Wall clock time and date at job start Tue Mar 31 2020 12:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35978 * 117.00177 * 2 1 4 4 C 1.38828 * 120.17293 * 0.02562 * 3 2 1 5 5 C 1.37692 * 119.93347 * 179.97438 * 4 3 2 6 6 C 1.38898 * 120.84071 * 359.60458 * 5 4 3 7 7 C 1.39228 * 118.96576 * 0.61113 * 6 5 4 8 8 C 1.37946 * 120.31605 * 359.57478 * 7 6 5 9 9 C 1.50699 * 119.85970 * 180.02562 * 8 7 6 10 10 N 1.46895 * 109.46995 * 260.00527 * 9 8 7 11 11 C 1.46904 * 110.99809 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47208 * 174.69817 * 11 10 9 13 13 C 1.50697 * 115.54854 * 65.17436 * 12 11 10 14 14 H 1.08003 * 119.99346 * 264.97126 * 13 12 11 15 15 C 1.37872 * 120.00250 * 84.96310 * 13 12 11 16 16 N 1.31506 * 120.00308 * 353.06879 * 15 13 12 17 17 Si 1.86809 * 119.99710 * 173.06744 * 15 13 12 18 18 H 1.48500 * 109.46969 * 60.00089 * 17 15 13 19 19 H 1.48500 * 109.46830 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47177 * 300.00011 * 17 15 13 21 21 C 1.52998 * 117.49979 * 279.49695 * 12 11 10 22 22 C 1.53002 * 117.49941 * 210.83975 * 12 11 10 23 23 O 1.36236 * 111.20849 * 180.65411 * 6 5 4 24 24 C 1.43771 * 109.22338 * 340.92909 * 23 6 5 25 25 H 1.08999 * 110.74954 * 146.10844 * 24 23 6 26 26 C 1.53004 * 110.74661 * 269.27650 * 24 23 6 27 27 C 1.51654 * 132.11323 * 179.00858 * 5 4 3 28 28 H 1.09001 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47160 * 299.99945 * 1 2 3 30 30 H 1.08997 * 109.46774 * 60.00379 * 1 2 3 31 31 H 1.07998 * 120.02931 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.84104 * 179.60408 * 7 6 5 33 33 H 1.09009 * 109.46463 * 20.00365 * 9 8 7 34 34 H 1.08995 * 109.47777 * 139.99693 * 9 8 7 35 35 H 1.00900 * 111.00499 * 56.04763 * 10 9 8 36 36 H 1.08996 * 109.47637 * 294.70381 * 11 10 9 37 37 H 1.09006 * 109.46931 * 54.69884 * 11 10 9 38 38 H 0.97004 * 120.00426 * 185.03984 * 16 15 13 39 39 H 1.09006 * 117.49876 * 0.02562 * 21 12 11 40 40 H 1.09001 * 117.49678 * 145.01408 * 21 12 11 41 41 H 1.08993 * 117.49784 * 214.98209 * 22 12 11 42 42 H 1.09003 * 117.49858 * 0.02562 * 22 12 11 43 43 H 1.08998 * 109.47089 * 56.08317 * 26 24 23 44 44 H 1.09000 * 109.46837 * 176.08809 * 26 24 23 45 45 H 1.09001 * 109.46938 * 296.08063 * 26 24 23 46 46 H 1.09003 * 110.93693 * 77.74451 * 27 5 4 47 47 H 1.08996 * 110.94125 * 314.07091 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2938 2.3782 0.0005 5 6 1.9241 3.6024 0.0011 6 6 3.3103 3.6896 0.0093 7 6 4.0598 2.5162 0.0041 8 6 3.4310 1.2884 -0.0002 9 6 4.2523 0.0249 -0.0053 10 7 4.3171 -0.5115 -1.3713 11 6 5.1122 -1.7460 -1.4149 12 6 5.0476 -2.3448 -2.8214 13 6 5.6798 -1.5165 -3.9101 14 1 5.0722 -0.8471 -4.5010 15 6 7.0338 -1.6131 -4.1516 16 7 7.7963 -2.3216 -3.3478 17 14 7.7852 -0.7377 -5.6209 18 1 7.5452 0.7230 -5.5026 19 1 9.2467 -0.9983 -5.6581 20 1 7.1609 -1.2423 -6.8702 21 6 3.8057 -3.1609 -3.1855 22 6 5.1427 -3.8668 -2.9463 23 8 3.7224 4.9880 0.0228 24 6 2.6450 5.8312 -0.4193 25 1 2.6679 6.7902 0.0983 26 6 2.7023 6.0339 -1.9347 27 6 1.3896 5.0214 -0.0178 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2152 2.3255 0.0005 32 1 5.1386 2.5676 0.0039 33 1 5.2602 0.2454 0.3467 34 1 3.7907 -0.7113 0.6527 35 1 4.6822 0.1762 -2.0130 36 1 6.1484 -1.5200 -1.1634 37 1 4.7119 -2.4616 -0.6966 38 1 8.7580 -2.3305 -3.4743 39 1 3.0344 -3.2708 -2.4231 40 1 3.4460 -3.0988 -4.2126 41 1 5.6621 -4.2689 -3.8161 42 1 5.2508 -4.4415 -2.0264 43 1 2.6909 5.0639 -2.4317 44 1 1.8393 6.6170 -2.2561 45 1 3.6174 6.5653 -2.1959 46 1 1.0348 5.3171 0.9696 47 1 0.6010 5.1308 -0.7622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584209010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:23 Heat of formation + Delta-G solvation = -18.795617 kcal Electronic energy + Delta-G solvation = -26773.712517 eV Core-core repulsion = 23115.977758 eV Total energy + Delta-G solvation = -3657.734759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26881 -39.36667 -37.02961 -36.33850 -34.29237 -33.04423 -31.84604 -30.97058 -29.35707 -27.97987 -27.14133 -25.63763 -24.79892 -22.82663 -22.27985 -21.67152 -20.91258 -20.61819 -18.97223 -17.68201 -17.16905 -16.53880 -16.11976 -15.80382 -15.50308 -14.80001 -14.57376 -14.37311 -14.30717 -14.04708 -13.86001 -13.69334 -13.40960 -12.86316 -12.78111 -12.47804 -12.45992 -12.37603 -12.18764 -11.67413 -11.48482 -11.46973 -11.30522 -11.20250 -11.11758 -10.89534 -10.79119 -10.51138 -10.40013 -10.14692 -10.03454 -9.35266 -8.79543 -8.67006 -8.34721 -7.97060 -7.54057 -7.34295 -5.95768 -4.01305 1.27464 1.51476 3.19803 3.33989 3.38949 3.42110 3.49157 3.73494 4.24102 4.39779 4.45510 4.68790 4.79311 4.93931 5.03470 5.09682 5.12225 5.20431 5.27783 5.32624 5.36026 5.43290 5.51782 5.54368 5.60970 5.68865 5.69628 5.83913 5.93944 5.95746 6.07472 6.21001 6.28746 6.40462 6.42450 6.58855 6.67124 6.72460 6.93660 6.95447 7.01547 7.15905 7.25536 7.58054 7.61875 7.65413 7.94946 8.10756 8.40221 8.58654 9.01683 9.63855 11.12141 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.003849 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.013786 B = 7272.674753 C = 8778.143562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.293 6.293 3 C 0.128 3.872 4 C -0.165 4.165 5 C -0.141 4.141 6 C 0.065 3.935 7 C -0.092 4.092 8 C -0.069 4.069 9 C 0.106 3.894 10 N -0.669 5.669 11 C 0.107 3.893 12 C 0.053 3.947 13 C -0.492 4.492 14 H 0.058 0.942 15 C 0.071 3.929 16 N -0.881 5.881 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.199 4.199 22 C -0.163 4.163 23 O -0.302 6.302 24 C 0.078 3.922 25 H 0.111 0.889 26 C -0.173 4.173 27 C -0.104 4.104 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.346 0.654 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.259 0.741 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.114 13.383 8.978 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C 0.082 3.918 4 C -0.184 4.184 5 C -0.142 4.142 6 C 0.021 3.979 7 C -0.112 4.112 8 C -0.071 4.071 9 C -0.023 4.023 10 N -0.300 5.300 11 C -0.021 4.021 12 C 0.052 3.948 13 C -0.530 4.530 14 H 0.077 0.923 15 C -0.132 4.132 16 N -0.518 5.518 17 Si 0.714 3.286 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.236 4.236 22 C -0.201 4.201 23 O -0.217 6.217 24 C 0.022 3.978 25 H 0.129 0.871 26 C -0.230 4.230 27 C -0.141 4.141 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.164 0.836 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.216 12.822 9.077 21.187 hybrid contribution 0.973 0.996 -0.762 1.587 sum -13.243 13.818 8.315 20.868 Atomic orbital electron populations 1.23006 0.79380 1.03755 1.00603 1.86257 1.20241 1.25664 1.88379 1.18513 0.91504 0.83996 0.97818 1.20254 0.99665 0.90454 1.08045 1.20389 0.93704 0.94525 1.05574 1.19288 0.92099 0.85145 1.01414 1.20010 0.99988 0.88013 1.03162 1.18968 0.90874 0.94729 1.02487 1.20682 0.95915 0.92064 0.93610 1.60463 1.57462 1.07857 1.04265 1.21432 0.94054 0.89731 0.96930 1.18698 0.94307 0.89280 0.92496 1.20430 0.92626 1.23943 1.15970 0.92340 1.24982 0.97327 0.94862 0.96022 1.69979 1.04414 1.40123 1.37241 0.86767 0.77977 0.80063 0.83817 1.20306 1.21440 1.20278 1.22850 0.91388 1.09649 0.99759 1.22530 0.99209 0.97993 1.00393 1.86889 1.38908 1.13645 1.82227 1.23344 0.84382 0.94258 0.95846 0.87099 1.22250 1.02887 1.03263 0.94584 1.21831 0.98360 0.90989 1.02964 0.88396 0.93373 0.92945 0.85536 0.84909 0.95171 0.90477 0.83556 0.94737 0.94420 0.93124 0.91630 0.91092 0.90441 0.92235 0.91537 0.90951 0.91332 0.89354 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.82 101.05 0.99 1.28 16 2 O -0.29 -4.41 9.73 -19.67 -0.19 -4.61 16 3 C 0.13 1.93 6.66 -39.20 -0.26 1.67 16 4 C -0.17 -2.14 9.03 -39.56 -0.36 -2.49 16 5 C -0.14 -1.80 6.26 -104.11 -0.65 -2.45 16 6 C 0.07 0.94 6.93 -38.97 -0.27 0.67 16 7 C -0.09 -1.42 9.67 -39.32 -0.38 -1.80 16 8 C -0.07 -1.12 5.40 -104.57 -0.56 -1.68 16 9 C 0.11 1.86 5.46 -4.98 -0.03 1.83 16 10 N -0.67 -13.76 6.46 -115.05 -0.74 -14.50 16 11 C 0.11 2.46 5.54 -3.82 -0.02 2.44 16 12 C 0.05 1.32 1.56 -155.66 -0.24 1.08 16 13 C -0.49 -13.39 8.32 -34.44 -0.29 -13.67 16 14 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 15 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 16 N -0.88 -25.00 12.95 55.43 0.72 -24.28 16 17 Si 0.89 21.27 29.55 -169.99 -5.02 16.25 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.20 -4.59 9.96 -26.70 -0.27 -4.85 16 22 C -0.16 -3.97 9.46 -26.69 -0.25 -4.22 16 23 O -0.30 -4.13 10.82 -20.49 -0.22 -4.35 16 24 C 0.08 0.75 4.30 -25.84 -0.11 0.64 16 25 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 26 C -0.17 -1.56 9.51 37.16 0.35 -1.21 16 27 C -0.10 -0.96 6.65 -26.52 -0.18 -1.14 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.40 7.67 -51.93 -0.40 0.01 16 30 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 31 H 0.13 1.31 6.32 -52.49 -0.33 0.98 16 32 H 0.13 1.95 8.02 -52.49 -0.42 1.53 16 33 H 0.03 0.51 7.99 -51.92 -0.41 0.10 16 34 H 0.08 1.34 7.84 -51.93 -0.41 0.93 16 35 H 0.35 7.53 8.29 -39.29 -0.33 7.21 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 39 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.07 0.74 8.10 -51.93 -0.42 0.31 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 0.68 7.93 -51.93 -0.41 0.27 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -30.41 386.23 -9.98 -40.39 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.72 Total: 7.33 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.62 Total: -22.06 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.03 Total: -38.78 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.41 Total: -8.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.41 -9.98 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584209010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.598 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds