Wall clock time and date at job start Tue Mar 31 2020 13:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46426 * 2 1 4 4 C 1.52994 * 109.47624 * 119.99726 * 2 1 3 5 5 C 1.52998 * 109.47318 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47248 * 299.99924 * 5 4 2 7 7 C 1.53000 * 109.46646 * 59.99676 * 6 5 4 8 8 C 1.52996 * 109.47186 * 240.00181 * 2 1 3 9 9 H 1.09000 * 109.47606 * 59.99864 * 8 2 1 10 10 O 1.42900 * 109.47116 * 299.99534 * 8 2 1 11 11 C 1.42906 * 113.99944 * 150.00263 * 10 8 2 12 12 C 1.50696 * 109.46893 * 180.02562 * 11 10 8 13 13 O 1.21284 * 120.00117 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99871 * 180.02562 * 12 11 10 15 15 C 1.39937 * 120.00013 * 174.89146 * 14 12 11 16 16 C 1.39287 * 119.94895 * 325.54137 * 15 14 12 17 17 C 1.38489 * 120.43166 * 179.76029 * 16 15 14 18 18 C 1.37685 * 120.31732 * 0.51921 * 17 16 15 19 19 C 1.40733 * 119.88846 * 359.73686 * 18 17 16 20 20 C 1.41404 * 120.21626 * 180.02562 * 19 18 17 21 21 H 1.08008 * 119.99228 * 25.13881 * 20 19 18 22 22 C 1.39927 * 120.00526 * 205.14330 * 20 19 18 23 23 N 1.30831 * 119.99945 * 16.79485 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 196.78958 * 22 20 19 25 25 H 1.48491 * 109.47303 * 59.99754 * 24 22 20 26 26 H 1.48501 * 109.46990 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46986 * 299.99771 * 24 22 20 28 28 C 1.38241 * 119.94643 * 145.81745 * 15 14 12 29 29 H 1.08997 * 109.46983 * 299.99603 * 1 2 3 30 30 H 1.08997 * 109.47307 * 60.00751 * 1 2 3 31 31 H 1.09006 * 109.46426 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47099 * 59.99858 * 4 2 1 33 33 H 1.09001 * 109.47051 * 300.00562 * 4 2 1 34 34 H 1.09006 * 109.46994 * 180.02562 * 5 4 2 35 35 H 1.08994 * 109.47321 * 60.00227 * 5 4 2 36 36 H 1.09004 * 109.47138 * 300.00486 * 6 5 4 37 37 H 1.09001 * 109.47420 * 179.97438 * 6 5 4 38 38 H 1.09003 * 109.47108 * 60.00874 * 7 6 5 39 39 H 1.09001 * 109.46798 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.46729 * 300.00161 * 11 10 8 41 41 H 1.09003 * 109.47186 * 59.99828 * 11 10 8 42 42 H 0.96995 * 120.00193 * 354.89358 * 14 12 11 43 43 H 1.08001 * 119.78586 * 0.02562 * 16 15 14 44 44 H 1.07999 * 119.83964 * 180.22878 * 17 16 15 45 45 H 1.08001 * 120.05039 * 179.72110 * 18 17 16 46 46 H 0.96996 * 119.99740 * 180.02562 * 23 22 20 47 47 H 1.08001 * 120.16101 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 3.5701 -0.7205 1.2494 6 6 4.0806 -1.4415 0.0002 7 6 3.5704 -0.7203 -1.2490 8 6 2.0400 -0.7212 -1.2492 9 1 1.6767 -0.2074 -2.1392 10 8 1.5638 -2.0685 -1.2492 11 6 1.3701 -2.6165 -2.5547 12 6 0.8688 -4.0327 -2.4357 13 8 0.6950 -4.5244 -1.3407 14 7 0.6146 -4.7531 -3.5460 15 6 0.2522 -6.1004 -3.4382 16 6 0.7980 -6.8886 -2.4277 17 6 0.4426 -8.2218 -2.3087 18 6 -0.4469 -8.7858 -3.1955 19 6 -1.0025 -8.0032 -4.2248 20 6 -1.9171 -8.5752 -5.1390 21 1 -2.4998 -9.4378 -4.8514 22 6 -2.0671 -8.0237 -6.4163 23 7 -1.1583 -7.2094 -6.8881 24 14 -3.5648 -8.4503 -7.4479 25 1 -4.7957 -8.0325 -6.7299 26 1 -3.4865 -7.7421 -8.7507 27 1 -3.6025 -9.9161 -7.6833 28 6 -0.6425 -6.6485 -4.3382 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 1.6768 -1.7488 1.2493 33 1 1.6767 -0.2073 2.1392 34 1 3.9335 -1.2347 2.1393 35 1 3.9330 0.3072 1.2496 36 1 3.7176 -2.4693 0.0000 37 1 5.1706 -1.4407 0.0002 38 1 3.9334 0.3075 -1.2489 39 1 3.9337 -1.2341 -2.1390 40 1 0.6382 -2.0166 -3.0956 41 1 2.3164 -2.6099 -3.0957 42 1 0.6829 -4.3377 -4.4199 43 1 1.4996 -6.4561 -1.7298 44 1 0.8688 -8.8231 -1.5193 45 1 -0.7176 -9.8271 -3.1014 46 1 -1.2624 -6.8268 -7.7733 47 1 -1.0632 -6.0393 -5.1245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456741621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:30 Heat of formation + Delta-G solvation = -85.963438 kcal Electronic energy + Delta-G solvation = -26429.239471 eV Core-core repulsion = 22768.592096 eV Total energy + Delta-G solvation = -3660.647374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.01081 -39.25246 -37.22589 -35.94640 -34.22008 -33.28474 -32.73315 -30.42858 -29.59503 -29.11213 -27.08895 -26.11524 -25.22905 -22.67944 -21.66027 -21.36304 -21.04485 -19.73365 -19.57616 -17.43391 -17.13470 -16.43001 -16.12160 -15.64945 -15.27065 -14.92428 -14.79172 -14.52432 -14.39051 -13.91588 -13.66283 -13.37523 -13.12884 -12.87432 -12.83168 -12.49805 -12.33295 -12.24841 -11.76445 -11.66425 -11.64013 -11.59386 -11.24297 -11.12208 -10.98178 -10.72430 -10.65963 -10.61204 -10.53340 -10.11157 -10.02714 -9.72974 -9.52396 -9.40446 -9.17024 -8.90307 -7.37817 -7.01630 -6.69655 -4.37269 2.57020 2.86374 3.05319 3.08757 3.09532 3.20667 3.36870 3.92889 4.13163 4.50657 4.55609 4.63787 4.67779 4.94315 4.99682 5.02326 5.15181 5.18533 5.19389 5.30968 5.35916 5.37532 5.51241 5.66562 5.68132 5.70321 5.79271 5.82588 6.01344 6.06196 6.15544 6.17584 6.26405 6.28313 6.44064 6.64655 6.69311 6.87267 7.03741 7.05598 7.12768 7.25928 7.62066 7.69610 7.93821 8.03005 8.16817 8.32401 8.56294 8.76450 8.88781 8.96030 10.18684 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.002646 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.662319 B =10580.071425 C =11100.971372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.141 4.141 8 C 0.091 3.909 9 H 0.060 0.940 10 O -0.345 6.345 11 C 0.044 3.956 12 C 0.505 3.495 13 O -0.504 6.504 14 N -0.665 5.665 15 C 0.147 3.853 16 C -0.226 4.226 17 C -0.086 4.086 18 C -0.228 4.228 19 C 0.120 3.880 20 C -0.463 4.463 21 H 0.078 0.922 22 C 0.077 3.923 23 N -0.800 5.800 24 Si 0.908 3.092 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.181 4.181 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.402 0.598 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.279 0.721 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 16.391 6.185 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.179 4.179 8 C 0.033 3.967 9 H 0.078 0.922 10 O -0.262 6.262 11 C -0.036 4.036 12 C 0.291 3.709 13 O -0.378 6.378 14 N -0.310 5.310 15 C 0.055 3.945 16 C -0.247 4.247 17 C -0.105 4.105 18 C -0.248 4.248 19 C 0.117 3.883 20 C -0.493 4.493 21 H 0.096 0.904 22 C -0.140 4.140 23 N -0.426 5.426 24 Si 0.732 3.268 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.190 1.190 28 C -0.203 4.203 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.236 0.764 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.030 16.107 6.959 18.902 hybrid contribution -0.468 0.249 -1.417 1.513 sum 6.561 16.356 5.542 18.474 Atomic orbital electron populations 1.21804 0.94670 1.03025 1.01081 1.21197 0.96244 0.98321 0.94406 0.90508 1.21538 0.95154 1.02010 0.96395 1.21508 0.95946 1.00019 0.97952 1.21435 0.99422 1.00711 0.93841 1.22039 0.95837 1.00999 0.98992 1.22185 0.93151 0.83271 0.98111 0.92233 1.88063 1.86305 1.27179 1.24702 1.22246 1.00905 0.93354 0.87111 1.20178 0.78770 0.87010 0.84981 1.90729 1.49458 1.71274 1.26295 1.43370 1.68377 1.10712 1.08589 1.17572 0.97583 0.80894 0.98410 1.20303 1.07615 0.94137 1.02665 1.20421 0.98032 0.94178 0.97823 1.21044 1.04032 0.98406 1.01304 1.17356 0.89925 0.90334 0.90663 1.19503 1.20146 1.12965 0.96730 0.90398 1.25867 0.96326 0.93545 0.98250 1.69806 1.30837 1.24867 1.17135 0.86380 0.82228 0.79651 0.78517 1.18887 1.20426 1.19026 1.21067 1.01198 0.96245 1.01755 0.92826 0.93128 0.91330 0.90465 0.92401 0.92136 0.92592 0.90761 0.92502 0.91283 0.91865 0.90663 0.90631 0.76400 0.88111 0.89012 0.88842 0.91022 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.05 37.16 0.34 -1.14 16 2 C -0.08 -0.79 2.55 -90.62 -0.23 -1.02 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -1.16 5.06 -26.74 -0.14 -1.29 16 5 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 6 C -0.12 -1.17 5.78 -26.73 -0.15 -1.33 16 7 C -0.14 -1.29 5.63 -26.71 -0.15 -1.44 16 8 C 0.09 0.92 2.35 -26.71 -0.06 0.86 16 9 H 0.06 0.52 7.79 -51.93 -0.40 0.12 16 10 O -0.34 -4.71 7.50 -55.14 -0.41 -5.12 16 11 C 0.04 0.57 6.23 36.00 0.22 0.79 16 12 C 0.51 9.19 7.64 -10.99 -0.08 9.11 16 13 O -0.50 -11.37 14.24 -14.36 -0.20 -11.58 16 14 N -0.66 -12.51 5.33 -9.91 -0.05 -12.56 16 15 C 0.15 3.46 6.25 -83.77 -0.52 2.94 16 16 C -0.23 -5.47 8.66 -39.10 -0.34 -5.81 16 17 C -0.09 -2.04 10.02 -39.69 -0.40 -2.44 16 18 C -0.23 -5.72 9.79 -38.84 -0.38 -6.10 16 19 C 0.12 3.21 5.57 -106.85 -0.59 2.62 16 20 C -0.46 -12.22 9.05 -37.75 -0.34 -12.57 16 21 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 22 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 23 N -0.80 -20.00 10.94 55.55 0.61 -19.39 16 24 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 28 C -0.18 -4.62 8.60 -38.68 -0.33 -4.95 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 32 H 0.08 1.00 7.68 -51.93 -0.40 0.60 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 40 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 42 H 0.40 6.22 8.82 -40.82 -0.36 5.86 16 43 H 0.10 2.43 6.47 -52.49 -0.34 2.09 16 44 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 45 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 46 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 47 H 0.12 3.13 6.17 -52.49 -0.32 2.81 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -30.37 375.80 -10.48 -40.85 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.64 Total: 9.90 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -3.41 Total: -21.19 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.55 Total: -31.95 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.62 Total: -16.70 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.37 -10.48 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456741621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.109 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds