Wall clock time and date at job start Tue Mar 31 2020 11:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47201 * 2 1 4 4 C 1.53005 * 109.47327 * 119.99987 * 2 1 3 5 5 N 1.46502 * 109.46864 * 304.99667 * 4 2 1 6 6 C 1.34777 * 119.99559 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00046 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99686 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46990 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.46934 * 305.97546 * 9 8 6 11 11 C 1.50700 * 109.47299 * 65.97885 * 9 8 6 12 12 H 1.08008 * 119.99531 * 26.90748 * 11 9 8 13 13 C 1.37869 * 120.00160 * 206.90965 * 11 9 8 14 14 N 1.31508 * 120.00032 * 353.27812 * 13 11 9 15 15 Si 1.86806 * 120.00073 * 173.54969 * 13 11 9 16 16 H 1.48497 * 109.46895 * 179.72442 * 15 13 11 17 17 H 1.48495 * 109.46957 * 299.72695 * 15 13 11 18 18 H 1.48501 * 109.46761 * 59.72686 * 15 13 11 19 19 C 1.50705 * 109.47056 * 185.97689 * 9 8 6 20 20 C 1.38237 * 120.00118 * 294.44966 * 19 9 8 21 21 C 1.38237 * 119.99818 * 179.78603 * 20 19 9 22 22 C 1.38236 * 120.00003 * 0.44191 * 21 20 19 23 23 C 1.38236 * 119.99991 * 359.81061 * 22 21 20 24 24 C 1.38228 * 119.99825 * 114.71859 * 19 9 8 25 25 C 1.52998 * 109.47182 * 240.00118 * 2 1 3 26 26 C 1.52998 * 117.50173 * 128.61772 * 25 2 1 27 27 C 1.52992 * 60.00014 * 252.51347 * 26 25 2 28 28 H 1.09007 * 109.46652 * 299.99917 * 1 2 3 29 29 H 1.08993 * 109.47285 * 60.00080 * 1 2 3 30 30 H 1.09003 * 109.47006 * 180.02562 * 1 2 3 31 31 H 0.96705 * 114.00571 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47146 * 185.00119 * 4 2 1 33 33 H 1.08995 * 109.46642 * 64.99746 * 4 2 1 34 34 H 0.97002 * 120.00062 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47229 * 60.00363 * 8 6 5 36 36 H 1.09003 * 109.47630 * 300.00294 * 8 6 5 37 37 H 0.97008 * 120.00303 * 354.69126 * 14 13 11 38 38 H 1.08005 * 119.99967 * 359.97438 * 20 19 9 39 39 H 1.07999 * 119.99448 * 180.27078 * 21 20 19 40 40 H 1.07997 * 119.99991 * 179.83259 * 22 21 20 41 41 H 1.07993 * 119.99965 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00249 * 359.97438 * 24 19 9 43 43 H 1.09006 * 115.54806 * 274.32831 * 25 2 1 44 44 H 1.08996 * 117.49804 * 0.02562 * 26 25 2 45 45 H 1.09003 * 117.49623 * 145.01888 * 26 25 2 46 46 H 1.09007 * 117.49638 * 252.51223 * 27 26 25 47 47 H 1.09000 * 117.50104 * 107.49215 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 1.4560 -0.1036 2.4424 6 6 1.7641 -0.5774 3.6659 7 8 2.5254 -1.5148 3.7792 8 6 1.1629 0.0576 4.8932 9 6 1.6731 -0.6636 6.1425 10 1 1.4787 -1.7321 6.0500 11 6 3.1554 -0.4331 6.2855 12 1 3.6055 0.4581 5.8734 13 6 3.9370 -1.3597 6.9423 14 7 3.3742 -2.3764 7.5578 15 14 5.7949 -1.1667 6.9643 16 1 6.3992 -2.2820 7.7363 17 1 6.3116 -1.1912 5.5723 18 1 6.1507 0.1265 7.6017 19 6 0.9617 -0.1270 7.3579 20 6 1.1530 1.1854 7.7475 21 6 0.4970 1.6788 8.8599 22 6 -0.3430 0.8571 9.5879 23 6 -0.5302 -0.4568 9.2013 24 6 0.1224 -0.9489 8.0864 25 6 2.0400 -0.7212 -1.2492 26 6 3.0740 0.0052 -2.1117 27 6 1.6357 -0.1495 -2.6095 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.9703 1.4237 -0.0004 32 1 3.1263 -0.6443 1.2952 33 1 1.7516 -1.7715 1.2056 34 1 0.8469 0.6459 2.3517 35 1 0.0766 -0.0194 4.8470 36 1 1.4511 1.1079 4.9373 37 1 2.4076 -2.4336 7.6159 38 1 1.8125 1.8263 7.1811 39 1 0.6431 2.7054 9.1616 40 1 -0.8534 1.2418 10.4585 41 1 -1.1868 -1.0986 9.7698 42 1 -0.0240 -1.9754 7.7844 43 1 2.1267 -1.8045 -1.1642 44 1 3.3913 0.9967 -1.7890 45 1 3.8415 -0.6001 -2.5942 46 1 1.4568 -0.8566 -3.4196 47 1 1.0063 0.7405 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356276708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:08 Heat of formation + Delta-G solvation = -48.633757 kcal Electronic energy + Delta-G solvation = -26616.890760 eV Core-core repulsion = 22957.862122 eV Total energy + Delta-G solvation = -3659.028638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.90847 -38.87325 -38.14414 -35.51507 -34.41172 -33.83156 -31.43420 -30.91111 -30.09948 -28.98331 -26.89783 -24.93958 -23.29150 -22.57920 -22.45182 -21.64036 -20.35606 -20.07861 -19.39904 -17.29642 -17.04374 -16.55726 -16.08575 -15.61542 -15.28820 -14.98910 -14.42435 -14.35553 -14.01649 -13.93466 -13.64046 -13.18950 -12.98232 -12.77722 -12.59878 -12.56284 -12.33646 -12.26773 -11.94438 -11.83107 -11.62575 -11.42761 -11.21296 -10.88230 -10.79200 -10.70917 -10.42125 -10.37278 -10.15698 -10.04801 -10.02264 -9.66465 -9.01719 -8.63121 -8.55825 -8.26246 -8.12808 -7.62495 -6.20632 -3.89255 2.20130 2.25727 3.41849 3.48503 3.51464 3.56199 3.62247 3.72100 4.06398 4.38502 4.52790 4.62037 4.62479 4.69395 4.82474 5.02250 5.08951 5.36633 5.42139 5.51485 5.54644 5.60619 5.63110 5.64479 5.65874 5.77377 5.80887 5.85215 5.90236 5.93450 6.01616 6.04868 6.11539 6.18803 6.33054 6.43788 6.70529 6.80293 6.88292 6.94277 7.22241 7.24143 7.39437 7.42575 7.74571 7.87026 8.06445 8.25115 8.53527 8.98411 9.04746 9.79507 11.18892 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.003464 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.436290 B = 8080.527019 C = 9410.403488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.152 3.848 3 O -0.555 6.555 4 C 0.103 3.897 5 N -0.743 5.743 6 C 0.512 3.488 7 O -0.501 6.501 8 C -0.116 4.116 9 C 0.073 3.927 10 H 0.049 0.951 11 C -0.566 4.566 12 H 0.044 0.956 13 C 0.032 3.968 14 N -0.907 5.907 15 Si 1.060 2.940 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.291 1.291 19 C -0.033 4.033 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.183 4.183 26 C -0.177 4.177 27 C -0.167 4.167 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.378 0.622 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.395 0.605 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.271 0.729 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 6.675 -14.581 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.111 3.889 3 O -0.362 6.362 4 C -0.022 4.022 5 N -0.400 5.400 6 C 0.299 3.701 7 O -0.373 6.373 8 C -0.156 4.156 9 C 0.054 3.946 10 H 0.067 0.933 11 C -0.604 4.604 12 H 0.063 0.937 13 C -0.174 4.174 14 N -0.542 5.542 15 Si 0.889 3.111 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.217 1.217 19 C -0.033 4.033 20 C -0.125 4.125 21 C -0.148 4.148 22 C -0.171 4.171 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.202 4.202 26 C -0.214 4.214 27 C -0.204 4.204 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.227 0.773 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.230 0.770 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.805 5.341 -13.970 16.043 hybrid contribution -0.931 0.931 -0.480 1.401 sum -6.735 6.272 -14.450 17.132 Atomic orbital electron populations 1.21709 0.91992 1.02724 1.02786 1.20889 0.95016 0.81769 0.91261 1.86533 1.27116 1.25769 1.96791 1.21782 0.98592 0.97420 0.84439 1.46122 1.50915 1.37494 1.05430 1.20871 0.81504 0.83909 0.83837 1.90748 1.33352 1.27300 1.85893 1.21655 0.98776 1.01016 0.94172 1.17861 0.95466 0.95872 0.85415 0.93273 1.21526 0.90606 1.08871 1.39374 0.93720 1.25564 1.06046 0.92696 0.93044 1.70730 1.13417 1.30322 1.39737 0.83687 0.75510 0.75669 0.76201 1.20945 1.21579 1.21726 1.20856 0.91167 0.92815 0.98493 1.20932 0.98679 0.96098 0.96747 1.21017 0.98336 0.98994 0.96476 1.20824 1.01306 0.94559 1.00374 1.20963 1.00445 0.95502 0.97383 1.21074 0.97909 0.99515 0.96363 1.22988 1.05081 1.00012 0.92126 1.22974 0.92665 1.02201 1.03551 1.22881 0.98074 1.03145 0.96283 0.91655 0.91705 0.90861 0.77337 0.91604 0.91223 0.76980 0.91698 0.90276 0.91792 0.86679 0.87448 0.87587 0.87458 0.87166 0.86972 0.88217 0.88736 0.88934 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.46 37.16 0.31 -0.94 16 2 C 0.15 1.52 0.88 -90.62 -0.08 1.44 16 3 O -0.55 -5.72 12.08 -35.23 -0.43 -6.14 16 4 C 0.10 1.36 4.80 -4.04 -0.02 1.34 16 5 N -0.74 -11.14 5.19 -60.29 -0.31 -11.46 16 6 C 0.51 10.29 7.58 -10.99 -0.08 10.21 16 7 O -0.50 -12.62 15.02 5.55 0.08 -12.54 16 8 C -0.12 -2.28 4.95 -27.88 -0.14 -2.42 16 9 C 0.07 1.76 1.23 -92.92 -0.11 1.65 16 10 H 0.05 1.34 6.59 -51.93 -0.34 1.00 16 11 C -0.57 -15.53 6.35 -34.44 -0.22 -15.75 16 12 H 0.04 1.23 7.82 -52.48 -0.41 0.82 16 13 C 0.03 0.93 5.45 -17.83 -0.10 0.83 16 14 N -0.91 -27.89 13.56 55.43 0.75 -27.14 16 15 Si 1.06 26.43 29.91 -169.99 -5.08 21.34 16 16 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.03 -0.73 4.53 -104.62 -0.47 -1.20 16 20 C -0.11 -2.20 8.90 -39.58 -0.35 -2.55 16 21 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 22 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 23 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 24 C -0.13 -2.75 9.18 -39.58 -0.36 -3.11 16 25 C -0.18 -1.61 5.15 -90.62 -0.47 -2.08 16 26 C -0.18 -1.39 9.73 -26.74 -0.26 -1.65 16 27 C -0.17 -1.30 9.67 -26.74 -0.26 -1.56 16 28 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 29 H 0.06 0.56 7.29 -51.93 -0.38 0.18 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.38 3.16 7.56 45.56 0.34 3.50 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.40 5.03 6.99 -40.82 -0.29 4.74 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.46 7.96 -51.93 -0.41 1.05 16 37 H 0.27 8.20 6.24 -40.82 -0.25 7.94 16 38 H 0.12 2.33 7.85 -52.48 -0.41 1.92 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 43 H 0.11 0.99 8.11 -51.93 -0.42 0.56 16 44 H 0.10 0.74 6.38 -51.93 -0.33 0.41 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 47 H 0.10 0.79 7.61 -51.93 -0.40 0.39 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -33.91 382.03 -9.69 -43.60 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.66 Total: 10.91 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -3.81 Total: -24.33 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.44 Total: -38.60 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.34 Total: -18.68 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -5.08 Total: 21.34 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.91 -9.69 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356276708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.032 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds