Wall clock time and date at job start Tue Mar 31 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.64359 * 2 1 4 4 C 1.55164 * 110.71538 * 236.66752 * 2 1 3 5 5 C 1.54907 * 101.57814 * 206.13238 * 4 2 1 6 6 N 1.47431 * 104.83328 * 37.01260 * 5 4 2 7 7 C 1.34773 * 125.64977 * 155.91437 * 6 5 4 8 8 O 1.21281 * 120.00143 * 179.97438 * 7 6 5 9 9 C 1.50702 * 119.99951 * 359.94748 * 7 6 5 10 10 C 1.53007 * 109.47160 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46504 * 305.36402 * 10 9 7 12 12 C 1.50693 * 109.47312 * 65.36618 * 10 9 7 13 13 H 1.08005 * 119.99774 * 34.62018 * 12 10 9 14 14 C 1.37875 * 120.00284 * 214.62443 * 12 10 9 15 15 N 1.31515 * 120.00362 * 186.45075 * 14 12 10 16 16 Si 1.86803 * 119.99957 * 6.44455 * 14 12 10 17 17 H 1.48493 * 109.47089 * 85.02238 * 16 14 12 18 18 H 1.48496 * 109.47328 * 205.02575 * 16 14 12 19 19 H 1.48505 * 109.46833 * 325.02073 * 16 14 12 20 20 C 1.50698 * 109.46985 * 185.37066 * 10 9 7 21 21 C 1.38236 * 119.99795 * 296.35032 * 20 10 9 22 22 C 1.38240 * 119.99641 * 179.74521 * 21 20 10 23 23 C 1.38225 * 120.00184 * 0.53592 * 22 21 20 24 24 C 1.38236 * 120.00116 * 359.73920 * 23 22 21 25 25 C 1.38237 * 119.99929 * 116.62900 * 20 10 9 26 26 C 1.47018 * 108.70166 * 335.86705 * 6 5 4 27 27 H 1.08998 * 110.01281 * 241.57106 * 26 6 5 28 28 C 1.53004 * 109.88038 * 120.47776 * 26 6 5 29 29 O 1.42894 * 109.47100 * 67.19377 * 28 26 6 30 30 H 1.09004 * 109.46725 * 296.85130 * 1 2 3 31 31 H 1.08999 * 109.47191 * 56.85583 * 1 2 3 32 32 H 1.09005 * 109.46941 * 176.85733 * 1 2 3 33 33 H 1.09004 * 111.00419 * 324.20838 * 4 2 1 34 34 H 1.09001 * 111.00269 * 88.05972 * 4 2 1 35 35 H 1.09005 * 110.36515 * 155.84528 * 5 4 2 36 36 H 1.08999 * 110.37224 * 278.17067 * 5 4 2 37 37 H 1.08998 * 109.47010 * 299.99715 * 9 7 6 38 38 H 1.08997 * 109.47187 * 59.99746 * 9 7 6 39 39 H 0.96996 * 119.99902 * 179.97438 * 15 14 12 40 40 H 1.07996 * 120.00152 * 0.02562 * 21 20 10 41 41 H 1.08008 * 119.99653 * 180.29871 * 22 21 20 42 42 H 1.08003 * 120.00046 * 179.76686 * 23 22 21 43 43 H 1.08002 * 120.00408 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00061 * 0.02562 * 25 20 10 45 45 H 1.09007 * 109.46977 * 187.19362 * 28 26 6 46 46 H 1.09006 * 109.47035 * 307.19009 * 28 26 6 47 47 H 0.96703 * 113.99877 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7975 -1.2126 5 6 3.4632 -1.2509 -0.6856 6 7 3.2445 -1.5496 0.7415 7 6 3.9924 -2.3811 1.4936 8 8 3.7194 -2.5519 2.6628 9 6 5.1676 -3.0990 0.8815 10 6 5.8398 -3.9734 1.9420 11 1 6.0997 -3.3615 2.8058 12 6 4.8925 -5.0657 2.3667 13 1 4.2156 -5.5032 1.6478 14 6 4.8898 -5.5065 3.6731 15 7 4.1564 -6.5429 4.0159 16 14 5.9279 -4.6316 4.9562 17 1 5.1739 -3.4718 5.4961 18 1 6.2467 -5.5721 6.0603 19 1 7.1885 -4.1554 4.3322 20 6 7.0901 -4.5880 1.3674 21 6 7.0021 -5.4693 0.3061 22 6 8.1494 -6.0291 -0.2244 23 6 9.3836 -5.7161 0.3136 24 6 9.4711 -4.8392 1.3786 25 6 8.3243 -4.2749 1.9054 26 6 2.0761 -0.7892 1.2085 27 1 2.3717 -0.0993 1.9989 28 6 1.0050 -1.7494 1.7299 29 8 1.4767 -2.3900 2.9169 30 1 -0.3633 0.4642 0.9169 31 1 -0.3633 0.5619 -0.8604 32 1 -0.3633 -1.0262 -0.0563 33 1 1.4450 -1.6560 -1.4348 34 1 2.1849 -0.1553 -2.0869 35 1 3.7959 -2.1447 -1.2135 36 1 4.1932 -0.4492 -0.7979 37 1 4.8222 -3.7262 0.0597 38 1 5.8837 -2.3686 0.5050 39 1 4.1548 -6.8532 4.9349 40 1 6.0375 -5.7171 -0.1116 41 1 8.0811 -6.7139 -1.0568 42 1 10.2797 -6.1563 -0.0984 43 1 10.4354 -4.5949 1.7993 44 1 8.3926 -3.5902 2.7378 45 1 0.0957 -1.1919 1.9547 46 1 0.7914 -2.5022 0.9710 47 1 0.8476 -3.0147 3.3033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331056310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:01 Heat of formation + Delta-G solvation = -53.910895 kcal Electronic energy + Delta-G solvation = -27803.975566 eV Core-core repulsion = 24144.718094 eV Total energy + Delta-G solvation = -3659.257472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.95530 -38.61284 -37.23179 -35.67310 -33.95715 -32.82892 -31.54861 -30.15943 -30.10049 -29.01071 -27.19927 -25.50612 -24.40119 -22.82138 -22.25777 -21.77889 -20.08781 -19.08758 -18.34703 -17.15537 -16.85831 -16.35933 -15.86655 -15.69030 -15.18885 -14.57588 -14.27964 -14.07938 -13.87849 -13.60172 -13.44140 -13.23380 -12.91422 -12.76315 -12.64616 -12.48558 -12.31532 -12.08896 -11.91077 -11.79117 -11.53855 -11.29798 -11.04780 -10.91570 -10.77450 -10.68634 -10.48577 -10.40841 -10.27055 -9.77588 -9.52817 -9.39055 -9.07837 -8.60417 -8.30977 -8.15442 -8.00358 -7.75531 -5.90399 -3.85614 2.14792 2.20087 3.48218 3.52212 3.55158 3.62545 3.72342 4.31893 4.52465 4.58535 4.66644 4.67214 4.87606 5.22035 5.27654 5.32682 5.43386 5.47324 5.52701 5.56215 5.57539 5.60775 5.66193 5.71499 5.73263 5.74420 5.81472 5.91591 5.98696 6.04009 6.08524 6.15157 6.17380 6.28062 6.30021 6.39417 6.64538 6.74264 6.85331 6.96418 7.09643 7.19038 7.33754 7.64656 7.78986 7.89762 8.23611 8.26953 8.61477 9.08755 9.28424 9.75930 11.22695 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.004857 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.442151 B = 5763.580078 C = 7085.368969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.085 0.915 4 C -0.129 4.129 5 C 0.102 3.898 6 N -0.631 5.631 7 C 0.519 3.481 8 O -0.454 6.454 9 C -0.110 4.110 10 C 0.056 3.944 11 H 0.048 0.952 12 C -0.481 4.481 13 H 0.069 0.931 14 C 0.087 3.913 15 N -0.901 5.901 16 Si 0.873 3.127 17 H -0.272 1.272 18 H -0.298 1.298 19 H -0.263 1.263 20 C -0.036 4.036 21 C -0.102 4.102 22 C -0.128 4.128 23 C -0.150 4.150 24 C -0.126 4.126 25 C -0.137 4.137 26 C 0.145 3.855 27 H 0.071 0.929 28 C 0.065 3.935 29 O -0.527 6.527 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.260 0.740 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.043 0.957 46 H 0.038 0.962 47 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 12.071 -11.996 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.167 4.167 5 C -0.022 4.022 6 N -0.371 5.371 7 C 0.306 3.694 8 O -0.321 6.321 9 C -0.151 4.151 10 C 0.036 3.964 11 H 0.066 0.934 12 C -0.517 4.517 13 H 0.087 0.913 14 C -0.114 4.114 15 N -0.539 5.539 16 Si 0.701 3.299 17 H -0.197 1.197 18 H -0.225 1.225 19 H -0.188 1.188 20 C -0.037 4.037 21 C -0.120 4.120 22 C -0.146 4.146 23 C -0.169 4.169 24 C -0.145 4.145 25 C -0.155 4.155 26 C 0.041 3.959 27 H 0.089 0.911 28 C -0.014 4.014 29 O -0.330 6.330 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.317 12.133 -11.191 16.668 hybrid contribution -0.043 -0.076 0.779 0.783 sum -2.360 12.057 -10.413 16.105 Atomic orbital electron populations 1.21872 0.94191 1.02348 1.01868 1.22180 0.96182 0.99096 0.94192 0.89658 1.22877 0.96471 1.00105 0.97252 1.22184 0.96746 1.00452 0.82833 1.48780 1.30683 1.47315 1.10342 1.20501 0.83638 0.78313 0.86924 1.90823 1.67344 1.58640 1.15329 1.21644 0.94749 0.98258 1.00413 1.18132 0.90304 0.94786 0.93134 0.93390 1.20518 1.18135 1.17406 0.95688 0.91314 1.24838 0.94604 0.93855 0.98139 1.69897 1.41206 1.24476 1.18302 0.86937 0.81394 0.80025 0.81512 1.19718 1.22527 1.18763 1.20763 0.95320 0.94927 0.92699 1.20948 0.97680 0.96624 0.96709 1.21039 0.93001 1.00297 1.00243 1.20844 0.97090 1.00521 0.98408 1.20961 0.97727 0.98475 0.97287 1.21159 0.92501 1.01401 1.00413 1.21368 0.86433 0.92494 0.95628 0.91060 1.22610 0.95232 0.94932 0.88659 1.87047 1.44826 1.60591 1.40504 0.92201 0.92335 0.92005 0.90595 0.90208 0.90739 0.92107 0.90319 0.91918 0.93018 0.86377 0.87256 0.87482 0.87432 0.87059 0.93933 0.94362 0.79028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 7.93 37.16 0.29 -0.90 16 2 C -0.10 -0.96 3.48 -88.78 -0.31 -1.27 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.19 6.53 -24.58 -0.16 -1.35 16 5 C 0.10 1.20 6.69 -2.53 -0.02 1.19 16 6 N -0.63 -10.35 3.08 -163.01 -0.50 -10.85 16 7 C 0.52 10.90 7.35 -10.99 -0.08 10.82 16 8 O -0.45 -11.64 12.12 -18.80 -0.23 -11.87 16 9 C -0.11 -2.19 3.95 -27.88 -0.11 -2.30 16 10 C 0.06 1.32 1.28 -92.92 -0.12 1.20 16 11 H 0.05 1.22 4.79 -51.93 -0.25 0.97 16 12 C -0.48 -13.47 6.94 -34.44 -0.24 -13.71 16 13 H 0.07 2.09 8.06 -52.48 -0.42 1.67 16 14 C 0.09 2.62 5.47 -17.82 -0.10 2.52 16 15 N -0.90 -28.47 13.96 55.43 0.77 -27.69 16 16 Si 0.87 23.48 27.04 -169.99 -4.60 18.88 16 17 H -0.27 -7.56 7.11 56.52 0.40 -7.16 16 18 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 19 H -0.26 -6.58 5.14 56.52 0.29 -6.29 16 20 C -0.04 -0.79 4.77 -104.62 -0.50 -1.29 16 21 C -0.10 -2.03 8.87 -39.58 -0.35 -2.38 16 22 C -0.13 -2.23 10.05 -39.59 -0.40 -2.63 16 23 C -0.15 -2.52 10.05 -39.59 -0.40 -2.92 16 24 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 25 C -0.14 -2.78 9.13 -39.58 -0.36 -3.14 16 26 C 0.15 2.10 3.27 -66.95 -0.22 1.89 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 C 0.07 0.98 5.36 37.16 0.20 1.18 16 29 O -0.53 -10.40 10.22 -59.58 -0.61 -11.01 16 30 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.54 6.72 -51.93 -0.35 0.19 16 33 H 0.08 0.73 8.02 -51.93 -0.42 0.31 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.86 7.48 -51.93 -0.39 0.47 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.48 7.51 -51.93 -0.39 1.09 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 40 H 0.12 2.34 7.77 -52.49 -0.41 1.94 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.11 2.25 6.95 -52.49 -0.36 1.88 16 45 H 0.04 0.52 6.31 -51.92 -0.33 0.19 16 46 H 0.04 0.58 7.83 -51.93 -0.41 0.18 16 47 H 0.36 6.03 9.12 45.56 0.42 6.44 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -35.77 366.36 -9.65 -45.43 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.75 Total: 7.32 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -3.26 Total: -15.73 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.27 Total: -38.54 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.84 Total: -22.87 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.60 Total: 18.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.77 -9.65 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331056310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.486 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds