Wall clock time and date at job start Tue Mar 31 2020 12:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 N 1.46905 * 109.47191 * 240.00051 * 2 1 3 5 5 C 1.46902 * 110.99800 * 85.00066 * 4 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 299.99665 * 6 5 4 8 8 C 1.52997 * 109.47164 * 59.99828 * 6 5 4 9 9 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 10 10 C 1.50706 * 109.46953 * 179.97438 * 9 6 5 11 11 H 1.07999 * 119.99816 * 0.02562 * 10 9 6 12 12 C 1.37876 * 120.00344 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99769 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00300 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46755 * 89.99832 * 14 12 10 16 16 H 1.48495 * 109.46931 * 209.99846 * 14 12 10 17 17 H 1.48500 * 109.46738 * 330.00088 * 14 12 10 18 18 C 1.52995 * 109.47240 * 119.99924 * 2 1 3 19 19 C 1.52591 * 109.24271 * 60.55687 * 18 2 1 20 20 C 1.53052 * 109.97684 * 169.67478 * 19 18 2 21 21 S 1.81678 * 108.96550 * 63.70854 * 20 19 18 22 22 O 1.42098 * 108.66111 * 191.34948 * 21 20 19 23 23 O 1.42104 * 108.66115 * 60.01139 * 21 20 19 24 24 C 1.81672 * 101.30546 * 305.68077 * 21 20 19 25 25 C 1.52592 * 109.24121 * 299.44480 * 18 2 1 26 26 H 1.09001 * 109.47129 * 300.00067 * 1 2 3 27 27 H 1.09002 * 109.46808 * 60.00170 * 1 2 3 28 28 H 1.08996 * 109.47051 * 179.97438 * 1 2 3 29 29 H 1.00904 * 110.99696 * 321.04494 * 4 2 1 30 30 H 1.08993 * 109.47737 * 60.00169 * 5 4 2 31 31 H 1.09000 * 109.47263 * 299.99731 * 5 4 2 32 32 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 33 33 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 35 35 H 1.09000 * 109.47140 * 60.00051 * 8 6 5 36 36 H 1.09001 * 109.47230 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47375 * 300.00034 * 8 6 5 38 38 H 1.09000 * 109.47486 * 299.99829 * 9 6 5 39 39 H 1.09001 * 109.47362 * 60.00551 * 9 6 5 40 40 H 0.97000 * 120.00540 * 180.02562 * 13 12 10 41 41 H 1.08998 * 109.23967 * 180.02562 * 18 2 1 42 42 H 1.08996 * 109.38783 * 289.87531 * 19 18 2 43 43 H 1.09002 * 109.38165 * 49.55496 * 19 18 2 44 44 H 1.08993 * 109.58313 * 303.85059 * 20 19 18 45 45 H 1.08997 * 109.62964 * 183.58764 * 20 19 18 46 46 H 1.09000 * 109.54931 * 294.44039 * 24 21 20 47 47 H 1.08998 * 109.54578 * 174.15549 * 24 21 20 48 48 H 1.08999 * 109.38228 * 310.44295 * 25 18 2 49 49 H 1.08999 * 109.38655 * 70.12358 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 3.9922 -1.0863 -3.2862 8 6 1.6452 -1.6889 -3.8952 9 6 2.6599 0.4198 -4.7697 10 6 3.1654 -0.3245 -5.9787 11 1 3.4150 -1.3725 -5.9023 12 6 3.3092 0.3324 -7.1824 13 7 3.0048 1.6084 -7.2755 14 14 3.9364 -0.5899 -8.6808 15 1 2.7878 -1.1730 -9.4197 16 1 4.6709 0.3478 -9.5676 17 1 4.8491 -1.6778 -8.2461 18 6 2.0400 -0.7212 1.2492 19 6 1.5400 -2.1628 1.2370 20 6 2.2419 -2.9690 2.3324 21 16 1.7896 -2.2823 3.9525 22 8 2.6368 -2.8527 4.9405 23 8 0.3799 -2.3721 4.1069 24 6 2.2409 -0.5357 3.7375 25 6 1.5399 0.0102 2.4915 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.4496 -1.4980 -1.4100 30 1 2.7588 1.0462 -2.1183 31 1 1.0871 0.6163 -2.5526 32 1 3.9456 -1.7653 -2.4348 33 1 4.3576 -1.6244 -4.1609 34 1 4.6688 -0.2629 -3.0577 35 1 0.6499 -1.2949 -4.1006 36 1 2.0102 -2.2271 -4.7700 37 1 1.5986 -2.3679 -3.0438 38 1 1.6644 0.8135 -4.9749 39 1 3.3365 1.2434 -4.5415 40 1 3.1055 2.0706 -8.1224 41 1 3.1300 -0.7186 1.2456 42 1 0.4642 -2.1741 1.4115 43 1 1.7521 -2.6110 0.2663 44 1 3.3216 -2.9054 2.1978 45 1 1.9282 -4.0114 2.2777 46 1 3.3207 -0.4503 3.6156 47 1 1.9252 0.0328 4.6123 48 1 1.7521 1.0749 2.3944 49 1 0.4641 -0.1353 2.5886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348208607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:28 Heat of formation + Delta-G solvation = -122.965484 kcal Electronic energy + Delta-G solvation = -25840.925730 eV Core-core repulsion = 22314.117778 eV Total energy + Delta-G solvation = -3526.807952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.14938 -38.57337 -37.89337 -37.01457 -35.49941 -34.19163 -32.69257 -30.89647 -28.79791 -27.87336 -27.74601 -26.62083 -24.67610 -24.40452 -23.08441 -20.42562 -19.65134 -19.47358 -18.31406 -17.73352 -17.26217 -16.79001 -16.61991 -16.44490 -15.99235 -15.74542 -15.14404 -14.97787 -14.85034 -14.52024 -14.41059 -14.02505 -13.87905 -13.76708 -13.48982 -13.26308 -13.17719 -13.08709 -13.02047 -12.78436 -12.76913 -12.67304 -12.44665 -12.40177 -12.22341 -12.18298 -12.01655 -11.85340 -11.71699 -11.55308 -11.34336 -11.21280 -10.82819 -10.78720 -10.63979 -10.49539 -9.17250 -8.13372 -6.19959 -0.83548 1.41053 1.41517 1.51964 1.83096 2.44092 2.79368 3.02120 3.20827 3.28270 3.68150 3.74624 3.85558 3.94456 4.12080 4.22061 4.22868 4.26517 4.41344 4.43663 4.46522 4.53391 4.61748 4.77626 4.81134 4.86188 4.89101 5.00703 5.01680 5.03011 5.10253 5.12232 5.17800 5.25887 5.26340 5.32044 5.38137 5.52912 5.55442 5.57754 5.63159 5.70458 5.91731 5.95600 6.19921 6.39897 6.64196 6.95957 7.47488 8.98897 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032918 B = 0.002476 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.389567 B =11307.202360 C =11599.418495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.089 3.911 3 H 0.077 0.923 4 N -0.675 5.675 5 C 0.084 3.916 6 C -0.055 4.055 7 C -0.106 4.106 8 C -0.122 4.122 9 C 0.039 3.961 10 C -0.512 4.512 11 H 0.066 0.934 12 C -0.005 4.005 13 N -0.938 5.938 14 Si 0.954 3.046 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.263 1.263 18 C -0.092 4.092 19 C -0.112 4.112 20 C -0.585 4.585 21 S 2.411 3.589 22 O -0.992 6.992 23 O -0.981 6.981 24 C -0.584 4.584 25 C -0.111 4.111 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.344 0.656 30 H 0.056 0.944 31 H 0.016 0.984 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.034 0.966 36 H 0.043 0.957 37 H 0.070 0.930 38 H -0.018 1.018 39 H -0.017 1.017 40 H 0.259 0.741 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.154 0.846 45 H 0.142 0.858 46 H 0.156 0.844 47 H 0.147 0.853 48 H 0.100 0.900 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.707 -5.949 22.249 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.021 4.021 3 H 0.095 0.905 4 N -0.307 5.307 5 C -0.045 4.045 6 C -0.056 4.056 7 C -0.163 4.163 8 C -0.180 4.180 9 C 0.002 3.998 10 C -0.550 4.550 11 H 0.084 0.916 12 C -0.201 4.201 13 N -0.580 5.580 14 Si 0.779 3.221 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.187 1.187 18 C -0.111 4.111 19 C -0.151 4.151 20 C -0.717 4.717 21 S 2.599 3.401 22 O -0.990 6.990 23 O -0.978 6.978 24 C -0.716 4.716 25 C -0.150 4.150 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.000 1.000 39 H 0.002 0.998 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.172 0.828 45 H 0.161 0.839 46 H 0.174 0.826 47 H 0.165 0.835 48 H 0.119 0.881 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.418 -6.196 23.072 24.011 hybrid contribution -0.379 0.596 -2.115 2.230 sum -2.797 -5.599 20.957 21.872 Atomic orbital electron populations 1.22641 0.97039 1.02912 1.02401 1.21544 0.92864 0.97856 0.89827 0.90468 1.60625 1.57292 1.09560 1.03194 1.21792 0.97893 0.94778 0.90059 1.20491 0.96155 0.95594 0.93320 1.21495 0.94922 0.99738 1.00158 1.21687 0.97725 0.97604 1.00937 1.19014 0.93977 0.93844 0.92987 1.21640 1.41816 0.96695 0.94893 0.91633 1.25905 0.96365 0.95630 1.02233 1.70103 1.50891 1.10692 1.26315 0.85610 0.78567 0.78535 0.79347 1.20174 1.21366 1.18672 1.21300 1.02633 0.93852 0.93296 1.21443 1.00233 0.94047 0.99351 1.30066 1.12662 1.11695 1.17256 1.07916 0.74390 0.79867 0.77945 1.93534 1.69654 1.77520 1.58255 1.93528 1.31216 1.86712 1.86362 1.30051 1.12735 1.21110 1.07722 1.21452 1.00658 1.02875 0.90016 0.90402 0.94050 0.91388 0.83500 0.92521 0.96609 0.90878 0.94754 0.95153 0.94710 0.93764 0.91136 0.99983 0.99825 0.93227 0.88316 0.89932 0.88480 0.82759 0.83945 0.82561 0.83507 0.88133 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 8.49 71.98 0.61 -2.41 16 2 C 0.09 1.46 2.38 44.91 0.11 1.57 16 3 H 0.08 1.36 7.80 -2.38 -0.02 1.35 16 4 N -0.67 -14.44 4.95 -491.55 -2.43 -16.87 16 5 C 0.08 2.55 4.45 86.31 0.38 2.93 16 6 C -0.06 -2.04 0.60 -52.18 -0.03 -2.07 16 7 C -0.11 -3.71 8.06 71.98 0.58 -3.13 16 8 C -0.12 -4.10 7.89 71.98 0.57 -3.53 16 9 C 0.04 1.98 4.04 29.85 0.12 2.10 16 10 C -0.51 -27.77 7.65 25.60 0.20 -27.58 16 11 H 0.07 3.40 5.68 -2.91 -0.02 3.39 16 12 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 13 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 14 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 C -0.09 -1.05 1.95 -11.07 -0.02 -1.07 16 19 C -0.11 -1.27 4.30 30.48 0.13 -1.14 16 20 C -0.59 -5.53 6.35 72.00 0.46 -5.07 16 21 S 2.41 33.45 5.31 -56.49 -0.30 33.15 16 22 O -0.99 -21.74 18.10 -127.40 -2.31 -24.04 16 23 O -0.98 -21.03 17.94 -127.40 -2.29 -23.32 16 24 C -0.58 -4.49 6.35 71.99 0.46 -4.03 16 25 C -0.11 -1.01 4.38 30.47 0.13 -0.88 16 26 H 0.08 0.99 6.66 -2.39 -0.02 0.98 16 27 H 0.04 0.80 7.45 -2.39 -0.02 0.78 16 28 H 0.07 0.98 6.65 -2.39 -0.02 0.96 16 29 H 0.34 6.86 5.48 -89.69 -0.49 6.37 16 30 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 31 H 0.02 0.50 7.44 -2.39 -0.02 0.48 16 32 H 0.07 2.11 7.60 -2.39 -0.02 2.09 16 33 H 0.03 1.32 6.62 -2.39 -0.02 1.30 16 34 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 1.65 6.62 -2.39 -0.02 1.64 16 37 H 0.07 1.82 6.57 -2.39 -0.02 1.81 16 38 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.10 1.03 8.09 -2.39 -0.02 1.01 16 42 H 0.08 0.93 6.85 -2.39 -0.02 0.92 16 43 H 0.10 1.16 6.65 -2.39 -0.02 1.14 16 44 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.10 0.75 8.10 -2.39 -0.02 0.73 16 49 H 0.09 0.81 6.85 -2.39 -0.02 0.80 16 Total: -1.00 -75.09 375.40 -0.43 -75.52 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.43 Total: 10.30 kcal Atomic # 6 Polarization: -48.28 SS G_CDS: 4.15 Total: -44.12 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -2.15 Total: -73.40 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -4.59 Total: -47.36 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 33.45 SS G_CDS: -0.30 Total: 33.15 kcal Total: -75.09 -0.43 -75.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348208607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.449 kcal (2) G-P(sol) polarization free energy of solvation -75.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds