Wall clock time and date at job start Tue Mar 31 2020 11:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47201 * 2 1 4 4 C 1.53005 * 109.47327 * 119.99987 * 2 1 3 5 5 N 1.46502 * 109.46864 * 304.99667 * 4 2 1 6 6 C 1.34777 * 119.99559 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00046 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99686 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46990 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.46934 * 305.97546 * 9 8 6 11 11 C 1.50700 * 109.47299 * 65.97885 * 9 8 6 12 12 H 1.08008 * 119.99531 * 26.90748 * 11 9 8 13 13 C 1.37869 * 120.00160 * 206.90965 * 11 9 8 14 14 N 1.31508 * 120.00032 * 353.27812 * 13 11 9 15 15 Si 1.86806 * 120.00073 * 173.54969 * 13 11 9 16 16 H 1.48497 * 109.46895 * 179.72442 * 15 13 11 17 17 H 1.48495 * 109.46957 * 299.72695 * 15 13 11 18 18 H 1.48501 * 109.46761 * 59.72686 * 15 13 11 19 19 C 1.50705 * 109.47056 * 185.97689 * 9 8 6 20 20 C 1.38237 * 120.00118 * 294.44966 * 19 9 8 21 21 C 1.38237 * 119.99818 * 179.78603 * 20 19 9 22 22 C 1.38236 * 120.00003 * 0.44191 * 21 20 19 23 23 C 1.38236 * 119.99991 * 359.81061 * 22 21 20 24 24 C 1.38228 * 119.99825 * 114.71859 * 19 9 8 25 25 C 1.52998 * 109.47182 * 240.00118 * 2 1 3 26 26 C 1.52998 * 117.50173 * 128.61772 * 25 2 1 27 27 C 1.52992 * 60.00014 * 252.51347 * 26 25 2 28 28 H 1.09007 * 109.46652 * 299.99917 * 1 2 3 29 29 H 1.08993 * 109.47285 * 60.00080 * 1 2 3 30 30 H 1.09003 * 109.47006 * 180.02562 * 1 2 3 31 31 H 0.96705 * 114.00571 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47146 * 185.00119 * 4 2 1 33 33 H 1.08995 * 109.46642 * 64.99746 * 4 2 1 34 34 H 0.97002 * 120.00062 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47229 * 60.00363 * 8 6 5 36 36 H 1.09003 * 109.47630 * 300.00294 * 8 6 5 37 37 H 0.97008 * 120.00303 * 354.69126 * 14 13 11 38 38 H 1.08005 * 119.99967 * 359.97438 * 20 19 9 39 39 H 1.07999 * 119.99448 * 180.27078 * 21 20 19 40 40 H 1.07997 * 119.99991 * 179.83259 * 22 21 20 41 41 H 1.07993 * 119.99965 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00249 * 359.97438 * 24 19 9 43 43 H 1.09006 * 115.54806 * 274.32831 * 25 2 1 44 44 H 1.08996 * 117.49804 * 0.02562 * 26 25 2 45 45 H 1.09003 * 117.49623 * 145.01888 * 26 25 2 46 46 H 1.09007 * 117.49638 * 252.51223 * 27 26 25 47 47 H 1.09000 * 117.50104 * 107.49215 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 1.4560 -0.1036 2.4424 6 6 1.7641 -0.5774 3.6659 7 8 2.5254 -1.5148 3.7792 8 6 1.1629 0.0576 4.8932 9 6 1.6731 -0.6636 6.1425 10 1 1.4787 -1.7321 6.0500 11 6 3.1554 -0.4331 6.2855 12 1 3.6055 0.4581 5.8734 13 6 3.9370 -1.3597 6.9423 14 7 3.3742 -2.3764 7.5578 15 14 5.7949 -1.1667 6.9643 16 1 6.3992 -2.2820 7.7363 17 1 6.3116 -1.1912 5.5723 18 1 6.1507 0.1265 7.6017 19 6 0.9617 -0.1270 7.3579 20 6 1.1530 1.1854 7.7475 21 6 0.4970 1.6788 8.8599 22 6 -0.3430 0.8571 9.5879 23 6 -0.5302 -0.4568 9.2013 24 6 0.1224 -0.9489 8.0864 25 6 2.0400 -0.7212 -1.2492 26 6 3.0740 0.0052 -2.1117 27 6 1.6357 -0.1495 -2.6095 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.9703 1.4237 -0.0004 32 1 3.1263 -0.6443 1.2952 33 1 1.7516 -1.7715 1.2056 34 1 0.8469 0.6459 2.3517 35 1 0.0766 -0.0194 4.8470 36 1 1.4511 1.1079 4.9373 37 1 2.4076 -2.4336 7.6159 38 1 1.8125 1.8263 7.1811 39 1 0.6431 2.7054 9.1616 40 1 -0.8534 1.2418 10.4585 41 1 -1.1868 -1.0986 9.7698 42 1 -0.0240 -1.9754 7.7844 43 1 2.1267 -1.8045 -1.1642 44 1 3.3913 0.9967 -1.7890 45 1 3.8415 -0.6001 -2.5942 46 1 1.4568 -0.8566 -3.4196 47 1 1.0063 0.7405 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356276708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:07 Heat of formation + Delta-G solvation = -70.629210 kcal Electronic energy + Delta-G solvation = -26617.844554 eV Core-core repulsion = 22957.862122 eV Total energy + Delta-G solvation = -3659.982432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07315 -40.23948 -39.59755 -36.47232 -36.03958 -35.18093 -33.31862 -32.03306 -31.61115 -30.45308 -28.10036 -26.70105 -24.83723 -23.68093 -23.18107 -23.14677 -21.77357 -21.31530 -20.75286 -18.90421 -18.20554 -17.99306 -17.40147 -16.89467 -16.58710 -16.36026 -15.73365 -15.71366 -15.63106 -15.39835 -14.98330 -14.65252 -14.48597 -14.05791 -13.98071 -13.66816 -13.60516 -13.43927 -13.31608 -13.16119 -12.89985 -12.64175 -12.61132 -12.28596 -12.08368 -11.99828 -11.96020 -11.72753 -11.51280 -11.47187 -11.11365 -10.95049 -10.72258 -10.57112 -10.35494 -10.00051 -9.64640 -9.27543 -8.44686 -6.11414 0.67310 0.73299 1.47346 1.57593 1.73655 1.87537 2.27439 2.61957 2.82052 3.10323 3.23277 3.36254 3.55796 3.73479 3.90533 4.06167 4.10411 4.13226 4.22854 4.28051 4.29604 4.36819 4.43473 4.47730 4.60408 4.63080 4.74126 4.78350 4.82919 4.85363 4.86595 4.90701 5.04009 5.10149 5.20489 5.23012 5.26593 5.27831 5.40248 5.42640 5.55409 5.74195 5.81738 5.94568 6.23839 6.30657 6.40219 6.64624 6.71487 6.78192 7.50086 7.63866 8.95646 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.003464 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.436290 B = 8080.527019 C = 9410.403488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 O -0.560 6.560 4 C 0.101 3.899 5 N -0.719 5.719 6 C 0.511 3.489 7 O -0.562 6.562 8 C -0.111 4.111 9 C 0.075 3.925 10 H 0.004 0.996 11 C -0.557 4.557 12 H 0.038 0.962 13 C -0.025 4.025 14 N -0.944 5.944 15 Si 1.097 2.903 16 H -0.288 1.288 17 H -0.286 1.286 18 H -0.267 1.267 19 C -0.056 4.056 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.125 4.125 24 C -0.153 4.153 25 C -0.195 4.195 26 C -0.176 4.176 27 C -0.157 4.157 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.386 0.614 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.261 0.739 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 9.263 -14.820 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.124 3.876 3 O -0.369 6.369 4 C -0.024 4.024 5 N -0.375 5.375 6 C 0.298 3.702 7 O -0.439 6.439 8 C -0.151 4.151 9 C 0.056 3.944 10 H 0.022 0.978 11 C -0.595 4.595 12 H 0.056 0.944 13 C -0.223 4.223 14 N -0.582 5.582 15 Si 0.921 3.079 16 H -0.214 1.214 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.057 4.057 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.162 4.162 23 C -0.143 4.143 24 C -0.171 4.171 25 C -0.214 4.214 26 C -0.213 4.213 27 C -0.194 4.194 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.236 0.764 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.248 0.752 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.982 7.994 -14.253 17.771 hybrid contribution -0.688 0.191 -0.446 0.842 sum -7.670 8.186 -14.699 18.490 Atomic orbital electron populations 1.21752 0.91215 1.03184 1.03244 1.20740 0.95460 0.81464 0.89983 1.86519 1.28036 1.25615 1.96697 1.21936 0.97828 0.97506 0.85113 1.45869 1.49977 1.37065 1.04574 1.20986 0.80739 0.83149 0.85321 1.90727 1.36287 1.30002 1.86881 1.21564 1.00256 1.01007 0.92276 1.17680 0.94327 0.93896 0.88508 0.97765 1.21782 0.92623 1.07820 1.37262 0.94364 1.26730 1.09563 0.92781 0.93227 1.70813 1.12834 1.32001 1.42541 0.83208 0.71765 0.76507 0.76374 1.21392 1.21245 1.19164 1.20629 0.92817 0.94132 0.98112 1.21012 0.99579 0.95327 0.98182 1.21410 0.97064 1.00742 0.95049 1.21313 1.00243 0.93711 1.00903 1.21304 0.99973 0.96692 0.96296 1.21134 0.99188 0.98972 0.97844 1.22903 1.06560 0.99858 0.92086 1.23074 0.92942 1.02343 1.02946 1.22931 0.97848 1.03094 0.95505 0.91901 0.90514 0.90474 0.76394 0.93002 0.92104 0.75208 0.89016 0.88718 0.92910 0.86898 0.83955 0.83506 0.84644 0.88619 0.87236 0.87750 0.88099 0.87788 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.46 71.98 0.61 -1.73 16 2 C 0.16 3.14 0.88 -10.79 -0.01 3.13 16 3 O -0.56 -10.63 12.08 -148.98 -1.80 -12.43 16 4 C 0.10 2.70 4.80 86.38 0.41 3.11 16 5 N -0.72 -21.50 5.19 -463.05 -2.40 -23.90 16 6 C 0.51 21.07 7.58 87.66 0.66 21.73 16 7 O -0.56 -29.79 15.02 -3.04 -0.05 -29.83 16 8 C -0.11 -4.42 4.95 29.85 0.15 -4.27 16 9 C 0.08 3.78 1.23 -12.28 -0.02 3.76 16 10 H 0.00 0.24 6.59 -2.39 -0.02 0.23 16 11 C -0.56 -31.53 6.35 25.60 0.16 -31.37 16 12 H 0.04 2.15 7.82 -2.91 -0.02 2.13 16 13 C -0.02 -1.48 5.45 84.65 0.46 -1.02 16 14 N -0.94 -60.77 13.56 21.44 0.29 -60.48 16 15 Si 1.10 54.49 29.91 68.60 2.05 56.54 16 16 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 C -0.06 -2.55 4.53 -19.87 -0.09 -2.64 16 20 C -0.12 -4.95 8.90 22.27 0.20 -4.75 16 21 C -0.12 -4.14 10.05 22.27 0.22 -3.91 16 22 C -0.14 -4.49 10.05 22.27 0.22 -4.27 16 23 C -0.12 -4.36 10.05 22.27 0.22 -4.14 16 24 C -0.15 -6.55 9.18 22.27 0.20 -6.35 16 25 C -0.20 -3.20 5.15 -10.80 -0.06 -3.26 16 26 C -0.18 -2.47 9.73 30.59 0.30 -2.17 16 27 C -0.16 -2.12 9.67 30.59 0.30 -1.82 16 28 H 0.06 1.09 6.57 -2.38 -0.02 1.07 16 29 H 0.08 1.15 7.29 -2.39 -0.02 1.13 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.39 5.92 7.56 -74.05 -0.56 5.36 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.41 9.93 6.99 -92.71 -0.65 9.28 16 35 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.09 3.46 7.96 -2.39 -0.02 3.44 16 37 H 0.26 16.76 6.24 -92.70 -0.58 16.18 16 38 H 0.11 4.48 7.85 -2.91 -0.02 4.46 16 39 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 40 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.10 4.23 7.95 -2.91 -0.02 4.21 16 43 H 0.11 1.86 8.11 -2.38 -0.02 1.84 16 44 H 0.10 1.36 6.38 -2.39 -0.02 1.34 16 45 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.10 1.35 7.61 -2.39 -0.02 1.33 16 Total: -1.00 -77.31 382.03 2.01 -75.30 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.04 Total: 34.79 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 3.96 Total: -39.98 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.11 Total: -84.38 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.85 Total: -42.26 kcal Atomic # 14 Polarization: 54.49 SS G_CDS: 2.05 Total: 56.54 kcal Total: -77.31 2.01 -75.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356276708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.668 kcal (2) G-P(sol) polarization free energy of solvation -77.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds