Wall clock time and date at job start Tue Mar 31 2020 12:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 C 1.53002 * 109.47060 * 185.01214 * 3 2 1 5 5 H 1.08999 * 109.99831 * 55.60541 * 4 3 2 6 6 C 1.54328 * 109.88226 * 294.51053 * 4 3 2 7 7 C 1.55155 * 103.10288 * 218.47973 * 6 4 3 8 8 C 1.54906 * 101.58368 * 35.41411 * 7 6 4 9 9 N 1.47322 * 110.06208 * 176.78366 * 4 3 2 10 10 C 1.34770 * 125.61145 * 298.24249 * 9 4 3 11 11 O 1.21278 * 120.00605 * 354.75873 * 10 9 4 12 12 C 1.50706 * 119.99854 * 174.75982 * 10 9 4 13 13 C 1.50701 * 109.47182 * 180.02562 * 12 10 9 14 14 C 1.38300 * 119.93071 * 269.72747 * 13 12 10 15 15 C 1.38098 * 120.07024 * 179.72526 * 14 13 12 16 16 C 1.38876 * 119.92773 * 0.56939 * 15 14 13 17 17 O 1.35753 * 120.07312 * 179.67979 * 16 15 14 18 18 C 1.34828 * 117.00475 * 185.75136 * 17 16 15 19 19 H 1.08000 * 119.99667 * 5.38331 * 18 17 16 20 20 C 1.38651 * 119.99675 * 185.38284 * 18 17 16 21 21 N 1.31557 * 119.99529 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00369 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47199 * 90.00021 * 22 20 18 24 24 H 1.48501 * 109.47460 * 209.99981 * 22 20 18 25 25 H 1.48496 * 109.47296 * 330.00151 * 22 20 18 26 26 C 1.38877 * 119.86284 * 359.70502 * 16 15 14 27 27 C 1.38101 * 119.93317 * 359.97438 * 26 16 15 28 28 H 1.09000 * 109.46954 * 300.00129 * 1 2 3 29 29 H 1.09003 * 109.47242 * 59.99212 * 1 2 3 30 30 H 1.08994 * 109.47720 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47141 * 240.00210 * 2 1 3 32 32 H 1.08999 * 109.47183 * 120.00289 * 2 1 3 33 33 H 1.09004 * 109.46793 * 65.01636 * 3 2 1 34 34 H 1.09000 * 109.47357 * 305.01411 * 3 2 1 35 35 H 1.08999 * 110.71823 * 100.02431 * 6 4 3 36 36 H 1.09001 * 110.72093 * 336.93652 * 6 4 3 37 37 H 1.08996 * 111.00197 * 153.49060 * 7 6 4 38 38 H 1.08995 * 111.00621 * 277.33726 * 7 6 4 39 39 H 1.09000 * 110.36566 * 81.82338 * 8 7 6 40 40 H 1.08995 * 110.36974 * 204.04206 * 8 7 6 41 41 H 1.09001 * 109.46976 * 300.00198 * 12 10 9 42 42 H 1.09008 * 109.47081 * 60.00184 * 12 10 9 43 43 H 1.08012 * 119.96559 * 359.97438 * 14 13 12 44 44 H 1.07995 * 120.03799 * 180.26978 * 15 14 13 45 45 H 0.97008 * 120.00145 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.03907 * 179.97438 * 26 16 15 47 47 H 1.07999 * 119.97054 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 -0.1260 5 1 3.8660 0.8909 -1.0155 6 6 4.1959 0.8046 1.1287 7 6 5.4517 1.6814 1.3767 8 6 4.9425 3.0813 0.9516 9 7 4.0638 2.8282 -0.2048 10 6 3.7642 3.7165 -1.1730 11 8 3.1026 3.3715 -2.1290 12 6 4.2513 5.1388 -1.0676 13 6 3.7833 5.9203 -2.2681 14 6 4.5734 5.9831 -3.4015 15 6 4.1448 6.6937 -4.5053 16 6 2.9243 7.3555 -4.4721 17 8 2.5031 8.0603 -5.5532 18 6 1.3686 8.7754 -5.4137 19 1 0.8861 8.8400 -4.4496 20 6 0.8214 9.4278 -6.5079 21 7 -0.2853 10.1260 -6.3717 22 14 1.6555 9.3155 -8.1755 23 1 1.1207 8.1463 -8.9188 24 1 1.3893 10.5563 -8.9468 25 1 3.1196 9.1545 -7.9869 26 6 2.1358 7.2953 -3.3305 27 6 2.5670 6.5775 -2.2323 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.7519 1.9297 0.9316 34 1 1.6052 1.9816 -0.8417 35 1 4.4800 -0.2294 0.9329 36 1 3.5124 0.8614 1.9758 37 1 5.7335 1.6712 2.4296 38 1 6.2826 1.3605 0.7485 39 1 4.3787 3.5422 1.7626 40 1 5.7789 3.7176 0.6626 41 1 3.8525 5.5931 -0.1606 42 1 5.3407 5.1479 -1.0298 43 1 5.5249 5.4724 -3.4248 44 1 4.7602 6.7388 -5.3916 45 1 -0.6684 10.5822 -7.1373 46 1 1.1863 7.8092 -3.3015 47 1 1.9544 6.5306 -1.3440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772106700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:18 Heat of formation + Delta-G solvation = -52.440001 kcal Electronic energy + Delta-G solvation = -26092.687964 eV Core-core repulsion = 22433.494275 eV Total energy + Delta-G solvation = -3659.193689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.36218 -39.10887 -37.78255 -36.45935 -34.95704 -32.50601 -32.06934 -31.14516 -30.18760 -29.98606 -26.86368 -25.90829 -24.93764 -23.10638 -22.09816 -22.03151 -21.05262 -20.29847 -18.92761 -17.84200 -17.20690 -17.13459 -16.52046 -15.43750 -15.35013 -14.93571 -14.54936 -14.40279 -13.98823 -13.89504 -13.80793 -13.64089 -13.52027 -13.17399 -13.10233 -12.83065 -12.61742 -12.46594 -12.17583 -12.16015 -11.93093 -11.57977 -11.56211 -11.25941 -11.21569 -11.19665 -10.97461 -10.86911 -10.70810 -10.64623 -10.62013 -10.10304 -9.61884 -9.35612 -8.81468 -8.70353 -8.17532 -7.25064 -6.37437 -4.03474 2.20187 2.21731 2.77620 2.96306 3.25461 3.29787 3.44223 4.18768 4.22272 4.28021 4.49442 4.53332 4.70611 4.83758 4.90774 4.92532 4.97427 5.03438 5.09223 5.13863 5.20738 5.26235 5.32122 5.33142 5.42366 5.50290 5.57802 5.61205 5.65216 5.68113 5.70118 5.72227 5.81453 5.84889 5.98965 6.09634 6.14242 6.19307 6.36059 6.39297 6.62449 6.85527 7.08718 7.28536 7.36596 7.49273 7.67455 7.85036 8.08879 8.31974 8.98237 9.61603 10.70434 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.002641 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.312387 B =10597.634945 C =11444.714024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.131 4.131 4 C 0.138 3.862 5 H 0.073 0.927 6 C -0.128 4.128 7 C -0.134 4.134 8 C 0.100 3.900 9 N -0.626 5.626 10 C 0.526 3.474 11 O -0.517 6.517 12 C -0.077 4.077 13 C -0.161 4.161 14 C -0.062 4.062 15 C -0.191 4.191 16 C 0.162 3.838 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.219 4.219 27 C -0.058 4.058 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.279 0.721 46 H 0.133 0.867 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.616 -18.229 18.560 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.169 4.169 4 C 0.035 3.965 5 H 0.091 0.909 6 C -0.166 4.166 7 C -0.172 4.172 8 C -0.024 4.024 9 N -0.363 5.363 10 C 0.315 3.685 11 O -0.391 6.391 12 C -0.117 4.117 13 C -0.162 4.162 14 C -0.080 4.080 15 C -0.210 4.210 16 C 0.110 3.890 17 O -0.123 6.123 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.238 4.238 27 C -0.076 4.076 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.150 0.850 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.151 -18.156 17.603 27.250 hybrid contribution 0.055 0.048 -0.559 0.564 sum 10.206 -18.108 17.044 26.880 Atomic orbital electron populations 1.21764 0.95719 1.01445 1.02089 1.21458 0.96079 0.96343 1.01783 1.21971 0.94600 0.97373 1.02980 1.21606 0.93967 0.82728 0.98199 0.90886 1.22729 0.96996 0.99416 0.97427 1.22778 0.97851 0.94524 1.02058 1.22286 0.93717 0.97680 0.88676 1.48785 1.49284 1.12929 1.25307 1.20696 0.79965 0.86931 0.80882 1.90741 1.38404 1.79296 1.30637 1.20422 1.01681 0.90760 0.98819 1.18716 0.97427 1.04633 0.95412 1.20393 0.98272 0.97203 0.92136 1.20139 0.96295 1.04839 0.99739 1.19126 0.92533 0.90202 0.87158 1.83585 1.41119 1.54600 1.33036 1.20766 1.00040 1.26416 0.99103 0.87691 1.24464 0.95138 0.95327 0.99114 1.69652 1.18546 1.31362 1.32372 0.86179 0.81034 0.77630 0.82056 1.19912 1.20813 1.18335 1.21224 1.02338 1.06044 0.94168 1.20557 0.94365 0.95411 0.97293 0.92860 0.92466 0.92838 0.91976 0.92122 0.92010 0.90405 0.90238 0.90452 0.89886 0.90592 0.91461 0.90464 0.89016 0.89127 0.87263 0.86559 0.91109 0.84975 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.00 5.68 -26.73 -0.15 -1.15 16 3 C -0.13 -1.36 4.68 -26.73 -0.13 -1.48 16 4 C 0.14 1.35 2.90 -66.78 -0.19 1.16 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.13 -0.79 5.61 -24.90 -0.14 -0.93 16 7 C -0.13 -0.72 7.09 -24.58 -0.17 -0.89 16 8 C 0.10 0.70 6.65 -2.53 -0.02 0.68 16 9 N -0.63 -6.80 3.08 -162.79 -0.50 -7.30 16 10 C 0.53 7.61 7.58 -10.99 -0.08 7.53 16 11 O -0.52 -9.91 15.25 5.56 0.08 -9.82 16 12 C -0.08 -1.00 4.92 -29.03 -0.14 -1.14 16 13 C -0.16 -2.81 4.38 -104.58 -0.46 -3.27 16 14 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 15 C -0.19 -4.01 9.99 -39.40 -0.39 -4.40 16 16 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 17 O -0.22 -5.98 8.59 0.05 0.00 -5.98 16 18 C -0.39 -11.25 9.90 30.88 0.31 -10.94 16 19 H 0.11 3.11 5.53 -52.49 -0.29 2.82 16 20 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 21 N -0.88 -26.00 13.96 55.48 0.77 -25.23 16 22 Si 0.91 22.26 28.62 -169.99 -4.86 17.40 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.22 -4.98 9.13 -39.40 -0.36 -5.34 16 27 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.06 0.41 7.57 -51.93 -0.39 0.02 16 33 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 34 H 0.08 1.09 6.97 -51.93 -0.36 0.72 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.44 7.78 -51.93 -0.40 0.03 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.46 7.51 -51.93 -0.39 0.07 16 41 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 42 H 0.09 0.94 7.71 -51.92 -0.40 0.54 16 43 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.13 3.14 5.71 -52.48 -0.30 2.84 16 47 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -33.38 381.45 -9.03 -42.41 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.59 Total: 1.52 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.69 Total: -18.76 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.27 Total: -32.52 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.09 Total: -15.80 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.86 Total: 17.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.38 -9.03 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772106700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.026 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds