Wall clock time and date at job start Tue Mar 31 2020 12:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 N 1.46905 * 109.47191 * 240.00051 * 2 1 3 5 5 C 1.46902 * 110.99800 * 85.00066 * 4 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 299.99665 * 6 5 4 8 8 C 1.52997 * 109.47164 * 59.99828 * 6 5 4 9 9 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 10 10 C 1.50706 * 109.46953 * 179.97438 * 9 6 5 11 11 H 1.07999 * 119.99816 * 0.02562 * 10 9 6 12 12 C 1.37876 * 120.00344 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99769 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00300 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46755 * 89.99832 * 14 12 10 16 16 H 1.48495 * 109.46931 * 209.99846 * 14 12 10 17 17 H 1.48500 * 109.46738 * 330.00088 * 14 12 10 18 18 C 1.52995 * 109.47240 * 119.99924 * 2 1 3 19 19 C 1.52591 * 109.24271 * 60.55687 * 18 2 1 20 20 C 1.53052 * 109.97684 * 169.67478 * 19 18 2 21 21 S 1.81678 * 108.96550 * 63.70854 * 20 19 18 22 22 O 1.42098 * 108.66111 * 191.34948 * 21 20 19 23 23 O 1.42104 * 108.66115 * 60.01139 * 21 20 19 24 24 C 1.81672 * 101.30546 * 305.68077 * 21 20 19 25 25 C 1.52592 * 109.24121 * 299.44480 * 18 2 1 26 26 H 1.09001 * 109.47129 * 300.00067 * 1 2 3 27 27 H 1.09002 * 109.46808 * 60.00170 * 1 2 3 28 28 H 1.08996 * 109.47051 * 179.97438 * 1 2 3 29 29 H 1.00904 * 110.99696 * 321.04494 * 4 2 1 30 30 H 1.08993 * 109.47737 * 60.00169 * 5 4 2 31 31 H 1.09000 * 109.47263 * 299.99731 * 5 4 2 32 32 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 33 33 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 35 35 H 1.09000 * 109.47140 * 60.00051 * 8 6 5 36 36 H 1.09001 * 109.47230 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47375 * 300.00034 * 8 6 5 38 38 H 1.09000 * 109.47486 * 299.99829 * 9 6 5 39 39 H 1.09001 * 109.47362 * 60.00551 * 9 6 5 40 40 H 0.97000 * 120.00540 * 180.02562 * 13 12 10 41 41 H 1.08998 * 109.23967 * 180.02562 * 18 2 1 42 42 H 1.08996 * 109.38783 * 289.87531 * 19 18 2 43 43 H 1.09002 * 109.38165 * 49.55496 * 19 18 2 44 44 H 1.08993 * 109.58313 * 303.85059 * 20 19 18 45 45 H 1.08997 * 109.62964 * 183.58764 * 20 19 18 46 46 H 1.09000 * 109.54931 * 294.44039 * 24 21 20 47 47 H 1.08998 * 109.54578 * 174.15549 * 24 21 20 48 48 H 1.08999 * 109.38228 * 310.44295 * 25 18 2 49 49 H 1.08999 * 109.38655 * 70.12358 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 3.9922 -1.0863 -3.2862 8 6 1.6452 -1.6889 -3.8952 9 6 2.6599 0.4198 -4.7697 10 6 3.1654 -0.3245 -5.9787 11 1 3.4150 -1.3725 -5.9023 12 6 3.3092 0.3324 -7.1824 13 7 3.0048 1.6084 -7.2755 14 14 3.9364 -0.5899 -8.6808 15 1 2.7878 -1.1730 -9.4197 16 1 4.6709 0.3478 -9.5676 17 1 4.8491 -1.6778 -8.2461 18 6 2.0400 -0.7212 1.2492 19 6 1.5400 -2.1628 1.2370 20 6 2.2419 -2.9690 2.3324 21 16 1.7896 -2.2823 3.9525 22 8 2.6368 -2.8527 4.9405 23 8 0.3799 -2.3721 4.1069 24 6 2.2409 -0.5357 3.7375 25 6 1.5399 0.0102 2.4915 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.4496 -1.4980 -1.4100 30 1 2.7588 1.0462 -2.1183 31 1 1.0871 0.6163 -2.5526 32 1 3.9456 -1.7653 -2.4348 33 1 4.3576 -1.6244 -4.1609 34 1 4.6688 -0.2629 -3.0577 35 1 0.6499 -1.2949 -4.1006 36 1 2.0102 -2.2271 -4.7700 37 1 1.5986 -2.3679 -3.0438 38 1 1.6644 0.8135 -4.9749 39 1 3.3365 1.2434 -4.5415 40 1 3.1055 2.0706 -8.1224 41 1 3.1300 -0.7186 1.2456 42 1 0.4642 -2.1741 1.4115 43 1 1.7521 -2.6110 0.2663 44 1 3.3216 -2.9054 2.1978 45 1 1.9282 -4.0114 2.2777 46 1 3.3207 -0.4503 3.6156 47 1 1.9252 0.0328 4.6123 48 1 1.7521 1.0749 2.3944 49 1 0.4641 -0.1353 2.5886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348208607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:29 Heat of formation + Delta-G solvation = -99.544594 kcal Electronic energy + Delta-G solvation = -25839.910124 eV Core-core repulsion = 22314.117778 eV Total energy + Delta-G solvation = -3525.792346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.35554 -37.43668 -37.02814 -36.30625 -34.36333 -32.33069 -32.20215 -29.86857 -27.17657 -26.91960 -26.37728 -25.27674 -24.00492 -23.07860 -22.02148 -19.74725 -19.04590 -17.99717 -17.13090 -16.67856 -16.29729 -16.00906 -15.62849 -15.29549 -14.79399 -14.54253 -14.36693 -14.21010 -13.73616 -13.41982 -13.26028 -13.01419 -12.97986 -12.50423 -12.44606 -12.36897 -12.29537 -12.13976 -12.01540 -11.88059 -11.81849 -11.36110 -11.14567 -11.04900 -10.95597 -10.88692 -10.80270 -10.62012 -10.52167 -10.31713 -10.24309 -10.13215 -9.73037 -9.05571 -8.86296 -8.34612 -8.15602 -5.99177 -3.99389 -0.27506 2.35318 3.30886 3.34161 3.37832 3.40417 3.59544 4.05583 4.19247 4.30091 4.35136 4.45661 4.54461 4.68132 4.76622 4.95504 5.06808 5.08810 5.24119 5.31684 5.35719 5.36773 5.49689 5.55607 5.60741 5.69410 5.72849 5.84764 5.91180 5.91530 5.97639 6.12535 6.25706 6.28865 6.46026 6.60622 6.74596 6.78369 7.16650 7.17252 7.22185 7.34563 7.60249 7.67225 7.81873 8.00975 8.45179 9.06060 9.63656 11.12472 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032918 B = 0.002476 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.389567 B =11307.202360 C =11599.418495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.090 3.910 3 H 0.081 0.919 4 N -0.682 5.682 5 C 0.070 3.930 6 C -0.058 4.058 7 C -0.115 4.115 8 C -0.129 4.129 9 C 0.034 3.966 10 C -0.507 4.507 11 H 0.059 0.941 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.096 4.096 19 C -0.108 4.108 20 C -0.597 4.597 21 S 2.411 3.589 22 O -0.950 6.950 23 O -0.940 6.940 24 C -0.600 4.600 25 C -0.109 4.109 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.339 0.661 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.012 0.988 39 H 0.014 0.986 40 H 0.259 0.741 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.088 0.912 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 -4.740 21.273 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.021 4.021 3 H 0.099 0.901 4 N -0.314 5.314 5 C -0.058 4.058 6 C -0.059 4.059 7 C -0.173 4.173 8 C -0.186 4.186 9 C -0.004 4.004 10 C -0.545 4.545 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.115 4.115 19 C -0.146 4.146 20 C -0.727 4.727 21 S 2.594 3.406 22 O -0.947 6.947 23 O -0.937 6.937 24 C -0.730 4.730 25 C -0.147 4.147 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.159 0.841 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.150 0.850 48 H 0.107 0.893 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.983 -4.947 22.055 22.799 hybrid contribution -0.188 0.159 -1.812 1.828 sum -3.170 -4.788 20.244 21.042 Atomic orbital electron populations 1.22656 0.97449 1.02470 1.02508 1.21470 0.92503 0.97899 0.90179 0.90073 1.60681 1.56683 1.10080 1.03917 1.22134 0.98866 0.94887 0.89949 1.20629 0.94873 0.96123 0.94260 1.21593 0.95921 0.99829 0.99932 1.21769 0.98737 0.97845 1.00250 1.19119 0.96821 0.93663 0.90755 1.21233 1.42887 0.96300 0.94125 0.92318 1.25015 0.95865 0.94825 0.98889 1.69961 1.49245 1.08981 1.25569 0.86668 0.78944 0.79679 0.83153 1.20828 1.21369 1.19913 1.21333 1.02181 0.93935 0.94059 1.21398 0.99922 0.94074 0.99213 1.30176 1.11486 1.11368 1.19637 1.08185 0.75776 0.78865 0.77791 1.93589 1.69210 1.75920 1.55960 1.93584 1.28997 1.85678 1.85451 1.30193 1.11321 1.24125 1.07359 1.21417 1.00522 1.02314 0.90481 0.91923 0.92272 0.92079 0.84065 0.91605 0.95714 0.93927 0.92754 0.94225 0.94113 0.91748 0.94897 0.96967 0.96732 0.93153 0.89129 0.90029 0.88398 0.84726 0.84930 0.84822 0.84994 0.89338 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 8.49 37.16 0.32 -1.39 16 2 C 0.09 0.85 2.38 -67.71 -0.16 0.68 16 3 H 0.08 0.80 7.80 -51.93 -0.40 0.40 16 4 N -0.68 -8.11 4.95 -106.72 -0.53 -8.64 16 5 C 0.07 1.09 4.45 -3.82 -0.02 1.07 16 6 C -0.06 -1.09 0.60 -154.51 -0.09 -1.18 16 7 C -0.12 -2.10 8.06 37.16 0.30 -1.80 16 8 C -0.13 -2.24 7.89 37.16 0.29 -1.95 16 9 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 10 C -0.51 -13.54 7.65 -34.44 -0.26 -13.81 16 11 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 12 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 13 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 14 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.10 -0.70 1.95 -91.04 -0.18 -0.88 16 19 C -0.11 -0.77 4.30 -26.91 -0.12 -0.89 16 20 C -0.60 -3.65 6.35 37.18 0.24 -3.42 16 21 S 2.41 18.60 5.31 -107.50 -0.57 18.03 16 22 O -0.95 -10.78 18.10 -57.81 -1.05 -11.82 16 23 O -0.94 -10.41 17.94 -57.81 -1.04 -11.45 16 24 C -0.60 -3.23 6.35 37.18 0.24 -2.99 16 25 C -0.11 -0.67 4.38 -26.92 -0.12 -0.78 16 26 H 0.06 0.47 6.66 -51.93 -0.35 0.12 16 27 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 28 H 0.06 0.51 6.65 -51.93 -0.35 0.16 16 29 H 0.34 3.89 5.48 -39.29 -0.22 3.68 16 30 H 0.07 1.06 8.05 -51.93 -0.42 0.65 16 31 H 0.02 0.39 7.44 -51.93 -0.39 0.01 16 32 H 0.04 0.68 7.60 -51.93 -0.39 0.28 16 33 H 0.05 1.08 6.62 -51.93 -0.34 0.73 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.24 6.62 -51.93 -0.34 0.90 16 37 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 41 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 42 H 0.08 0.57 6.85 -51.93 -0.36 0.21 16 43 H 0.10 0.76 6.65 -51.93 -0.35 0.41 16 44 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.13 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 49 H 0.08 0.52 6.85 -51.93 -0.36 0.17 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -33.83 375.40 -10.22 -44.05 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.64 Total: -1.17 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 0.22 Total: -25.19 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.21 Total: -34.36 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -2.08 Total: -23.27 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 18.60 SS G_CDS: -0.57 Total: 18.03 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.83 -10.22 -44.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348208607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.495 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds