 179.97438 * 21 20 18 46 46 H 1.08010 * 120.03425 * 179.72197 * 26 16 15 47 47 H 1.07994 * 119.97205 * 180.27084 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5652 1.4442 -0.1203 5 1 4.0019 0.8303 0.6674 6 6 3.9803 0.9010 -1.5037 7 6 5.1905 1.7971 -1.8777 8 6 4.7651 3.1604 -1.2777 9 7 4.0731 2.8204 -0.0213 10 6 3.9341 3.6342 1.0441 11 8 3.4218 3.2187 2.0618 12 6 4.4151 5.0604 0.9706 13 6 4.1439 5.7503 2.2826 14 6 5.0957 5.7240 3.2857 15 6 4.8499 6.3548 4.4894 16 6 3.6457 7.0165 4.6918 17 8 3.4014 7.6380 5.8736 18 6 2.1718 8.1636 6.0462 19 1 1.4626 8.1571 5.2317 20 6 1.8197 8.7172 7.2677 21 7 2.6835 8.7250 8.2599 22 14 0.1187 9.4523 7.5044 23 1 -0.8105 8.4023 7.9935 24 1 0.1892 10.5530 8.4986 25 1 -0.3746 9.9856 6.2093 26 6 2.6900 7.0367 3.6844 27 6 2.9441 6.4091 2.4808 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.7483 1.9310 0.9298 34 1 1.6083 1.9805 -0.8440 35 1 3.1738 1.0206 -2.2270 36 1 4.2816 -0.1443 -1.4335 37 1 5.3065 1.8653 -2.9594 38 1 6.1054 1.4330 -1.4104 39 1 4.0871 3.6784 -1.9561 40 1 5.6406 3.7768 -1.0738 41 1 3.8880 5.5809 0.1710 42 1 5.4860 5.0727 0.7677 43 1 6.0320 5.2097 3.1275 44 1 5.5934 6.3336 5.2725 45 1 2.4373 9.1127 9.1143 46 1 1.7507 7.5466 3.8405 47 1 2.2031 6.4282 1.6954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772106699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:13 Heat of formation + Delta-G solvation = -74.299315 kcal Electronic energy + Delta-G solvation = -26079.170711 eV Core-core repulsion = 22419.029131 eV Total energy + Delta-G solvation = -3660.141580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.36072 -40.65196 -38.91859 -37.94505 -35.69033 -34.40772 -33.18276 -32.14426 -31.79406 -30.71242 -28.20449 -27.02217 -26.55822 -24.04653 -23.65587 -22.70427 -22.33155 -21.35784 -19.93464 -19.78194 -18.83514 -18.06518 -17.27683 -16.65823 -16.45167 -16.18065 -16.06835 -15.78971 -15.53733 -15.28636 -15.03827 -14.61737 -14.46079 -14.37891 -14.17873 -13.99227 -13.79617 -13.62053 -13.47465 -13.01506 -12.93366 -12.77589 -12.54181 -12.46194 -12.31283 -12.27886 -12.12844 -11.99062 -11.93836 -11.82871 -11.52476 -11.38131 -11.19940 -10.86861 -10.69959 -9.78603 -9.57239 -8.91716 -8.48629 -6.16993 0.59313 0.64988 1.32546 1.42495 1.50668 1.71739 2.08067 2.16678 2.82070 3.14025 3.50454 3.58249 3.71905 3.85739 3.86990 4.01804 4.10273 4.15589 4.16392 4.20001 4.28128 4.42150 4.44730 4.54537 4.56865 4.59884 4.64371 4.77866 4.80601 4.89660 4.91020 4.96633 5.02951 5.06437 5.07500 5.12953 5.16892 5.22197 5.28063 5.34336 5.38741 5.42903 5.52962 5.59455 5.69617 5.75991 6.01433 6.20523 6.61027 6.95792 7.29155 7.76887 8.74949 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.002671 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.330207 B =10479.206225 C =11561.009081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.125 4.125 4 C 0.130 3.870 5 H 0.050 0.950 6 C -0.119 4.119 7 C -0.127 4.127 8 C 0.088 3.912 9 N -0.621 5.621 10 C 0.521 3.479 11 O -0.580 6.580 12 C -0.072 4.072 13 C -0.145 4.145 14 C -0.058 4.058 15 C -0.205 4.205 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.252 1.252 26 C -0.243 4.243 27 C -0.060 4.060 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.113 0.887 45 H 0.273 0.727 46 H 0.118 0.882 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 -15.545 -27.946 32.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.163 4.163 4 C 0.027 3.973 5 H 0.068 0.932 6 C -0.157 4.157 7 C -0.165 4.165 8 C -0.033 4.033 9 N -0.355 5.355 10 C 0.311 3.689 11 O -0.459 6.459 12 C -0.111 4.111 13 C -0.146 4.146 14 C -0.075 4.075 15 C -0.225 4.225 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.491 4.491 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.190 1.190 24 H -0.192 1.192 25 H -0.175 1.175 26 C -0.262 4.262 27 C -0.078 4.078 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.131 0.869 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.631 -15.597 -26.950 31.249 hybrid contribution -0.808 0.503 1.230 1.556 sum 1.822 -15.094 -25.720 29.877 Atomic orbital electron populations 1.21770 0.95664 1.02130 1.01427 1.21452 0.96094 0.95277 1.02521 1.21895 0.95148 0.98121 1.01166 1.21685 0.93639 0.82807 0.99209 0.93164 1.22721 0.99047 1.00501 0.93391 1.22806 0.97720 0.93173 1.02752 1.22678 0.97429 0.98998 0.84195 1.48758 1.56302 1.14454 1.16011 1.20882 0.78257 0.88225 0.81518 1.90739 1.45966 1.77270 1.31932 1.20494 1.04977 0.89918 0.95693 1.19248 0.95166 1.03228 0.96975 1.20852 0.99523 0.96109 0.91065 1.20435 0.96671 1.05210 1.00154 1.19914 0.95161 0.92016 0.86621 1.83936 1.34018 1.64234 1.31772 1.21823 0.89118 1.38260 0.99913 0.88319 1.26620 1.04465 0.97488 0.93519 1.70188 1.37409 1.44711 1.03696 0.84581 0.74308 0.77944 0.79314 1.19023 1.19205 1.17528 1.21218 1.00863 1.08675 0.95486 1.20898 0.96468 0.94901 0.95563 0.94566 0.91978 0.91536 0.89452 0.93134 0.94940 0.91206 0.89105 0.88917 0.87163 0.90669 0.89733 0.88880 0.85881 0.85522 0.83705 0.86894 0.91790 0.86456 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.12 -1.86 5.84 30.59 0.18 -1.68 16 3 C -0.12 -2.54 4.68 30.59 0.14 -2.40 16 4 C 0.13 2.36 2.88 45.34 0.13 2.49 16 5 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 6 C -0.12 -1.05 5.48 31.78 0.17 -0.87 16 7 C -0.13 -0.79 7.08 31.98 0.23 -0.56 16 8 C 0.09 0.85 6.65 86.86 0.58 1.43 16 9 N -0.62 -12.08 3.07 -788.10 -2.42 -14.50 16 10 C 0.52 14.37 7.57 87.66 0.66 15.04 16 11 O -0.58 -22.86 15.20 -3.03 -0.05 -22.91 16 12 C -0.07 -1.62 4.91 29.10 0.14 -1.48 16 13 C -0.15 -4.94 4.38 -19.83 -0.09 -5.03 16 14 C -0.06 -2.14 9.69 22.25 0.22 -1.92 16 15 C -0.21 -9.58 9.99 22.39 0.22 -9.35 16 16 C 0.11 6.09 6.65 22.58 0.15 6.24 16 17 O -0.23 -14.87 9.76 -22.70 -0.22 -15.09 16 18 C -0.42 -25.50 9.49 67.92 0.64 -24.86 16 19 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 20 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 21 N -0.92 -58.73 13.67 21.61 0.30 -58.43 16 22 Si 1.02 44.75 29.55 68.60 2.03 46.78 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 26 C -0.24 -11.59 9.17 22.39 0.21 -11.39 16 27 C -0.06 -2.31 9.69 22.25 0.22 -2.09 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.96 7.30 -2.39 -0.02 0.94 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.03 0.95 6.89 -2.39 -0.02 0.94 16 34 H 0.07 1.26 8.04 -2.39 -0.02 1.25 16 35 H 0.09 0.61 7.79 -2.39 -0.02 0.59 16 36 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.11 0.17 8.14 -2.39 -0.02 0.16 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.09 0.64 7.50 -2.39 -0.02 0.63 16 41 H 0.12 2.08 8.08 -2.38 -0.02 2.06 16 42 H 0.13 2.02 7.71 -2.39 -0.02 2.01 16 43 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 44 H 0.11 5.18 8.06 -2.91 -0.02 5.15 16 45 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 46 H 0.12 5.65 5.64 -2.91 -0.02 5.64 16 47 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -84.62 382.05 5.57 -79.05 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.95 Total: 24.18 kcal Atomic # 6 Polarization: -44.06 SS G_CDS: 4.99 Total: -39.08 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -2.12 Total: -72.93 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.27 Total: -38.00 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -84.62 5.57 -79.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772106699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.750 kcal (2) G-P(sol) polarization free energy of solvation -84.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds