Wall clock time and date at job start Tue Mar 31 2020 12:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47250 * 2 1 4 4 C 1.52996 * 109.47091 * 240.00041 * 2 1 3 5 5 C 1.50702 * 109.47012 * 65.00334 * 4 2 1 6 6 H 1.07997 * 120.00398 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99958 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99921 * 179.72011 * 7 5 4 10 10 H 1.48501 * 109.47215 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47233 * 119.99449 * 9 7 5 12 12 H 1.48498 * 109.47239 * 239.99771 * 9 7 5 13 13 C 1.53004 * 109.47224 * 119.99891 * 2 1 3 14 14 N 1.46899 * 109.46928 * 182.68623 * 13 2 1 15 15 C 1.46905 * 110.99731 * 65.84550 * 14 13 2 16 16 C 1.46900 * 110.99876 * 189.79262 * 14 13 2 17 17 H 1.09005 * 109.47146 * 270.64883 * 16 14 13 18 18 C 1.53001 * 109.47049 * 30.64819 * 16 14 13 19 19 C 1.52998 * 109.46646 * 60.00354 * 18 16 14 20 20 C 1.53001 * 109.47418 * 59.99813 * 19 18 16 21 21 C 1.52991 * 109.46989 * 299.99774 * 20 19 18 22 22 C 1.52996 * 109.47277 * 60.00214 * 21 20 19 23 23 H 1.09002 * 109.47169 * 59.99437 * 22 21 20 24 24 S 1.81403 * 109.47393 * 180.02562 * 22 21 20 25 25 C 1.81400 * 101.91892 * 291.20634 * 24 22 21 26 26 O 1.42093 * 108.58075 * 45.69524 * 24 22 21 27 27 O 1.42100 * 108.57602 * 176.72275 * 24 22 21 28 28 H 1.09001 * 109.46999 * 294.76686 * 1 2 3 29 29 H 1.08997 * 109.46872 * 54.76698 * 1 2 3 30 30 H 1.09002 * 109.46765 * 174.76882 * 1 2 3 31 31 H 1.08997 * 109.47365 * 304.99757 * 4 2 1 32 32 H 1.09003 * 109.46879 * 184.99742 * 4 2 1 33 33 H 0.96998 * 120.00103 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47342 * 302.69253 * 13 2 1 35 35 H 1.09004 * 109.46626 * 62.69279 * 13 2 1 36 36 H 1.08993 * 109.47125 * 52.45682 * 15 14 13 37 37 H 1.08998 * 109.47202 * 172.46491 * 15 14 13 38 38 H 1.08998 * 109.46683 * 292.46169 * 15 14 13 39 39 H 1.09003 * 109.46745 * 179.97438 * 18 16 14 40 40 H 1.08991 * 109.47280 * 300.00172 * 18 16 14 41 41 H 1.09008 * 109.47234 * 299.99534 * 19 18 16 42 42 H 1.09005 * 109.47157 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.46931 * 179.97438 * 20 19 18 44 44 H 1.08996 * 109.47312 * 60.00029 * 20 19 18 45 45 H 1.09002 * 109.47481 * 299.99842 * 21 20 19 46 46 H 1.09004 * 109.47219 * 179.97438 * 21 20 19 47 47 H 1.08998 * 109.47201 * 60.00456 * 25 24 22 48 48 H 1.08998 * 109.47198 * 179.97438 * 25 24 22 49 49 H 1.08999 * 109.47677 * 300.00170 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4765 6 1 1.0801 0.9743 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6755 -1.5192 -3.8512 9 14 1.4915 0.5586 -5.2500 10 1 0.7300 1.7671 -4.8440 11 1 2.7066 0.9674 -5.9996 12 1 0.6394 -0.2951 -6.1162 13 6 2.0401 -0.7212 1.2493 14 7 3.5076 -0.6652 1.2821 15 6 3.9780 0.7158 1.4542 16 6 4.0444 -1.5390 2.3339 17 1 4.1216 -0.9799 3.2665 18 6 3.1087 -2.7334 2.5314 19 6 3.0004 -3.5182 1.2225 20 6 4.3866 -4.0186 0.8116 21 6 5.3221 -2.8243 0.6142 22 6 5.4306 -2.0395 1.9230 23 1 5.8288 -2.6879 2.7035 24 16 6.5392 -0.6229 1.6888 25 6 8.1475 -1.4361 1.4815 26 8 6.1978 0.0225 0.4698 27 8 6.5664 0.1343 2.8909 28 1 -0.3633 0.4305 0.9332 29 1 -0.3633 0.5929 -0.8394 30 1 -0.3633 -1.0234 -0.0937 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2055 33 1 2.9228 -1.8421 -4.7318 34 1 1.6379 -0.2361 2.1386 35 1 1.7166 -1.7619 1.2254 36 1 3.4868 1.1618 2.3189 37 1 5.0569 0.7155 1.6092 38 1 3.7392 1.2947 0.5621 39 1 3.5073 -3.3820 3.3116 40 1 2.1212 -2.3769 2.8241 41 1 2.6021 -2.8698 0.4420 42 1 2.3342 -4.3694 1.3632 43 1 4.3093 -4.5781 -0.1207 44 1 4.7849 -4.6670 1.5920 45 1 4.9239 -2.1759 -0.1663 46 1 6.3099 -3.1808 0.3219 47 1 8.1110 -2.0982 0.6165 48 1 8.9191 -0.6816 1.3287 49 1 8.3787 -2.0171 2.3743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602476310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:21 Heat of formation + Delta-G solvation = -50.889156 kcal Electronic energy + Delta-G solvation = -27868.037994 eV Core-core repulsion = 24344.355506 eV Total energy + Delta-G solvation = -3523.682488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.82283 -36.83712 -36.29207 -35.88947 -33.84082 -32.00636 -31.33187 -29.69871 -29.47237 -27.00039 -26.25920 -24.24579 -22.89627 -22.66363 -21.53320 -19.20296 -18.84186 -18.53267 -16.98792 -16.62589 -16.14738 -15.71823 -15.28729 -14.97362 -14.70878 -14.35218 -14.08881 -13.66270 -13.42146 -13.28905 -13.21882 -12.90460 -12.60876 -12.36150 -12.31359 -12.14621 -11.85948 -11.77415 -11.69110 -11.41482 -11.38155 -11.22884 -11.18297 -10.89737 -10.79067 -10.76339 -10.34585 -10.27484 -10.14776 -10.08343 -9.96526 -9.68847 -9.43235 -8.96404 -8.72647 -8.15991 -7.80799 -5.81496 -3.80094 0.07804 2.82685 3.40893 3.48503 3.52284 3.69001 3.95931 4.19825 4.51212 4.60798 4.65797 4.69340 4.86846 5.02914 5.20945 5.26955 5.35547 5.39447 5.50065 5.52249 5.54889 5.57821 5.69236 5.72068 5.84237 5.91230 5.96057 6.00963 6.13479 6.27140 6.30999 6.34446 6.38317 6.40081 6.51385 6.59776 6.61602 6.83670 7.03493 7.09811 7.35316 7.45843 7.52400 7.93190 8.15420 8.31340 8.66298 9.27366 9.81379 11.29647 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.005060 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.705770 B = 5532.086153 C = 5963.467397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 H 0.056 0.944 4 C 0.036 3.964 5 C -0.509 4.509 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.049 3.951 14 N -0.521 5.521 15 C 0.010 3.990 16 C 0.098 3.902 17 H 0.057 0.943 18 C -0.111 4.111 19 C -0.132 4.132 20 C -0.100 4.100 21 C -0.102 4.102 22 C -0.547 4.547 23 H 0.127 0.873 24 S 2.414 3.586 25 C -0.667 4.667 26 O -0.905 6.905 27 O -0.954 6.954 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.008 0.992 32 H 0.040 0.960 33 H 0.255 0.745 34 H 0.018 0.982 35 H 0.091 0.909 36 H 0.021 0.979 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.114 0.886 46 H 0.060 0.940 47 H 0.131 0.869 48 H 0.125 0.875 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 -5.272 14.956 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.711 3.289 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.214 1.214 13 C -0.077 4.077 14 N -0.245 5.245 15 C -0.138 4.138 16 C -0.012 4.012 17 H 0.075 0.925 18 C -0.150 4.150 19 C -0.169 4.169 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.658 4.658 23 H 0.145 0.855 24 S 2.597 3.403 25 C -0.815 4.815 26 O -0.902 6.902 27 O -0.951 6.951 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.150 0.850 48 H 0.144 0.856 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.503 -4.626 14.371 16.859 hybrid contribution -0.102 -0.064 -0.061 0.134 sum 7.401 -4.690 14.311 16.780 Atomic orbital electron populations 1.21690 0.96531 1.01096 0.99568 1.21286 0.94130 0.99538 0.95713 0.92526 1.19072 0.97823 0.94202 0.89031 1.21353 1.33953 1.08064 0.91431 0.93114 1.24944 0.95558 0.95082 0.98711 1.69969 1.39406 1.21203 1.22758 0.86700 0.78161 0.80171 0.83882 1.20006 1.21250 1.21386 1.22686 0.85224 1.02248 0.97591 1.61980 1.10770 1.07815 1.43929 1.23059 0.99200 0.89822 1.01724 1.21293 0.91487 0.95252 0.93191 0.92484 1.21701 0.98905 0.95787 0.98589 1.21791 0.97124 0.99904 0.98053 1.21311 0.95230 0.96310 1.01035 1.21375 1.00141 0.98116 0.94353 1.30095 1.10743 1.17531 1.07458 0.85529 1.08463 0.77586 0.78151 0.76066 1.30341 1.24447 1.15197 1.11523 1.93742 1.80787 1.70293 1.45345 1.93578 1.86506 1.66983 1.48016 0.95449 0.92061 0.93585 0.97357 0.94207 0.93504 0.96340 0.89137 0.96036 0.93051 0.88850 0.91829 0.91017 0.88217 0.92490 0.91253 0.93051 0.86722 0.92143 0.85033 0.85601 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.92 37.16 0.33 -2.13 16 2 C -0.09 -1.80 2.22 -90.62 -0.20 -2.00 16 3 H 0.06 1.21 6.59 -51.93 -0.34 0.87 16 4 C 0.04 0.90 3.99 -27.88 -0.11 0.79 16 5 C -0.51 -14.37 8.47 -34.44 -0.29 -14.67 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.04 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 9 Si 0.88 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C 0.05 0.83 2.77 -3.82 -0.01 0.82 16 14 N -0.52 -8.77 2.57 -234.88 -0.60 -9.37 16 15 C 0.01 0.17 7.69 60.07 0.46 0.63 16 16 C 0.10 1.33 2.18 -67.71 -0.15 1.19 16 17 H 0.06 0.75 7.83 -51.93 -0.41 0.35 16 18 C -0.11 -1.34 4.86 -26.73 -0.13 -1.47 16 19 C -0.13 -1.76 5.18 -26.73 -0.14 -1.90 16 20 C -0.10 -1.24 5.92 -26.73 -0.16 -1.40 16 21 C -0.10 -1.32 4.81 -26.74 -0.13 -1.45 16 22 C -0.55 -6.43 2.33 -26.73 -0.06 -6.49 16 23 H 0.13 1.01 8.14 -51.92 -0.42 0.59 16 24 S 2.41 31.44 3.41 -107.50 -0.37 31.07 16 25 C -0.67 -5.73 10.40 101.05 1.05 -4.68 16 26 O -0.90 -15.79 14.50 -57.83 -0.84 -16.62 16 27 O -0.95 -14.59 17.02 -57.83 -0.98 -15.58 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.23 7.11 -51.93 -0.37 0.87 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.01 0.22 7.86 -51.93 -0.41 -0.19 16 32 H 0.04 1.09 7.54 -51.93 -0.39 0.70 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.02 0.29 8.05 -51.93 -0.42 -0.13 16 35 H 0.09 1.46 3.86 -51.93 -0.20 1.26 16 36 H 0.02 0.34 8.04 -51.93 -0.42 -0.07 16 37 H 0.05 0.89 2.30 -25.21 -0.06 0.83 16 38 H 0.09 1.83 6.78 -51.93 -0.35 1.47 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 41 H 0.10 1.68 5.06 -51.92 -0.26 1.42 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.11 1.97 7.35 -51.93 -0.38 1.59 16 46 H 0.06 0.61 7.01 -51.93 -0.36 0.24 16 47 H 0.13 0.98 7.17 -51.93 -0.37 0.60 16 48 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.12 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -34.15 364.45 -9.61 -43.76 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.39 Total: 1.34 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 0.37 Total: -31.19 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.13 Total: -35.40 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.82 Total: -32.20 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 31.44 SS G_CDS: -0.37 Total: 31.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.15 -9.61 -43.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602476310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.130 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds